Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002110.1

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Reverse (-)

12911 .. 14676

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002110.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

atgaatcagatggtgacggtgatgcctcatcatgagcctcaattttgcagtggtggttttgatggagaaacagctagtagtaatagtacacctttgttttataacacaagcaacaacaacaacccagggattactgatatatacaatgctgcctcctctgattttggttcagttgtggtgccaaagaatctgcagcagccttactactctgatagtttgtctttcagttcctcaggtggaatggtgaatgtgaatgttagaattccttttactccagctcagagagaagagcttgagacacagactgtgatttacaagtatatcatggcatgcctccctgtccctcaacagttaattctttccatcaccaacaatccatcaccaaatggagcaagagactcatcaagaacaagaggagtgagagacatgttggtgggattttctaggagcttggatccagagccatggaggtgtaagagaaccgatggtaagaaatggaggtgctccagagacatagctcctgatcagaaatattgtgagagacactgccacaaaagacgttcaagaaagcatgtggaatcaatccccaacttactcaacaacaagaatgctaacatgctaaatccaaagccttcatctttcaagaataacaatcaaactccattttcaagttccatggtgactcctgctgctgcatcacatggccaacccagagcattggactggttcgtgaatggagaaagcgcctctgttgctgtttctaaccaagaatgggagcaattgatgccattcaagttgggtttgaacagccacaccagcaagcgtgacacagatgtggattttccaaagcaacaaaatgagagctcactcaatttgtatgggggtggtagccaaggtctgcagagtcagaggtcacatgactatttgggaggagctttaaattcaaatcaggcacaacagacaaggcatttcattgatgcttggtccactgagagagatggtaatggcattgatgagcttggccagaggaagaggggctctgttgcattaaaccagaagctgcccctttcatccctcactctatcaatgtctggtgagaatagtgaagccaatgaagaaaatggaaataggcaaatgggtgttggggttttcggttcagagaggcagaatgtaacatggatgagcccactttcatggatgagctcaacacctggtggacctttggctgaagctttgtgccttggcattgccagttccacaagagcaacaacagcctctaatggctgtagaagctcaaacgcagatgttagacaagaatttgatttgattaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

444

Amino Acids

48.88

Weight (kDa)

8.08

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	449, 462
AcoI	YGGCCR	2 cut(s)	703, 1021
AcsI	RAATTY	3 cut(s)	261, 940, 1316
AcuI	CTGAAG	1 cut(s)	1248
AdeI	CACNNNGTG	1 cut(s)	1214
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	772
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	6 cut(s)	564, 643, 669, 793, 805, 945
AjnI	CCWGG	2 cut(s)	124, 1210
AleI	CACNNNNGTG	1 cut(s)	833
Alw21I	GWGCWC	3 cut(s)	506, 866, 1205
Alw26I	GTCTC	5 cut(s)	290, 390, 417, 504, 535
AlwI	GGATC	2 cut(s)	449, 462
AlwNI	CAGNNNCTG	1 cut(s)	1060
AoxI	GGCC	2 cut(s)	703, 1021
ApeKI	GCWGC	6 cut(s)	149, 193, 196, 689, 692, 1060
ApoI	RAATTY	3 cut(s)	261, 940, 1316
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	2 cut(s)	984, 1217
AsuHPI	GGTGA	7 cut(s)	25, 31, 256, 358, 372, 691, 1106
AvaII	GGWCC	2 cut(s)	984, 1217
AxyI	CCTNAGG	1 cut(s)	232
BalI	TGGCCA	2 cut(s)	705, 1023
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	4 cut(s)	866, 1040, 1187, 1205
Bbv12I	GWGCWC	3 cut(s)	506, 866, 1205
BbvI	GCAGC	6 cut(s)	136, 205, 208, 676, 679, 1047
BccI	CCATC	6 cut(s)	4, 56, 371, 385, 479, 992
BciT130I	CCWGG	2 cut(s)	126, 1212
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	5 cut(s)	290, 390, 417, 504, 535
BfaI	CTAG	2 cut(s)	75, 444
BfmI	CTRYAG	3 cut(s)	191, 899, 1285
BfoI	RGCGCY	1 cut(s)	747
BisI	GCNGC	6 cut(s)	150, 194, 197, 690, 693, 1061
BlsI	GCNGC	6 cut(s)	151, 195, 198, 691, 694, 1062
Bme1390I	CCNGG	2 cut(s)	126, 1212
Bme18I	GGWCC	2 cut(s)	984, 1217
BmgT120I	GGNCC	2 cut(s)	984, 1217
BmiI	GGNNCC	2 cut(s)	180, 456
BmrFI	CCNGG	2 cut(s)	126, 1212
BmsI	GCATC	4 cut(s)	12, 704, 774, 967
BpmI	CTGGAG	2 cut(s)	258, 490
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	6 cut(s)	124, 125, 464, 675, 892, 1240
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	728, 1251
Bse21I	CCTNAGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	1245
BseBI	CCWGG	2 cut(s)	126, 1212
BseDI	CCNNGG	6 cut(s)	124, 125, 464, 675, 892, 1240
BseGI	GGATG	3 cut(s)	1070, 1185, 1203
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMI	GCAATG	1 cut(s)	1245
BseMII	CTCAG	3 cut(s)	246, 293, 981
BseNI	ACTGG	2 cut(s)	728, 1251
BseRI	GAGGAG	3 cut(s)	145, 429, 945
BseXI	GCAGC	6 cut(s)	136, 205, 208, 676, 679, 1047
BshFI	GGCC	2 cut(s)	705, 1023
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	3 cut(s)	506, 866, 1205
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	5 cut(s)	290, 390, 417, 504, 535
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	705, 1023
Bsp1286I	GDGCHC	5 cut(s)	506, 866, 1040, 1187, 1205
Bsp143I	GATC	2 cut(s)	454, 523
Bsp19I	CCATGG	2 cut(s)	464, 675
BspANI	GGCC	2 cut(s)	705, 1023
BspCNI	CTCAG	3 cut(s)	245, 292, 982
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	180, 456
BspMAI	CTGCAG	2 cut(s)	195, 903
BspPI	GGATC	2 cut(s)	449, 462
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	1245
BsrI	ACTGG	2 cut(s)	728, 1251
BssECI	CCNNGG	6 cut(s)	124, 125, 464, 675, 892, 1240
BssMI	GATC	2 cut(s)	454, 523
BssT1I	CCWWGG	4 cut(s)	464, 675, 892, 1240
Bst2UI	CCWGG	2 cut(s)	126, 1212
Bst4CI	ACNGT	3 cut(s)	19, 307, 351
Bst6I	CTCTTC	2 cut(s)	282, 1025
BstAPI	GCANNNNNTGC	1 cut(s)	784
BstC8I	GCNNGC	2 cut(s)	331, 821
BstDEI	CTNAG	3 cut(s)	232, 279, 990
BstDSI	CCRYGG	2 cut(s)	464, 675
BstF5I	GGATG	3 cut(s)	1070, 1185, 1203
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	2 cut(s)	457, 526
BstMAI	GTCTC	5 cut(s)	290, 390, 417, 504, 535
BstMBI	GATC	2 cut(s)	454, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	752, 784, 816, 1271, 1290
BstNI	CCWGG	2 cut(s)	126, 1212
BstNSI	RCATGY	4 cut(s)	333, 430, 575, 619
BstSCI	CCNGG	2 cut(s)	124, 1210
BstSFI	CTRYAG	3 cut(s)	191, 899, 1285
BstV1I	GCAGC	6 cut(s)	136, 205, 208, 676, 679, 1047
BstX2I	RGATCY	1 cut(s)	454
BstXI	CCANNNNNNTGG	3 cut(s)	465, 718, 1194
BstYI	RGATCY	1 cut(s)	454
Bsu36I	CCTNAGG	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	705, 1023
BtgI	CCRYGG	2 cut(s)	464, 675
BtsCI	GGATG	3 cut(s)	1070, 1185, 1203
BtsI	GCAGTG	2 cut(s)	55, 544
BtsIMutI	CAGTG	3 cut(s)	55, 544, 987
Cac8I	GCNNGC	2 cut(s)	331, 821
CaiI	CAGNNNCTG	1 cut(s)	1060
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	984, 1217
CsiI	ACCWGGT	1 cut(s)	1210
Csp6I	GTAC	1 cut(s)	87
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	232, 279, 990
DpnI	GATC	2 cut(s)	456, 525
DpnII	GATC	2 cut(s)	454, 523
DraI	TTTAAA	1 cut(s)	939
DraIII	CACNNNGTG	1 cut(s)	1214
EaeI	YGGCCR	2 cut(s)	703, 1021
Eam1104I	CTCTTC	2 cut(s)	282, 1025
EarI	CTCTTC	2 cut(s)	282, 1025
Ecl136II	GAGCTC	2 cut(s)	864, 1203
Eco130I	CCWWGG	4 cut(s)	464, 675, 892, 1240
Eco24I	GRGCYC	4 cut(s)	866, 1040, 1187, 1205
Eco47I	GGWCC	2 cut(s)	984, 1217
Eco53kI	GAGCTC	2 cut(s)	864, 1203
Eco57I	CTGAAG	1 cut(s)	1248
Eco81I	CCTNAGG	1 cut(s)	232
EcoICRI	GAGCTC	2 cut(s)	864, 1203
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	124, 1210
EcoT14I	CCWWGG	4 cut(s)	464, 675, 892, 1240
EcoT38I	GRGCYC	4 cut(s)	866, 1040, 1187, 1205
ErhI	CCWWGG	4 cut(s)	464, 675, 892, 1240
FaqI	GGGAC	1 cut(s)	326
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	6 cut(s)	150, 194, 197, 690, 693, 1061
FokI	GGATG	3 cut(s)	1057, 1192, 1210
FriOI	GRGCYC	4 cut(s)	866, 1040, 1187, 1205
Fsp4HI	GCNGC	6 cut(s)	150, 194, 197, 690, 693, 1061
FspBI	CTAG	2 cut(s)	75, 444
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	6 cut(s)	150, 194, 197, 690, 693, 1061
GsuI	CTGGAG	2 cut(s)	258, 490
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	705, 1023
HhaI	GCGC	1 cut(s)	746
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HindIII	AAGCTT	1 cut(s)	1230
HinfI	GANTC	6 cut(s)	4, 187, 398, 578, 682, 904
HphI	GGTGA	7 cut(s)	25, 31, 256, 358, 372, 691, 1106
Hpy166II	GTNNAC	3 cut(s)	89, 987, 1217
Hpy188I	TCNGA	7 cut(s)	9, 160, 211, 282, 528, 909, 1159
Hpy188III	TCNNGA	8 cut(s)	32, 405, 458, 507, 521, 564, 643, 730
Hpy8I	GTNNAC	3 cut(s)	89, 987, 1217
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	3 cut(s)	19, 307, 351
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	5 cut(s)	48, 193, 695, 901, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	752, 784, 816, 1271, 1290
HpyF3I	CTNAG	3 cut(s)	232, 279, 990
HpySE526I	ACGT	1 cut(s)	559
HspAI	GCGC	1 cut(s)	744
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	454, 523
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	6 cut(s)	389, 447, 509, 523, 775, 932
Lsp1109I	GCAGC	6 cut(s)	136, 205, 208, 676, 679, 1047
LweI	GCATC	4 cut(s)	12, 704, 774, 967
MabI	ACCWGGT	1 cut(s)	1210
MaeI	CTAG	2 cut(s)	75, 444
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	5 cut(s)	13, 679, 824, 912, 1171
MalI	GATC	2 cut(s)	456, 525
MboI	GATC	2 cut(s)	454, 523
MboII	GAAGA	3 cut(s)	299, 1042, 1127
MfeI	CAATTG	1 cut(s)	779
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	5 cut(s)	506, 866, 1040, 1187, 1205
MlsI	TGGCCA	2 cut(s)	705, 1023
MluCI	AATT	7 cut(s)	41, 261, 354, 779, 871, 940, 1316
MluNI	TGGCCA	2 cut(s)	705, 1023
MlyI	GAGTC	3 cut(s)	392, 676, 913
Mox20I	TGGCCA	2 cut(s)	705, 1023
MscI	TGGCCA	2 cut(s)	705, 1023
MseI	TTAA	4 cut(s)	353, 938, 1049, 1329
MslI	CAYNNNNRTG	4 cut(s)	431, 469, 833, 1192
Msp20I	TGGCCA	2 cut(s)	705, 1023
MspR9I	CCNGG	2 cut(s)	126, 1212
MunI	CAATTG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	126, 1212
MwoI	GCNNNNNNNGC	5 cut(s)	752, 784, 816, 1271, 1290
NcoI	CCATGG	2 cut(s)	464, 675
NdeII	GATC	2 cut(s)	454, 523
NlaIV	GGNNCC	2 cut(s)	180, 456
NmuCI	GTSAC	4 cut(s)	13, 679, 824, 912
NspI	RCATGY	4 cut(s)	333, 430, 575, 619
OliI	CACNNNNGTG	1 cut(s)	833
PaeI	GCATGC	1 cut(s)	333
PagI	TCATGA	1 cut(s)	31
PasI	CCCWGGG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	3 cut(s)	4, 187, 578
PkrI	GCNGC	6 cut(s)	151, 195, 198, 691, 694, 1062
PleI	GAGTC	3 cut(s)	392, 676, 912
PpsI	GAGTC	3 cut(s)	392, 676, 912
PscI	ACATGT	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	102
Psp124BI	GAGCTC	2 cut(s)	866, 1205
Psp6I	CCWGG	2 cut(s)	124, 1210
PspGI	CCWGG	2 cut(s)	124, 1210
PspN4I	GGNNCC	2 cut(s)	180, 456
PspPI	GGNCC	2 cut(s)	984, 1217
PstI	CTGCAG	2 cut(s)	195, 903
PstNI	CAGNNNCTG	1 cut(s)	1060
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	4 cut(s)	431, 469, 833, 1192
SacI	GAGCTC	2 cut(s)	866, 1205
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	353, 938, 1049, 1329
SatI	GCNGC	6 cut(s)	150, 194, 197, 690, 693, 1061
Sau3AI	GATC	2 cut(s)	454, 523
Sau96I	GGNCC	2 cut(s)	984, 1217
SchI	GAGTC	3 cut(s)	392, 676, 913
ScrFI	CCNGG	2 cut(s)	126, 1212
SduI	GDGCHC	5 cut(s)	506, 866, 1040, 1187, 1205
SexAI	ACCWGGT	1 cut(s)	1210
SfaNI	GCATC	4 cut(s)	12, 704, 774, 967
SfcI	CTRYAG	3 cut(s)	191, 899, 1285
SinI	GGWCC	2 cut(s)	984, 1217
SmiMI	CAYNNNNRTG	4 cut(s)	431, 469, 833, 1192
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	333
Sse9I	AATT	7 cut(s)	41, 261, 354, 779, 871, 940, 1316
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	75, 444
SstI	GAGCTC	2 cut(s)	866, 1205
StyD4I	CCNGG	2 cut(s)	124, 1210
StyI	CCWWGG	4 cut(s)	464, 675, 892, 1240
TaaI	ACNGT	3 cut(s)	19, 307, 351
TaiI	ACGT	1 cut(s)	562
TasI	AATT	7 cut(s)	41, 261, 354, 779, 871, 940, 1316
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	4, 187, 578
Tru1I	TTAA	4 cut(s)	353, 938, 1049, 1329
Tru9I	TTAA	4 cut(s)	353, 938, 1049, 1329
TscAI	CASTG	3 cut(s)	55, 551, 994
TseFI	GTSAC	4 cut(s)	13, 679, 824, 912
TseI	GCWGC	6 cut(s)	149, 193, 196, 689, 692, 1060
Tsp45I	GTSAC	4 cut(s)	13, 679, 824, 912
TspDTI	ATGAA	6 cut(s)	17, 624, 961, 1059, 1128, 1182
TspRI	CASTG	3 cut(s)	55, 551, 994
VpaK11BI	GGWCC	2 cut(s)	984, 1217
XapI	RAATTY	3 cut(s)	261, 940, 1316
XceI	RCATGY	4 cut(s)	333, 430, 575, 619
XspI	CTAG	2 cut(s)	75, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.