pycom06g11230

Growth-regulating factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
16530962 .. 16533158
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11230.2

Sequence Viewer

Length: 1155 bp
ATGATCCTCTTGTATGGGCTTGCCAGTGCAGGAAGAGAAGCTTGTGGGGTTTGGGATAACAGTCCTGGTGCTGGTGGTGGACCTTTGTTTTGCAACACAAGCAATCCAGTCCCGAGTTGTCCGACTGATTTATACAATCCTGTCGGTTCTGATTTTGTCCTCCCAAAGTCTCTGCAGCACCATCTGCCTGGCTCTGATCACACCTTGGCTTTCAGTTCCTCAGTGGTGAAGGGTTCACTGGAGTTGGGGATTTCTGGGAGCTCGGATCCGGAGCCATGGAGGTGCAAAAGAACAGATGGAAAAAAATGGAGGTGTTCCAGAGATGTAGCTCCGGATCTGAAGTACTGTGAGAGACACGCTCACAAGACCAGGAACCGTTCAAGAAAGCCTGTGGAATCCCAAACCCTAAACCCCAACTTCCTCACCAACAACAACAACATGAGAAGTCCTACGGCTAATTTTTTCAGACAAAGCAACATCACCAACCGGCAAAGTCCATATTCTGGCAACATGGTTCCTAGTGCTGCCGCTGCTGCTGGATCACATGTCCAACCCAGGTCCTTGGCTTGGTTCATGAATGGGGAAGCCCCAGCTGTGGGTGGCTCAAACCAAGAGTGGGGGCAAATGATGCAATTCAAGCTGGGCCTAAAGAGCAGCAGTCACAACTACACAAAGCCTACTAACACAGATGTGGATGTTCCAAGGCAACAAACTGAAAGCTCACTGAATTTGCACACAGATTACAGCGGTGAAATCCAAGGCCTGCAAATTCAACAGACAAGGCATTTCATTGATGCATGGTCAACATCAACATCAGCAGAAAGAGAAGAAGATAGAGTTTTTGTTTCTCCAAACCAGAAGCTGCCCTTTTCATCTCTCACTCTATCAATGTCTGGAGGGGAAGGAAGCAATGAAGAGAGGGAAAATACCCAAATGGGGCTTGGAGTTTTGGGGGAAGAGAGGGAAAGTGTTGGGGGTTTGAAGTCCCAGTGGATGAACCCTATGTCATGGATGATGGGGTCACCACCTGGTGGACCATTGGCTGAAGCTTTGTGCCTTGGCATTGCTGGTGGTTCTAATGGCTGCAACAGTGGCTCCACCATCTGTAAGAGCTCTAGTGGAGATGCTAGGCAAGAATTTGATTTGACTAACTGA

Protein Analysis

385

Amino Acids

41.51

Weight (kDa)

6.51

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 503, 1031
AccIII TCCGGA 2 cut(s) 268, 331
AciI CCGC 2 cut(s) 528, 747
AclWI GGATC 4 cut(s) 260, 273, 342, 547
AcsI RAATTY 3 cut(s) 727, 768, 1136
AcuI CTGAAG 2 cut(s) 359, 1065
AdeI CACNNNGTG 1 cut(s) 1031
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 8 cut(s) 71, 503, 567, 595, 596, 616, 936, 1031
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 4 cut(s) 381, 637, 773, 982
AjnI CCWGG 5 cut(s) 64, 187, 368, 554, 1027
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 9 cut(s) 41, 261, 329, 593, 640, 720, 862, 1049, 1113
AluI AGCT 9 cut(s) 41, 261, 329, 593, 640, 720, 862, 1049, 1113
Alw21I GWGCWC 2 cut(s) 263, 1115
Alw26I GTCTC 2 cut(s) 174, 346
AlwI GGATC 4 cut(s) 260, 273, 342, 547
AlwNI CAGNNNCTG 1 cut(s) 862
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 2 cut(s) 268, 331
AoxI GGCC 2 cut(s) 643, 760
ApeKI GCWGC 7 cut(s) 175, 524, 530, 533, 654, 862, 1083
ApoI RAATTY 3 cut(s) 727, 768, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 4 cut(s) 80, 558, 643, 1034
AsuHPI GGTGA 5 cut(s) 238, 415, 472, 761, 1014
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 3 cut(s) 80, 558, 1034
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 263, 1115
Bbv12I GWGCWC 2 cut(s) 263, 1115
BbvI GCAGC 7 cut(s) 187, 511, 517, 520, 666, 849, 1070
BccI CCATC 4 cut(s) 189, 290, 1009, 1109
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 5 cut(s) 66, 189, 370, 556, 1029
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 174, 346
BfaI CTAG 3 cut(s) 519, 1116, 1128
BfmI CTRYAG 1 cut(s) 173
BisI GCNGC 8 cut(s) 176, 525, 528, 531, 534, 655, 863, 1084
BlsI GCNGC 8 cut(s) 177, 526, 529, 532, 535, 656, 864, 1085
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 5 cut(s) 66, 189, 370, 556, 1029
Bme18I GGWCC 3 cut(s) 80, 558, 1034
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 80, 558, 643, 1034
BmiI GGNNCC 5 cut(s) 267, 273, 374, 516, 1096
BmrFI CCNGG 5 cut(s) 66, 189, 370, 556, 1029
BmrI ACTGGG 1 cut(s) 982
BmsI GCATC 3 cut(s) 618, 784, 1114
BmuI ACTGGG 1 cut(s) 982
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 2 cut(s) 260, 915
BsaJI CCNNGG 7 cut(s) 204, 275, 554, 561, 701, 757, 1057
BsaWI WCCGGW 2 cut(s) 268, 331
BsaXI ACNNNNNCTCC 2 cut(s) 1079, 1109
Bsc4I CCNNNNNNNGG 8 cut(s) 71, 503, 567, 595, 596, 616, 936, 1031
Bse118I RCCGGY 1 cut(s) 486
Bse1I ACTGG 4 cut(s) 24, 107, 243, 988
Bse3DI GCAATG 2 cut(s) 916, 1062
BseAI TCCGGA 2 cut(s) 268, 331
BseBI CCWGG 5 cut(s) 66, 189, 370, 556, 1029
BseDI CCNNGG 7 cut(s) 204, 275, 554, 561, 701, 757, 1057
BseGI GGATG 3 cut(s) 700, 999, 1017
BseLI CCNNNNNNNGG 8 cut(s) 71, 503, 567, 595, 596, 616, 936, 1031
BseMI GCAATG 2 cut(s) 916, 1062
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 4 cut(s) 24, 107, 243, 988
BseXI GCAGC 7 cut(s) 187, 511, 517, 520, 666, 849, 1070
BseYI CCCAGC 2 cut(s) 589, 640
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 2 cut(s) 645, 762
BsiHKAI GWGCWC 2 cut(s) 263, 1115
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 3 cut(s) 269, 332, 487
BslFI GGGAC 2 cut(s) 95, 970
BslI CCNNNNNNNGG 8 cut(s) 71, 503, 567, 595, 596, 616, 936, 1031
BsmAI GTCTC 2 cut(s) 174, 346
BsmFI GGGAC 2 cut(s) 95, 970
BsnI GGCC 2 cut(s) 645, 762
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 263, 1115
Bsp13I TCCGGA 2 cut(s) 268, 331
Bsp143I GATC 5 cut(s) 3, 196, 265, 334, 539
Bsp19I CCATGG 1 cut(s) 275
BspACI CCGC 2 cut(s) 528, 747
BspANI GGCC 2 cut(s) 645, 762
BspCNI CTCAG 1 cut(s) 233
BspEI TCCGGA 2 cut(s) 268, 331
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 267, 273, 374, 516, 1096
BspMAI CTGCAG 1 cut(s) 177
BspPI GGATC 4 cut(s) 260, 273, 342, 547
BsrDI GCAATG 2 cut(s) 916, 1062
BsrFI RCCGGY 1 cut(s) 486
BsrI ACTGG 4 cut(s) 24, 107, 243, 988
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 7 cut(s) 204, 275, 554, 561, 701, 757, 1057
BssMI GATC 5 cut(s) 3, 196, 265, 334, 539
BssT1I CCWWGG 6 cut(s) 204, 275, 561, 701, 757, 1057
Bst2UI CCWGG 5 cut(s) 66, 189, 370, 556, 1029
Bst4CI ACNGT 4 cut(s) 62, 347, 377, 1091
Bst6I CTCTTC 3 cut(s) 28, 909, 951
BstAPI GCANNNNNTGC 2 cut(s) 184, 628
BstC8I GCNNGC 2 cut(s) 21, 764
BstDEI CTNAG 1 cut(s) 220
BstDSI CCRYGG 1 cut(s) 275
BstEII GGTNACC 1 cut(s) 1020
BstF5I GGATG 3 cut(s) 700, 999, 1017
BstKTI GATC 5 cut(s) 6, 199, 268, 337, 542
BstMAI GTCTC 2 cut(s) 174, 346
BstMBI GATC 5 cut(s) 3, 196, 265, 334, 539
BstMWI GCNNNNNNNGC 8 cut(s) 99, 184, 530, 533, 628, 637, 651, 1092
BstNI CCWGG 5 cut(s) 66, 189, 370, 556, 1029
BstNSI RCATGY 1 cut(s) 548
BstPI GGTNACC 1 cut(s) 1020
BstSCI CCNGG 5 cut(s) 64, 187, 368, 554, 1027
BstSFI CTRYAG 1 cut(s) 173
BstV1I GCAGC 7 cut(s) 187, 511, 517, 520, 666, 849, 1070
BstX2I RGATCY 2 cut(s) 265, 334
BstXI CCANNNNNNTGG 2 cut(s) 188, 562
BstYI RGATCY 2 cut(s) 265, 334
BsuRI GGCC 2 cut(s) 645, 762
BtgI CCRYGG 1 cut(s) 275
BtsCI GGATG 3 cut(s) 700, 999, 1017
BtsIMutI CAGTG 6 cut(s) 31, 228, 236, 722, 995, 1096
Cac8I GCNNGC 2 cut(s) 21, 764
CaiI CAGNNNCTG 1 cut(s) 862
CciI TCATGA 1 cut(s) 573
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 4 cut(s) 80, 558, 643, 1034
CsiI ACCWGGT 1 cut(s) 1027
Csp6I GTAC 1 cut(s) 343
CviAII CATG 7 cut(s) 276, 439, 511, 545, 574, 798, 1008
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 220
DpnI GATC 5 cut(s) 5, 198, 267, 336, 541
DpnII GATC 5 cut(s) 3, 196, 265, 334, 539
DraIII CACNNNGTG 1 cut(s) 1031
Eam1104I CTCTTC 3 cut(s) 28, 909, 951
EarI CTCTTC 3 cut(s) 28, 909, 951
Ecl136II GAGCTC 2 cut(s) 261, 1113
Eco130I CCWWGG 6 cut(s) 204, 275, 561, 701, 757, 1057
Eco147I AGGCCT 1 cut(s) 762
Eco24I GRGCYC 2 cut(s) 263, 1115
Eco47I GGWCC 3 cut(s) 80, 558, 1034
Eco53kI GAGCTC 2 cut(s) 261, 1113
Eco57I CTGAAG 2 cut(s) 359, 1065
Eco88I CYCGRG 1 cut(s) 112
Eco91I GGTNACC 1 cut(s) 1020
EcoICRI GAGCTC 2 cut(s) 261, 1113
EcoO109I RGGNCCY 1 cut(s) 558
EcoO65I GGTNACC 1 cut(s) 1020
EcoRII CCWGG 5 cut(s) 64, 187, 368, 554, 1027
EcoT14I CCWWGG 6 cut(s) 204, 275, 561, 701, 757, 1057
EcoT22I ATGCAT 1 cut(s) 799
EcoT38I GRGCYC 2 cut(s) 263, 1115
ErhI CCWWGG 6 cut(s) 204, 275, 561, 701, 757, 1057
FaeI CATG 7 cut(s) 279, 442, 514, 548, 577, 801, 1011
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 851, 883
FaqI GGGAC 2 cut(s) 95, 970
FatI CATG 7 cut(s) 275, 438, 510, 544, 573, 797, 1007
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 8 cut(s) 176, 525, 528, 531, 534, 655, 863, 1084
FokI GGATG 3 cut(s) 707, 1006, 1024
FriOI GRGCYC 2 cut(s) 263, 1115
Fsp4HI GCNGC 8 cut(s) 176, 525, 528, 531, 534, 655, 863, 1084
FspBI CTAG 3 cut(s) 519, 1116, 1128
GluI GCNGC 8 cut(s) 176, 525, 528, 531, 534, 655, 863, 1084
GsaI CCCAGC 2 cut(s) 593, 644
GsuI CTGGAG 2 cut(s) 260, 915
HaeIII GGCC 2 cut(s) 645, 762
HapII CCGG 3 cut(s) 269, 332, 487
Hin1II CATG 7 cut(s) 279, 442, 514, 548, 577, 801, 1011
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 2 cut(s) 39, 1047
HinfI GANTC 1 cut(s) 395
HpaII CCGG 3 cut(s) 269, 332, 487
HphI GGTGA 5 cut(s) 238, 415, 472, 761, 1014
Hpy166II GTNNAC 4 cut(s) 80, 236, 804, 1034
Hpy188I TCNGA 6 cut(s) 123, 151, 196, 265, 339, 467
Hpy188III TCNNGA 7 cut(s) 112, 269, 318, 332, 381, 574, 894
Hpy8I GTNNAC 4 cut(s) 80, 236, 804, 1034
HpyAV CCTTC 2 cut(s) 223, 896
HpyCH4III ACNGT 4 cut(s) 62, 347, 377, 1091
HpyCH4V TGCA 9 cut(s) 29, 93, 175, 285, 631, 733, 766, 797, 1086
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 184, 530, 533, 628, 637, 651, 1092
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 7 cut(s) 279, 442, 514, 548, 577, 801, 1011
Kpn2I TCCGGA 2 cut(s) 268, 331
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 3, 196, 265, 334, 539
LmnI GCTCC 4 cut(s) 258, 271, 334, 1100
Lsp1109I GCAGC 7 cut(s) 187, 511, 517, 520, 666, 849, 1070
LweI GCATC 3 cut(s) 618, 784, 1114
MabI ACCWGGT 1 cut(s) 1027
MaeI CTAG 3 cut(s) 519, 1116, 1128
MaeIII GTNAC 2 cut(s) 659, 1020
MalI GATC 5 cut(s) 5, 198, 267, 336, 541
MboI GATC 5 cut(s) 3, 196, 265, 334, 539
MboII GAAGA 5 cut(s) 45, 839, 842, 926, 968
MflI RGATCY 2 cut(s) 265, 334
MhlI GDGCHC 2 cut(s) 263, 1115
MluCI AATT 5 cut(s) 457, 632, 727, 768, 1136
MmeI TCCRAC 2 cut(s) 146, 574
MnlI CCTC 9 cut(s) 17, 170, 229, 273, 303, 431, 890, 912, 954
Mph1103I ATGCAT 1 cut(s) 799
MroI TCCGGA 2 cut(s) 268, 331
MslI CAYNNNNRTG 2 cut(s) 280, 689
MspA1I CMGCKG 3 cut(s) 530, 593, 747
MspI CCGG 3 cut(s) 269, 332, 487
MspR9I CCNGG 5 cut(s) 66, 189, 370, 556, 1029
MvaI CCWGG 5 cut(s) 66, 189, 370, 556, 1029
MwoI GCNNNNNNNGC 8 cut(s) 99, 184, 530, 533, 628, 637, 651, 1092
NcoI CCATGG 1 cut(s) 275
NdeII GATC 5 cut(s) 3, 196, 265, 334, 539
NlaIII CATG 7 cut(s) 279, 442, 514, 548, 577, 801, 1011
NlaIV GGNNCC 5 cut(s) 267, 273, 374, 516, 1096
NmuCI GTSAC 2 cut(s) 659, 1020
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 1 cut(s) 548
OliI CACNNNNGTG 1 cut(s) 689
PagI TCATGA 1 cut(s) 573
PceI AGGCCT 1 cut(s) 762
PciI ACATGT 1 cut(s) 544
PfeI GAWTC 1 cut(s) 395
PflMI CCANNNNNTGG 2 cut(s) 503, 1031
PkrI GCNGC 8 cut(s) 177, 526, 529, 532, 535, 656, 864, 1085
PpuMI RGGWCCY 1 cut(s) 558
PscI ACATGT 1 cut(s) 544
Psp124BI GAGCTC 2 cut(s) 263, 1115
Psp5II RGGWCCY 1 cut(s) 558
Psp6I CCWGG 5 cut(s) 64, 187, 368, 554, 1027
PspEI GGTNACC 1 cut(s) 1020
PspFI CCCAGC 2 cut(s) 589, 640
PspGI CCWGG 5 cut(s) 64, 187, 368, 554, 1027
PspN4I GGNNCC 5 cut(s) 267, 273, 374, 516, 1096
PspPI GGNCC 4 cut(s) 80, 558, 643, 1034
PspPPI RGGWCCY 1 cut(s) 558
PstI CTGCAG 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 862
PsuI RGATCY 2 cut(s) 265, 334
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 2 cut(s) 280, 689
SacI GAGCTC 2 cut(s) 263, 1115
SatI GCNGC 8 cut(s) 176, 525, 528, 531, 534, 655, 863, 1084
Sau3AI GATC 5 cut(s) 3, 196, 265, 334, 539
Sau96I GGNCC 4 cut(s) 80, 558, 643, 1034
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 5 cut(s) 66, 189, 370, 556, 1029
SduI GDGCHC 2 cut(s) 263, 1115
SexAI ACCWGGT 1 cut(s) 1027
SfaNI GCATC 3 cut(s) 618, 784, 1114
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 3 cut(s) 80, 558, 1034
SmiMI CAYNNNNRTG 2 cut(s) 280, 689
Sse9I AATT 5 cut(s) 457, 632, 727, 768, 1136
SseBI AGGCCT 1 cut(s) 762
SsiI CCGC 2 cut(s) 528, 747
SspMI CTAG 3 cut(s) 519, 1116, 1128
SstI GAGCTC 2 cut(s) 263, 1115
StuI AGGCCT 1 cut(s) 762
StyD4I CCNGG 5 cut(s) 64, 187, 368, 554, 1027
StyI CCWWGG 6 cut(s) 204, 275, 561, 701, 757, 1057
TaaI ACNGT 4 cut(s) 62, 347, 377, 1091
TasI AATT 5 cut(s) 457, 632, 727, 768, 1136
TatI WGTACW 1 cut(s) 342
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 1 cut(s) 395
TscAI CASTG 6 cut(s) 31, 228, 243, 729, 995, 1096
TseFI GTSAC 2 cut(s) 659, 1020
TseI GCWGC 7 cut(s) 175, 524, 530, 533, 654, 862, 1083
Tsp45I GTSAC 2 cut(s) 659, 1020
TspDTI ATGAA 6 cut(s) 562, 590, 778, 861, 927, 1010
TspRI CASTG 6 cut(s) 31, 228, 243, 729, 995, 1096
Van91I CCANNNNNTGG 2 cut(s) 503, 1031
VpaK11BI GGWCC 3 cut(s) 80, 558, 1034
XapI RAATTY 3 cut(s) 727, 768, 1136
XceI RCATGY 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 938
XspI CTAG 3 cut(s) 519, 1116, 1128
ZrmI AGTACT 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.