Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Forward (+)

7358141 .. 7359906

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG087800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAATCAGATGGTGACGGTGATGCCTCATCATGAGCCTCAATTTTGCAGTGGTGGTTTTGATGGAGAAACAGCTAGTAGTAATAGTACACCTTTGTTTTATAACACAAGCAACAACAACAACCCAGGGATTACTGATATATACAATGCTGCCTCCTCTGATTTTGGTTCAGTTGTGGTGCCAAAGAATCTGCAGCAGCCTTACTACTCTGATAGTTTGTCTTTCAGTTCCTCAGTAGGTGGAATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCTCAGAGAGAAGAGCTTGAGACACAGACTGTGATTTACAAGTATATCATGGCATGCCTCCCTGTCCCTCAACAGTTAATTCTTTCCATCACCAACAATCCATCACCAAATGGAGCAAGAGACTCATCAAGAACAAGAGGAGTGAGAGACATGTTGGTGGGATTTTCTAGGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACCGATGGTAAGAAATGGAGGTGCTCCAGAGACATAGCTCCTGATCAGAAATATTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCATGTGGAATCAATCCCCAACTTACTCAACAACAAGAATGCTAACATGCTAAATCCAAAGCCTTCATCTTTCAAGAATAACAATCAAACTCCATTTTCAAGTTCCATGGTGACTCCTGCTGCTGCATCACATGGCCAACCCAGAGCATTGGACTGGTTCGTGAATGGAGAAAGCGCCTCTGTTGCTGTTTCTAACCAAGAATGGGAGCAATTGATGCCATTCAAGTTGGGTTTGAACAGCCACACCAGCAAGCGTGACACAGATGTGGATTTTCCAAAGCAACAAAATGAGAGCTCACTCAATTTGTATGGGGGTGGTAGCCAAGGTCTGCAGAGTCAGAGGTCACATGACTATTTGGGAGGAGCTTTAAATTCAAATCAGGCACAACAGACAAGGCATTTCATTGATGCTTGGTCCACTGAGAGAGATGGTAATGGCATTGATGAGCTTGGCCAGAGGAAGAGGGGCTCTGTTGCATTAAACCAGAAGCTGCCCCTTTCATCCCTCACTCTATCAATGTCTGGTGAGAATAGTGAAGCCAATGAAGAAAATGGAAATAGGCAAATGGGTGTTGGGGTTTTCGGTTCAGAGAGGCAGAATGTAACATGGATGAGCCCACTTTCATGGATGAGCTCAACACCTGGTGGACCTTTGGCTGAAGCTTTGTGCCTTGGCATTGCCAGTTCCACAAGAGCAACAACAGCCTCTAATGGCTGTAGAAGCTCAAACGCAGATGTTAGACAAGAATTTGATTTGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

445

Amino Acids

48.98

Weight (kDa)

8.08

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	90 - 123	3.2e-11	QLQ
WRC	PF08879	154 - 192	7.9e-17	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	452, 465
AcoI	YGGCCR	2 cut(s)	706, 1024
AcsI	RAATTY	3 cut(s)	264, 943, 1319
AcuI	CTGAAG	1 cut(s)	1251
AdeI	CACNNNGTG	1 cut(s)	1217
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	6 cut(s)	567, 646, 672, 796, 808, 948
AjnI	CCWGG	2 cut(s)	124, 1213
AleI	CACNNNNGTG	1 cut(s)	836
Alw21I	GWGCWC	3 cut(s)	509, 869, 1208
Alw26I	GTCTC	5 cut(s)	293, 393, 420, 507, 538
AlwI	GGATC	2 cut(s)	452, 465
AlwNI	CAGNNNCTG	1 cut(s)	1063
AoxI	GGCC	2 cut(s)	706, 1024
ApeKI	GCWGC	6 cut(s)	149, 193, 196, 692, 695, 1063
ApoI	RAATTY	3 cut(s)	264, 943, 1319
AspLEI	GCGC	1 cut(s)	749
AspS9I	GGNCC	2 cut(s)	987, 1220
AsuHPI	GGTGA	7 cut(s)	25, 31, 259, 361, 375, 694, 1109
AvaII	GGWCC	2 cut(s)	987, 1220
BalI	TGGCCA	2 cut(s)	708, 1026
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	178
BanII	GRGCYC	4 cut(s)	869, 1043, 1190, 1208
Bbv12I	GWGCWC	3 cut(s)	509, 869, 1208
BbvI	GCAGC	6 cut(s)	136, 205, 208, 679, 682, 1050
BccI	CCATC	6 cut(s)	4, 56, 374, 388, 482, 995
BciT130I	CCWGG	2 cut(s)	126, 1215
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	5 cut(s)	293, 393, 420, 507, 538
BfaI	CTAG	2 cut(s)	75, 447
BfmI	CTRYAG	3 cut(s)	191, 902, 1288
BfoI	RGCGCY	1 cut(s)	750
BisI	GCNGC	6 cut(s)	150, 194, 197, 693, 696, 1064
BlsI	GCNGC	6 cut(s)	151, 195, 198, 694, 697, 1065
Bme1390I	CCNGG	2 cut(s)	126, 1215
Bme18I	GGWCC	2 cut(s)	987, 1220
BmgT120I	GGNCC	2 cut(s)	987, 1220
BmiI	GGNNCC	2 cut(s)	180, 459
BmrFI	CCNGG	2 cut(s)	126, 1215
BmsI	GCATC	4 cut(s)	12, 707, 777, 970
BpmI	CTGGAG	2 cut(s)	261, 493
BpuEI	CTTGAG	1 cut(s)	317
BsaJI	CCNNGG	6 cut(s)	124, 125, 467, 678, 895, 1243
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	2 cut(s)	731, 1254
Bse3DI	GCAATG	1 cut(s)	1248
BseBI	CCWGG	2 cut(s)	126, 1215
BseDI	CCNNGG	6 cut(s)	124, 125, 467, 678, 895, 1243
BseGI	GGATG	3 cut(s)	1073, 1188, 1206
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	1248
BseMII	CTCAG	3 cut(s)	246, 296, 984
BseNI	ACTGG	2 cut(s)	731, 1254
BseRI	GAGGAG	3 cut(s)	145, 432, 948
BseXI	GCAGC	6 cut(s)	136, 205, 208, 679, 682, 1050
BshFI	GGCC	2 cut(s)	708, 1026
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	3 cut(s)	509, 869, 1208
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	5 cut(s)	293, 393, 420, 507, 538
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	2 cut(s)	708, 1026
Bsp1286I	GDGCHC	5 cut(s)	509, 869, 1043, 1190, 1208
Bsp143I	GATC	2 cut(s)	457, 526
Bsp19I	CCATGG	2 cut(s)	467, 678
BspANI	GGCC	2 cut(s)	708, 1026
BspCNI	CTCAG	3 cut(s)	245, 295, 985
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	180, 459
BspMAI	CTGCAG	2 cut(s)	195, 906
BspPI	GGATC	2 cut(s)	452, 465
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	1248
BsrI	ACTGG	2 cut(s)	731, 1254
BssECI	CCNNGG	6 cut(s)	124, 125, 467, 678, 895, 1243
BssMI	GATC	2 cut(s)	457, 526
BssT1I	CCWWGG	4 cut(s)	467, 678, 895, 1243
Bst2UI	CCWGG	2 cut(s)	126, 1215
Bst4CI	ACNGT	3 cut(s)	19, 310, 354
Bst6I	CTCTTC	2 cut(s)	285, 1028
BstAPI	GCANNNNNTGC	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	334, 824
BstDEI	CTNAG	3 cut(s)	232, 282, 993
BstDSI	CCRYGG	2 cut(s)	467, 678
BstF5I	GGATG	3 cut(s)	1073, 1188, 1206
BstH2I	RGCGCY	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	749
BstKTI	GATC	2 cut(s)	460, 529
BstMAI	GTCTC	5 cut(s)	293, 393, 420, 507, 538
BstMBI	GATC	2 cut(s)	457, 526
BstMWI	GCNNNNNNNGC	5 cut(s)	755, 787, 819, 1274, 1293
BstNI	CCWGG	2 cut(s)	126, 1215
BstNSI	RCATGY	4 cut(s)	336, 433, 578, 622
BstSCI	CCNGG	2 cut(s)	124, 1213
BstSFI	CTRYAG	3 cut(s)	191, 902, 1288
BstV1I	GCAGC	6 cut(s)	136, 205, 208, 679, 682, 1050
BstX2I	RGATCY	1 cut(s)	457
BstXI	CCANNNNNNTGG	3 cut(s)	468, 721, 1197
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	708, 1026
BtgI	CCRYGG	2 cut(s)	467, 678
BtsCI	GGATG	3 cut(s)	1073, 1188, 1206
BtsI	GCAGTG	2 cut(s)	55, 547
BtsIMutI	CAGTG	3 cut(s)	55, 547, 990
Cac8I	GCNNGC	2 cut(s)	334, 824
CaiI	CAGNNNCTG	1 cut(s)	1063
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	749
Cfr13I	GGNCC	2 cut(s)	987, 1220
CsiI	ACCWGGT	1 cut(s)	1213
Csp6I	GTAC	1 cut(s)	87
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	232, 282, 993
DpnI	GATC	2 cut(s)	459, 528
DpnII	GATC	2 cut(s)	457, 526
DraI	TTTAAA	1 cut(s)	942
DraIII	CACNNNGTG	1 cut(s)	1217
EaeI	YGGCCR	2 cut(s)	706, 1024
Eam1104I	CTCTTC	2 cut(s)	285, 1028
EarI	CTCTTC	2 cut(s)	285, 1028
Ecl136II	GAGCTC	2 cut(s)	867, 1206
Eco130I	CCWWGG	4 cut(s)	467, 678, 895, 1243
Eco24I	GRGCYC	4 cut(s)	869, 1043, 1190, 1208
Eco47I	GGWCC	2 cut(s)	987, 1220
Eco53kI	GAGCTC	2 cut(s)	867, 1206
Eco57I	CTGAAG	1 cut(s)	1251
EcoICRI	GAGCTC	2 cut(s)	867, 1206
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	124, 1213
EcoT14I	CCWWGG	4 cut(s)	467, 678, 895, 1243
EcoT38I	GRGCYC	4 cut(s)	869, 1043, 1190, 1208
ErhI	CCWWGG	4 cut(s)	467, 678, 895, 1243
FaqI	GGGAC	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	6 cut(s)	150, 194, 197, 693, 696, 1064
FokI	GGATG	3 cut(s)	1060, 1195, 1213
FriOI	GRGCYC	4 cut(s)	869, 1043, 1190, 1208
Fsp4HI	GCNGC	6 cut(s)	150, 194, 197, 693, 696, 1064
FspBI	CTAG	2 cut(s)	75, 447
GlaI	GCGC	1 cut(s)	748
GluI	GCNGC	6 cut(s)	150, 194, 197, 693, 696, 1064
GsuI	CTGGAG	2 cut(s)	261, 493
HaeII	RGCGCY	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	708, 1026
HhaI	GCGC	1 cut(s)	749
Hin6I	GCGC	1 cut(s)	747
HinP1I	GCGC	1 cut(s)	747
HindIII	AAGCTT	1 cut(s)	1233
HinfI	GANTC	6 cut(s)	4, 187, 401, 581, 685, 907
HphI	GGTGA	7 cut(s)	25, 31, 259, 361, 375, 694, 1109
Hpy166II	GTNNAC	3 cut(s)	89, 990, 1220
Hpy188I	TCNGA	7 cut(s)	9, 160, 211, 285, 531, 912, 1162
Hpy188III	TCNNGA	8 cut(s)	32, 408, 461, 510, 524, 567, 646, 733
Hpy8I	GTNNAC	3 cut(s)	89, 990, 1220
HpyAV	CCTTC	1 cut(s)	645
HpyCH4III	ACNGT	3 cut(s)	19, 310, 354
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	5 cut(s)	48, 193, 698, 904, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	755, 787, 819, 1274, 1293
HpyF3I	CTNAG	3 cut(s)	232, 282, 993
HpySE526I	ACGT	1 cut(s)	562
HspAI	GCGC	1 cut(s)	747
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	457, 526
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	6 cut(s)	392, 450, 512, 526, 778, 935
Lsp1109I	GCAGC	6 cut(s)	136, 205, 208, 679, 682, 1050
LweI	GCATC	4 cut(s)	12, 707, 777, 970
MabI	ACCWGGT	1 cut(s)	1213
MaeI	CTAG	2 cut(s)	75, 447
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	5 cut(s)	13, 682, 827, 915, 1174
MalI	GATC	2 cut(s)	459, 528
MboI	GATC	2 cut(s)	457, 526
MboII	GAAGA	3 cut(s)	302, 1045, 1130
MfeI	CAATTG	1 cut(s)	782
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	5 cut(s)	509, 869, 1043, 1190, 1208
MlsI	TGGCCA	2 cut(s)	708, 1026
MluCI	AATT	7 cut(s)	41, 264, 357, 782, 874, 943, 1319
MluNI	TGGCCA	2 cut(s)	708, 1026
MlyI	GAGTC	3 cut(s)	395, 679, 916
Mox20I	TGGCCA	2 cut(s)	708, 1026
MscI	TGGCCA	2 cut(s)	708, 1026
MseI	TTAA	4 cut(s)	356, 941, 1052, 1332
MslI	CAYNNNNRTG	4 cut(s)	434, 472, 836, 1195
Msp20I	TGGCCA	2 cut(s)	708, 1026
MspR9I	CCNGG	2 cut(s)	126, 1215
MunI	CAATTG	1 cut(s)	782
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	126, 1215
MwoI	GCNNNNNNNGC	5 cut(s)	755, 787, 819, 1274, 1293
NcoI	CCATGG	2 cut(s)	467, 678
NdeII	GATC	2 cut(s)	457, 526
NlaIV	GGNNCC	2 cut(s)	180, 459
NmuCI	GTSAC	4 cut(s)	13, 682, 827, 915
NspI	RCATGY	4 cut(s)	336, 433, 578, 622
OliI	CACNNNNGTG	1 cut(s)	836
PaeI	GCATGC	1 cut(s)	336
PagI	TCATGA	1 cut(s)	31
PasI	CCCWGGG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	3 cut(s)	4, 187, 581
PkrI	GCNGC	6 cut(s)	151, 195, 198, 694, 697, 1065
PleI	GAGTC	3 cut(s)	395, 679, 915
PpsI	GAGTC	3 cut(s)	395, 679, 915
PscI	ACATGT	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	102
Psp124BI	GAGCTC	2 cut(s)	869, 1208
Psp6I	CCWGG	2 cut(s)	124, 1213
PspGI	CCWGG	2 cut(s)	124, 1213
PspN4I	GGNNCC	2 cut(s)	180, 459
PspPI	GGNCC	2 cut(s)	987, 1220
PstI	CTGCAG	2 cut(s)	195, 906
PstNI	CAGNNNCTG	1 cut(s)	1063
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	4 cut(s)	434, 472, 836, 1195
SacI	GAGCTC	2 cut(s)	869, 1208
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	4 cut(s)	356, 941, 1052, 1332
SatI	GCNGC	6 cut(s)	150, 194, 197, 693, 696, 1064
Sau3AI	GATC	2 cut(s)	457, 526
Sau96I	GGNCC	2 cut(s)	987, 1220
SchI	GAGTC	3 cut(s)	395, 679, 916
ScrFI	CCNGG	2 cut(s)	126, 1215
SduI	GDGCHC	5 cut(s)	509, 869, 1043, 1190, 1208
SexAI	ACCWGGT	1 cut(s)	1213
SfaNI	GCATC	4 cut(s)	12, 707, 777, 970
SfcI	CTRYAG	3 cut(s)	191, 902, 1288
SinI	GGWCC	2 cut(s)	987, 1220
SmiMI	CAYNNNNRTG	4 cut(s)	434, 472, 836, 1195
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	7 cut(s)	41, 264, 357, 782, 874, 943, 1319
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	2 cut(s)	75, 447
SstI	GAGCTC	2 cut(s)	869, 1208
StyD4I	CCNGG	2 cut(s)	124, 1213
StyI	CCWWGG	4 cut(s)	467, 678, 895, 1243
TaaI	ACNGT	3 cut(s)	19, 310, 354
TaiI	ACGT	1 cut(s)	565
TasI	AATT	7 cut(s)	41, 264, 357, 782, 874, 943, 1319
TatI	WGTACW	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	4, 187, 581
Tru1I	TTAA	4 cut(s)	356, 941, 1052, 1332
Tru9I	TTAA	4 cut(s)	356, 941, 1052, 1332
TscAI	CASTG	3 cut(s)	55, 554, 997
TseFI	GTSAC	4 cut(s)	13, 682, 827, 915
TseI	GCWGC	6 cut(s)	149, 193, 196, 692, 695, 1063
Tsp45I	GTSAC	4 cut(s)	13, 682, 827, 915
TspDTI	ATGAA	6 cut(s)	17, 627, 964, 1062, 1131, 1185
TspRI	CASTG	3 cut(s)	55, 554, 997
VpaK11BI	GGWCC	2 cut(s)	987, 1220
XapI	RAATTY	3 cut(s)	264, 943, 1319
XceI	RCATGY	4 cut(s)	336, 433, 578, 622
XspI	CTAG	2 cut(s)	75, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.