Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Forward (+)

7186934 .. 7189326

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGAAGAGTAGGAGAAATGGGTTTGTGGAAACAGAAACAGAGTGTTGTGATATTGGGTTGGGTTTGATGATGGAAACCCATCACCAATCATTTCCTTGTAAGAAGATGAATCAGATGGTGACGGTGATGCCTCATCATGAGCCTCAATTTTGCAGTGGTGGTTTTGATGGAGAAACAGCTAGTAGTAATAGTACACCTTTGTTTTATAACACAAGCAACAACAACAACCCAGGGATTACTGATATATACAATGCTGCCTCCTCTGATTTTGGTTCAGTTGTGGTGCCAAAGAATCTGCAGCAGCCTTACTACTCTGATAGTTTGTCTTTCAGTTCCTCAGGTGGAATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCTCAGAGAGAAGAGCTTGAGACACAGACTGTGATTTACAAGTATATCATGGCATGCCTCCCTGTCCCTCAACAGTTAATTCTTTCCATCACCAACAATCCATCACCAAATGGAGCAAGAGACTCATCAAGAACAAGAGGAGTGAGAGACATGTTGGTGGGATTTTCTAGGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACCGATGGTAAGAAATGGAGGTGCTCCAGAGACATAGCTCCTGATCAGAAATATTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCATGTGGAATCAATCCCCAACTTACTCAACAACAAGAATGCTAACATGCTAAATCCAAAGCCTTCATCTTTCAAGAATAACAATCAAACTCCATTTTCAAGTTCCATGGTGACTCCTGCTGCTGCATCACATGGCCAACCCAGAGCATTGGACTGGTTCGTGAATGGAGAAAGCGCCTCTGTTGCTGTTTCTAACCAAGAATGGGAGCAATTGATGCCATTCAAGTTGGGTTTGAACAGCCACACCAGCAAGCGTGACACAGATGTGGATTTTCCAAAGCAACAAAATGAGAGCTCACTCAATTTGTATGGGGGTGGTAGCCAAGGTCTGCAGAGTCAGAGGTCACATGACTATTTGGGAGGAGCTTTAAATTCAAATCAGGCACAACAGACAAGGCATTTCATTGATGCTTGGTCCACTGAGAGAGATGGTAATGGCATTGATGAGCTTGGCCAGAGGAAGAGGGGCTCTGTTGCATTAAACCAGAAGCTGCCCCTTTCATCCCTCACTCTATCAATGTCTGGTGAGAATAGTGAAGCCAATGAAGAAAATGGAAATAGGCAAATGGGTGTTGGGGTTTTCGGTTCAGAGAGGCAGAATGTAACATGGATGAGCCCACTTTCATGGATGAGCTCAACACCTGGTGGACCTTTGGCTGAAGCTTTGTGCCTTGGCATTGCCAGTTCCACAAGAGCAACAACAGCCTCTAATGGCTGTAGAAGCTCAAACGCAGATGTTAGACAAGAATTTGATTTGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

479

Amino Acids

52.91

Weight (kDa)

7.98

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	124 - 157	3.6e-11	QLQ
WRC	PF08879	188 - 226	8.7e-17	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	554, 567
AcoI	YGGCCR	2 cut(s)	808, 1126
AcsI	RAATTY	3 cut(s)	366, 1045, 1421
AcuI	CTGAAG	1 cut(s)	1353
AdeI	CACNNNGTG	1 cut(s)	1319
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	877
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	6 cut(s)	669, 748, 774, 898, 910, 1050
AjnI	CCWGG	2 cut(s)	229, 1315
AleI	CACNNNNGTG	1 cut(s)	938
Alw21I	GWGCWC	3 cut(s)	611, 971, 1310
Alw26I	GTCTC	5 cut(s)	395, 495, 522, 609, 640
AlwI	GGATC	2 cut(s)	554, 567
AlwNI	CAGNNNCTG	1 cut(s)	1165
AoxI	GGCC	2 cut(s)	808, 1126
ApeKI	GCWGC	6 cut(s)	254, 298, 301, 794, 797, 1165
ApoI	RAATTY	3 cut(s)	366, 1045, 1421
AspLEI	GCGC	1 cut(s)	851
AspS9I	GGNCC	2 cut(s)	1089, 1322
AsuHPI	GGTGA	8 cut(s)	74, 130, 136, 361, 463, 477, 796, 1211
AvaII	GGWCC	2 cut(s)	1089, 1322
AxyI	CCTNAGG	1 cut(s)	337
BalI	TGGCCA	2 cut(s)	810, 1128
BamHI	GGATCC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	4 cut(s)	971, 1145, 1292, 1310
Bbv12I	GWGCWC	3 cut(s)	611, 971, 1310
BbvI	GCAGC	6 cut(s)	241, 310, 313, 781, 784, 1152
BccI	CCATC	8 cut(s)	64, 87, 109, 161, 476, 490, 584, 1097
BciT130I	CCWGG	2 cut(s)	231, 1317
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	5 cut(s)	395, 495, 522, 609, 640
BfaI	CTAG	2 cut(s)	180, 549
BfmI	CTRYAG	3 cut(s)	296, 1004, 1390
BfoI	RGCGCY	1 cut(s)	852
BisI	GCNGC	6 cut(s)	255, 299, 302, 795, 798, 1166
BlsI	GCNGC	6 cut(s)	256, 300, 303, 796, 799, 1167
Bme1390I	CCNGG	2 cut(s)	231, 1317
Bme18I	GGWCC	2 cut(s)	1089, 1322
BmgT120I	GGNCC	2 cut(s)	1089, 1322
BmiI	GGNNCC	2 cut(s)	285, 561
BmrFI	CCNGG	2 cut(s)	231, 1317
BmsI	GCATC	4 cut(s)	117, 809, 879, 1072
BpmI	CTGGAG	2 cut(s)	363, 595
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	6 cut(s)	229, 230, 569, 780, 997, 1345
Bsc4I	CCNNNNNNNGG	1 cut(s)	877
Bse1I	ACTGG	2 cut(s)	833, 1356
Bse21I	CCTNAGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	1350
BseBI	CCWGG	2 cut(s)	231, 1317
BseDI	CCNNGG	6 cut(s)	229, 230, 569, 780, 997, 1345
BseGI	GGATG	3 cut(s)	1175, 1290, 1308
BseLI	CCNNNNNNNGG	1 cut(s)	877
BseMI	GCAATG	1 cut(s)	1350
BseMII	CTCAG	3 cut(s)	351, 398, 1086
BseNI	ACTGG	2 cut(s)	833, 1356
BseRI	GAGGAG	3 cut(s)	250, 534, 1050
BseXI	GCAGC	6 cut(s)	241, 310, 313, 781, 784, 1152
BshFI	GGCC	2 cut(s)	810, 1128
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	611, 971, 1310
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	877
BsmAI	GTCTC	5 cut(s)	395, 495, 522, 609, 640
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	2 cut(s)	810, 1128
Bsp1286I	GDGCHC	5 cut(s)	611, 971, 1145, 1292, 1310
Bsp143I	GATC	2 cut(s)	559, 628
Bsp19I	CCATGG	2 cut(s)	569, 780
BspANI	GGCC	2 cut(s)	810, 1128
BspCNI	CTCAG	3 cut(s)	350, 397, 1087
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	285, 561
BspMAI	CTGCAG	2 cut(s)	300, 1008
BspPI	GGATC	2 cut(s)	554, 567
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	1350
BsrI	ACTGG	2 cut(s)	833, 1356
BssECI	CCNNGG	6 cut(s)	229, 230, 569, 780, 997, 1345
BssMI	GATC	2 cut(s)	559, 628
BssT1I	CCWWGG	4 cut(s)	569, 780, 997, 1345
Bst2UI	CCWGG	2 cut(s)	231, 1317
Bst4CI	ACNGT	3 cut(s)	124, 412, 456
Bst6I	CTCTTC	2 cut(s)	387, 1130
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	2 cut(s)	436, 926
BstDEI	CTNAG	3 cut(s)	337, 384, 1095
BstDSI	CCRYGG	2 cut(s)	569, 780
BstF5I	GGATG	3 cut(s)	1175, 1290, 1308
BstH2I	RGCGCY	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	2 cut(s)	562, 631
BstMAI	GTCTC	5 cut(s)	395, 495, 522, 609, 640
BstMBI	GATC	2 cut(s)	559, 628
BstMWI	GCNNNNNNNGC	5 cut(s)	857, 889, 921, 1376, 1395
BstNI	CCWGG	2 cut(s)	231, 1317
BstNSI	RCATGY	4 cut(s)	438, 535, 680, 724
BstSCI	CCNGG	2 cut(s)	229, 1315
BstSFI	CTRYAG	3 cut(s)	296, 1004, 1390
BstV1I	GCAGC	6 cut(s)	241, 310, 313, 781, 784, 1152
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	3 cut(s)	570, 823, 1299
BstYI	RGATCY	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	810, 1128
BtgI	CCRYGG	2 cut(s)	569, 780
BtsCI	GGATG	3 cut(s)	1175, 1290, 1308
BtsI	GCAGTG	2 cut(s)	160, 649
BtsIMutI	CAGTG	3 cut(s)	160, 649, 1092
Cac8I	GCNNGC	2 cut(s)	436, 926
CaiI	CAGNNNCTG	1 cut(s)	1165
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	851
Cfr13I	GGNCC	2 cut(s)	1089, 1322
CsiI	ACCWGGT	1 cut(s)	1315
Csp6I	GTAC	1 cut(s)	192
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	3 cut(s)	337, 384, 1095
DpnI	GATC	2 cut(s)	561, 630
DpnII	GATC	2 cut(s)	559, 628
DraI	TTTAAA	1 cut(s)	1044
DraIII	CACNNNGTG	1 cut(s)	1319
EaeI	YGGCCR	2 cut(s)	808, 1126
Eam1104I	CTCTTC	2 cut(s)	387, 1130
EarI	CTCTTC	2 cut(s)	387, 1130
Ecl136II	GAGCTC	2 cut(s)	969, 1308
Eco130I	CCWWGG	4 cut(s)	569, 780, 997, 1345
Eco24I	GRGCYC	4 cut(s)	971, 1145, 1292, 1310
Eco47I	GGWCC	2 cut(s)	1089, 1322
Eco53kI	GAGCTC	2 cut(s)	969, 1308
Eco57I	CTGAAG	1 cut(s)	1353
Eco81I	CCTNAGG	1 cut(s)	337
EcoICRI	GAGCTC	2 cut(s)	969, 1308
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	229, 1315
EcoT14I	CCWWGG	4 cut(s)	569, 780, 997, 1345
EcoT38I	GRGCYC	4 cut(s)	971, 1145, 1292, 1310
ErhI	CCWWGG	4 cut(s)	569, 780, 997, 1345
FaqI	GGGAC	1 cut(s)	431
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	255, 299, 302, 795, 798, 1166
FokI	GGATG	3 cut(s)	1162, 1297, 1315
FriOI	GRGCYC	4 cut(s)	971, 1145, 1292, 1310
Fsp4HI	GCNGC	6 cut(s)	255, 299, 302, 795, 798, 1166
FspBI	CTAG	2 cut(s)	180, 549
GlaI	GCGC	1 cut(s)	850
GluI	GCNGC	6 cut(s)	255, 299, 302, 795, 798, 1166
GsuI	CTGGAG	2 cut(s)	363, 595
HaeII	RGCGCY	1 cut(s)	852
HaeIII	GGCC	2 cut(s)	810, 1128
HhaI	GCGC	1 cut(s)	851
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	1335
HinfI	GANTC	6 cut(s)	109, 292, 503, 683, 787, 1009
HphI	GGTGA	8 cut(s)	74, 130, 136, 361, 463, 477, 796, 1211
Hpy166II	GTNNAC	3 cut(s)	194, 1092, 1322
Hpy188I	TCNGA	7 cut(s)	114, 265, 316, 387, 633, 1014, 1264
Hpy188III	TCNNGA	8 cut(s)	137, 510, 563, 612, 626, 669, 748, 835
Hpy8I	GTNNAC	3 cut(s)	194, 1092, 1322
HpyAV	CCTTC	1 cut(s)	747
HpyCH4III	ACNGT	3 cut(s)	124, 412, 456
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	5 cut(s)	153, 298, 800, 1006, 1151
HpyF10VI	GCNNNNNNNGC	5 cut(s)	857, 889, 921, 1376, 1395
HpyF3I	CTNAG	3 cut(s)	337, 384, 1095
HpySE526I	ACGT	1 cut(s)	664
HspAI	GCGC	1 cut(s)	849
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	559, 628
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	6 cut(s)	494, 552, 614, 628, 880, 1037
Lsp1109I	GCAGC	6 cut(s)	241, 310, 313, 781, 784, 1152
LweI	GCATC	4 cut(s)	117, 809, 879, 1072
MabI	ACCWGGT	1 cut(s)	1315
MaeI	CTAG	2 cut(s)	180, 549
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	5 cut(s)	118, 784, 929, 1017, 1276
MalI	GATC	2 cut(s)	561, 630
MboI	GATC	2 cut(s)	559, 628
MboII	GAAGA	5 cut(s)	16, 115, 404, 1147, 1232
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	5 cut(s)	611, 971, 1145, 1292, 1310
MlsI	TGGCCA	2 cut(s)	810, 1128
MluCI	AATT	7 cut(s)	146, 366, 459, 884, 976, 1045, 1421
MluNI	TGGCCA	2 cut(s)	810, 1128
MlyI	GAGTC	3 cut(s)	497, 781, 1018
Mox20I	TGGCCA	2 cut(s)	810, 1128
MscI	TGGCCA	2 cut(s)	810, 1128
MseI	TTAA	4 cut(s)	458, 1043, 1154, 1434
MslI	CAYNNNNRTG	4 cut(s)	536, 574, 938, 1297
Msp20I	TGGCCA	2 cut(s)	810, 1128
MspR9I	CCNGG	2 cut(s)	231, 1317
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	2 cut(s)	231, 1317
MwoI	GCNNNNNNNGC	5 cut(s)	857, 889, 921, 1376, 1395
NcoI	CCATGG	2 cut(s)	569, 780
NdeII	GATC	2 cut(s)	559, 628
NlaIV	GGNNCC	2 cut(s)	285, 561
NmuCI	GTSAC	4 cut(s)	118, 784, 929, 1017
NspI	RCATGY	4 cut(s)	438, 535, 680, 724
OliI	CACNNNNGTG	1 cut(s)	938
PaeI	GCATGC	1 cut(s)	438
PagI	TCATGA	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	230
PciI	ACATGT	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	109, 292, 683
PkrI	GCNGC	6 cut(s)	256, 300, 303, 796, 799, 1167
PleI	GAGTC	3 cut(s)	497, 781, 1017
PpsI	GAGTC	3 cut(s)	497, 781, 1017
PscI	ACATGT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	207
Psp124BI	GAGCTC	2 cut(s)	971, 1310
Psp6I	CCWGG	2 cut(s)	229, 1315
PspGI	CCWGG	2 cut(s)	229, 1315
PspN4I	GGNNCC	2 cut(s)	285, 561
PspPI	GGNCC	2 cut(s)	1089, 1322
PstI	CTGCAG	2 cut(s)	300, 1008
PstNI	CAGNNNCTG	1 cut(s)	1165
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	4 cut(s)	536, 574, 938, 1297
SacI	GAGCTC	2 cut(s)	971, 1310
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	458, 1043, 1154, 1434
SatI	GCNGC	6 cut(s)	255, 299, 302, 795, 798, 1166
Sau3AI	GATC	2 cut(s)	559, 628
Sau96I	GGNCC	2 cut(s)	1089, 1322
SchI	GAGTC	3 cut(s)	497, 781, 1018
ScrFI	CCNGG	2 cut(s)	231, 1317
SduI	GDGCHC	5 cut(s)	611, 971, 1145, 1292, 1310
SexAI	ACCWGGT	1 cut(s)	1315
SfaNI	GCATC	4 cut(s)	117, 809, 879, 1072
SfcI	CTRYAG	3 cut(s)	296, 1004, 1390
SinI	GGWCC	2 cut(s)	1089, 1322
SmiMI	CAYNNNNRTG	4 cut(s)	536, 574, 938, 1297
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	7 cut(s)	146, 366, 459, 884, 976, 1045, 1421
SspI	AATATT	1 cut(s)	638
SspMI	CTAG	2 cut(s)	180, 549
SstI	GAGCTC	2 cut(s)	971, 1310
StyD4I	CCNGG	2 cut(s)	229, 1315
StyI	CCWWGG	4 cut(s)	569, 780, 997, 1345
TaaI	ACNGT	3 cut(s)	124, 412, 456
TaiI	ACGT	1 cut(s)	667
TasI	AATT	7 cut(s)	146, 366, 459, 884, 976, 1045, 1421
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	109, 292, 683
Tru1I	TTAA	4 cut(s)	458, 1043, 1154, 1434
Tru9I	TTAA	4 cut(s)	458, 1043, 1154, 1434
TscAI	CASTG	3 cut(s)	160, 656, 1099
TseFI	GTSAC	4 cut(s)	118, 784, 929, 1017
TseI	GCWGC	6 cut(s)	254, 298, 301, 794, 797, 1165
Tsp45I	GTSAC	4 cut(s)	118, 784, 929, 1017
TspDTI	ATGAA	7 cut(s)	17, 122, 729, 1066, 1164, 1233, 1287
TspRI	CASTG	3 cut(s)	160, 656, 1099
VpaK11BI	GGWCC	2 cut(s)	1089, 1322
XapI	RAATTY	3 cut(s)	366, 1045, 1421
XceI	RCATGY	4 cut(s)	438, 535, 680, 724
XspI	CTAG	2 cut(s)	180, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.