MD06G1121000.v1.1

Growth-regulating factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
26143211 .. 26145619
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1121000.v1.1.491

Sequence Viewer

Length: 1446 bp
ATGGGAAAAAGAAATGGGTTTGCTGAGAAGGGAGCAGCAGCAGAAACAGAGTGGCTGGGTTTGATGATGCAAAACACTCAGCAGACCCAGCAATCATTTCCTCGGAAGAAGACGATGACGGTGATGCATCATCATCCTCATCATCATGATCCTCTGCTTGCCAGTGCAGGAAGAGAAGCTTGTGGGGTTTGGGATAACAGTCCTGGTGCTGGTGGTGGACCTTTGTTTTGCAACACAAGCAATCCAGTCCCGACTTGTCCGACTGATTTATACAATCCTGTCGGTTCTGATTTTGTCCTCCCAAAGTCTCTGCAGCACCATCTGCCTTGCTCTGATCACACCTTGGCTTTCAGTTCCATAGGTGGAATGGTGAATGCGAGACTCCCTTTTACAGCAGCTCAAAGGGAAGAGCTTGAGAGACAGACAATGATTTACAAGTACATGATGGACTCTTCCCCTGTCCCTCCCCAATTACTTTTACCAACTTCCAAGAACACATCAATTGTCCCTCGTTTGTTCCCAAACTTGGTGAAGGGTTCACTGGAGTTGGGGATTTCTGGGAGCTCTGATCCGGAGCCATGGAGGTGCAAAAGAACAGATGGAAAAAAATGGAGGTGTTCCAGAGATGTAGCTCCGGATCTGAAGTACTGTGAGAGACATGCTCACAAGACCAGGAACCGTTCAAGAAAGCCTGTGGAATCCCAAACCCTAAACCCCAACTTCCTCACCAACAACAACAACATGAGAAGTCCTACGTCTAATTTTTTCAGACAAAGCAACATCACCAACCAGCAAAGTCTATATTCTAGCAACATGGTTCCTAGTGCTGCCGCTGCTGCTGGACCACATGTCCAACCCAGGTCCTTGGCTTGGTTCATGAATGGGGAAGCCCCAGCTGTGGGTGGCTCAAACCAAGAGTGGGAGCAAATGATGCAATTCAAGCTGGGCCTAAAGAGCAGCAGTCACAACTACACAAAGCCTACTAACACAGATGTGGATGTTCCAAAGCAACAAACTGAAGGCTCACTGAATTTGCACACAGATTACAGCGGTGAAATCCAAGGCCTGCAAATTCAACAGACAAGGCATTTCATTGATGCATGGTCAACATCAACGTCAGCAGAGAGAGAAGAAGATAGAGTTTTTGTTTCTCCAAACCAGAAGCTGCCCTTTTCATCTCTCACTCTATCAATGTCTGGAGGGGAAGGAAGCAATGAAGAGAGGGAAAATACCCAAATGGGGCTTGGGGTTTTGGGGGAAGAGAGGGAAAGTGTTGGGGGTTTGAAGTCCCAGTGGATGAACCCTATGTCATGGATGATGGGGTCACCACCTGGTGGACCATTGGCTGAAGCTTTGTGCCTTGGCATTGCTGGTGGATCTAAAGGCTGCAACAGTGGCTCCACGAGCTGTAAGAGCTCTAGTGGACATGGTAGGCAAGAATTTTGA

Protein Analysis

482

Amino Acids

52.74

Weight (kDa)

8.28

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 129 - 161 1.1e-10 QLQ
WRC PF08879 191 - 233 2.9e-19 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1334
AccIII TCCGGA 2 cut(s) 571, 634
AciI CCGC 2 cut(s) 831, 1050
AclWI GGATC 4 cut(s) 143, 563, 645, 1384
AcsI RAATTY 3 cut(s) 1030, 1071, 1439
AcuI CTGAAG 3 cut(s) 662, 1038, 1368
AdeI CACNNNGTG 1 cut(s) 1334
AfaI GTAC 2 cut(s) 440, 647
AfiI CCNNNNNNNGG 8 cut(s) 209, 526, 870, 898, 899, 919, 1239, 1334
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 4 cut(s) 684, 940, 1076, 1285
AhdI GACNNNNNGTC 1 cut(s) 848
AjnI CCWGG 4 cut(s) 202, 671, 857, 1330
AleI CACNNNNGTG 1 cut(s) 992
Alw21I GWGCWC 2 cut(s) 566, 1418
Alw26I GTCTC 4 cut(s) 312, 373, 412, 649
AlwI GGATC 4 cut(s) 143, 563, 645, 1384
AlwNI CAGNNNCTG 1 cut(s) 1165
Aor13HI TCCGGA 2 cut(s) 571, 634
AoxI GGCC 2 cut(s) 946, 1063
ApoI RAATTY 3 cut(s) 1030, 1071, 1439
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspS9I GGNCC 5 cut(s) 218, 842, 861, 946, 1337
AsuHPI GGTGA 7 cut(s) 133, 382, 541, 718, 775, 1064, 1317
AvaII GGWCC 4 cut(s) 218, 842, 861, 1337
BanII GRGCYC 2 cut(s) 566, 1418
BauI CACGAG 1 cut(s) 1402
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 2 cut(s) 566, 1418
BccI CCATC 4 cut(s) 327, 439, 593, 1312
BciT130I CCWGG 4 cut(s) 204, 673, 859, 1332
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 4 cut(s) 312, 373, 412, 649
BfaI CTAG 3 cut(s) 807, 822, 1419
BfmI CTRYAG 1 cut(s) 311
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 4 cut(s) 204, 673, 859, 1332
Bme18I GGWCC 4 cut(s) 218, 842, 861, 1337
BmeRI GACNNNNNGTC 1 cut(s) 848
BmgT120I GGNCC 5 cut(s) 218, 842, 861, 946, 1337
BmiI GGNNCC 4 cut(s) 576, 677, 819, 1399
BmrFI CCNGG 4 cut(s) 204, 673, 859, 1332
BmrI ACTGGG 1 cut(s) 1285
BmsI GCATC 5 cut(s) 57, 114, 136, 921, 1087
BmuI ACTGGG 1 cut(s) 1285
BpiI GAAGAC 1 cut(s) 116
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpmI CTGGAG 2 cut(s) 563, 1218
BpuEI CTTGAG 1 cut(s) 434
BsaJI CCNNGG 7 cut(s) 101, 342, 578, 857, 864, 1060, 1360
BsaWI WCCGGW 2 cut(s) 571, 634
BsaXI ACNNNNNCTCC 2 cut(s) 1382, 1412
Bsc4I CCNNNNNNNGG 8 cut(s) 209, 526, 870, 898, 899, 919, 1239, 1334
Bse1I ACTGG 4 cut(s) 162, 245, 546, 1291
Bse3DI GCAATG 2 cut(s) 1219, 1365
BseAI TCCGGA 2 cut(s) 571, 634
BseBI CCWGG 4 cut(s) 204, 673, 859, 1332
BseDI CCNNGG 7 cut(s) 101, 342, 578, 857, 864, 1060, 1360
BseGI GGATG 4 cut(s) 133, 1003, 1302, 1320
BseLI CCNNNNNNNGG 8 cut(s) 209, 526, 870, 898, 899, 919, 1239, 1334
BseMI GCAATG 2 cut(s) 1219, 1365
BseMII CTCAG 2 cut(s) 15, 92
BseNI ACTGG 4 cut(s) 162, 245, 546, 1291
BseYI CCCAGC 4 cut(s) 55, 87, 892, 943
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 2 cut(s) 948, 1065
BsiHKAI GWGCWC 2 cut(s) 566, 1418
BsiSI CCGG 2 cut(s) 572, 635
BslFI GGGAC 4 cut(s) 233, 446, 491, 1273
BslI CCNNNNNNNGG 8 cut(s) 209, 526, 870, 898, 899, 919, 1239, 1334
BsmAI GTCTC 4 cut(s) 312, 373, 412, 649
BsmFI GGGAC 4 cut(s) 233, 446, 491, 1273
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 948, 1065
Bsp1286I GDGCHC 2 cut(s) 566, 1418
Bsp13I TCCGGA 2 cut(s) 571, 634
Bsp143I GATC 5 cut(s) 148, 334, 568, 637, 1376
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 2 cut(s) 831, 1050
BspANI GGCC 2 cut(s) 948, 1065
BspCNI CTCAG 2 cut(s) 16, 91
BspEI TCCGGA 2 cut(s) 571, 634
BspHI TCATGA 2 cut(s) 145, 876
BspLI GGNNCC 4 cut(s) 576, 677, 819, 1399
BspMAI CTGCAG 1 cut(s) 315
BspPI GGATC 4 cut(s) 143, 563, 645, 1384
BspQI GCTCTTC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 1219, 1365
BsrI ACTGG 4 cut(s) 162, 245, 546, 1291
BssECI CCNNGG 7 cut(s) 101, 342, 578, 857, 864, 1060, 1360
BssMI GATC 5 cut(s) 148, 334, 568, 637, 1376
BssSI CACGAG 1 cut(s) 1402
BssT1I CCWWGG 5 cut(s) 342, 578, 864, 1060, 1360
Bst2BI CACGAG 1 cut(s) 1402
Bst2UI CCWGG 4 cut(s) 204, 673, 859, 1332
Bst4CI ACNGT 5 cut(s) 121, 200, 650, 680, 1394
Bst6I CTCTTC 5 cut(s) 166, 402, 457, 1212, 1254
BstAPI GCANNNNNTGC 2 cut(s) 322, 931
BstC8I GCNNGC 2 cut(s) 159, 1067
BstDEI CTNAG 2 cut(s) 24, 78
BstDSI CCRYGG 1 cut(s) 578
BstEII GGTNACC 1 cut(s) 1323
BstF5I GGATG 4 cut(s) 133, 1003, 1302, 1320
BstKTI GATC 5 cut(s) 151, 337, 571, 640, 1379
BstMAI GTCTC 4 cut(s) 312, 373, 412, 649
BstMBI GATC 5 cut(s) 148, 334, 568, 637, 1376
BstNI CCWGG 4 cut(s) 204, 673, 859, 1332
BstNSI RCATGY 2 cut(s) 662, 851
BstPI GGTNACC 1 cut(s) 1323
BstSCI CCNGG 4 cut(s) 202, 671, 857, 1330
BstSFI CTRYAG 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 2 cut(s) 637, 1376
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 2 cut(s) 637, 1376
BsuRI GGCC 2 cut(s) 948, 1065
BtgI CCRYGG 1 cut(s) 578
BtsCI GGATG 4 cut(s) 133, 1003, 1302, 1320
BtsIMutI CAGTG 5 cut(s) 169, 539, 1025, 1298, 1399
Cac8I GCNNGC 2 cut(s) 159, 1067
CaiI CAGNNNCTG 1 cut(s) 1165
CciI TCATGA 2 cut(s) 145, 876
Cfr13I GGNCC 5 cut(s) 218, 842, 861, 946, 1337
CsiI ACCWGGT 1 cut(s) 1330
Csp6I GTAC 2 cut(s) 439, 646
CviQI GTAC 2 cut(s) 439, 646
DdeI CTNAG 2 cut(s) 24, 78
DpnI GATC 5 cut(s) 150, 336, 570, 639, 1378
DpnII GATC 5 cut(s) 148, 334, 568, 637, 1376
DraIII CACNNNGTG 1 cut(s) 1334
DriI GACNNNNNGTC 1 cut(s) 848
Eam1104I CTCTTC 5 cut(s) 166, 402, 457, 1212, 1254
Eam1105I GACNNNNNGTC 1 cut(s) 848
EarI CTCTTC 5 cut(s) 166, 402, 457, 1212, 1254
Ecl136II GAGCTC 2 cut(s) 564, 1416
Eco130I CCWWGG 5 cut(s) 342, 578, 864, 1060, 1360
Eco147I AGGCCT 1 cut(s) 1065
Eco24I GRGCYC 2 cut(s) 566, 1418
Eco47I GGWCC 4 cut(s) 218, 842, 861, 1337
Eco53kI GAGCTC 2 cut(s) 564, 1416
Eco57I CTGAAG 3 cut(s) 662, 1038, 1368
Eco91I GGTNACC 1 cut(s) 1323
EcoICRI GAGCTC 2 cut(s) 564, 1416
EcoO109I RGGNCCY 1 cut(s) 861
EcoO65I GGTNACC 1 cut(s) 1323
EcoRII CCWGG 4 cut(s) 202, 671, 857, 1330
EcoT14I CCWWGG 5 cut(s) 342, 578, 864, 1060, 1360
EcoT22I ATGCAT 2 cut(s) 129, 1102
EcoT38I GRGCYC 2 cut(s) 566, 1418
ErhI CCWWGG 5 cut(s) 342, 578, 864, 1060, 1360
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 1154, 1186
FaqI GGGAC 4 cut(s) 233, 446, 491, 1273
FbaI TGATCA 1 cut(s) 334
FokI GGATG 4 cut(s) 120, 1010, 1309, 1327
FriOI GRGCYC 2 cut(s) 566, 1418
FspBI CTAG 3 cut(s) 807, 822, 1419
GsaI CCCAGC 4 cut(s) 59, 91, 896, 947
GsuI CTGGAG 2 cut(s) 563, 1218
HaeIII GGCC 2 cut(s) 948, 1065
HapII CCGG 2 cut(s) 572, 635
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 2 cut(s) 177, 1350
HinfI GANTC 3 cut(s) 381, 449, 698
HpaII CCGG 2 cut(s) 572, 635
HphI GGTGA 7 cut(s) 133, 382, 541, 718, 775, 1064, 1317
Hpy166II GTNNAC 5 cut(s) 218, 539, 1107, 1337, 1424
Hpy188I TCNGA 7 cut(s) 105, 261, 289, 334, 568, 642, 770
Hpy188III TCNNGA 8 cut(s) 146, 250, 572, 621, 635, 684, 877, 1197
Hpy8I GTNNAC 5 cut(s) 218, 539, 1107, 1337, 1424
HpyAV CCTTC 4 cut(s) 22, 526, 1013, 1199
HpyCH4III ACNGT 5 cut(s) 121, 200, 650, 680, 1394
HpyCH4IV ACGT 2 cut(s) 755, 1115
HpyF3I CTNAG 2 cut(s) 24, 78
HpySE526I ACGT 2 cut(s) 755, 1115
Kpn2I TCCGGA 2 cut(s) 571, 634
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 148, 334, 568, 637, 1376
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 6 cut(s) 32, 561, 574, 637, 922, 1403
LweI GCATC 5 cut(s) 57, 114, 136, 921, 1087
MabI ACCWGGT 1 cut(s) 1330
MaeI CTAG 3 cut(s) 807, 822, 1419
MaeII ACGT 2 cut(s) 755, 1115
MaeIII GTNAC 2 cut(s) 962, 1323
MalI GATC 5 cut(s) 150, 336, 570, 639, 1378
MboI GATC 5 cut(s) 148, 334, 568, 637, 1376
MboII GAAGA 9 cut(s) 118, 121, 183, 419, 444, 1142, 1145, 1229, 1271
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 2 cut(s) 637, 1376
MhlI GDGCHC 2 cut(s) 566, 1418
MluCI AATT 7 cut(s) 470, 501, 760, 935, 1030, 1071, 1439
MlyI GAGTC 2 cut(s) 375, 443
MmeI TCCRAC 2 cut(s) 284, 877
Mph1103I ATGCAT 2 cut(s) 129, 1102
MroI TCCGGA 2 cut(s) 571, 634
MslI CAYNNNNRTG 3 cut(s) 144, 583, 992
MspA1I CMGCKG 3 cut(s) 833, 896, 1050
MspI CCGG 2 cut(s) 572, 635
MspR9I CCNGG 4 cut(s) 204, 673, 859, 1332
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 4 cut(s) 204, 673, 859, 1332
NcoI CCATGG 1 cut(s) 578
NdeII GATC 5 cut(s) 148, 334, 568, 637, 1376
NlaIV GGNNCC 4 cut(s) 576, 677, 819, 1399
NmuCI GTSAC 2 cut(s) 962, 1323
NsiI ATGCAT 2 cut(s) 129, 1102
NspI RCATGY 2 cut(s) 662, 851
OliI CACNNNNGTG 1 cut(s) 992
PagI TCATGA 2 cut(s) 145, 876
PceI AGGCCT 1 cut(s) 1065
PciI ACATGT 1 cut(s) 847
PciSI GCTCTTC 1 cut(s) 402
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 698
PflMI CCANNNNNTGG 1 cut(s) 1334
PleI GAGTC 2 cut(s) 375, 443
PpsI GAGTC 2 cut(s) 375, 443
PpuMI RGGWCCY 1 cut(s) 861
PscI ACATGT 1 cut(s) 847
Psp124BI GAGCTC 2 cut(s) 566, 1418
Psp5II RGGWCCY 1 cut(s) 861
Psp6I CCWGG 4 cut(s) 202, 671, 857, 1330
PspEI GGTNACC 1 cut(s) 1323
PspFI CCCAGC 4 cut(s) 55, 87, 892, 943
PspGI CCWGG 4 cut(s) 202, 671, 857, 1330
PspN4I GGNNCC 4 cut(s) 576, 677, 819, 1399
PspPI GGNCC 5 cut(s) 218, 842, 861, 946, 1337
PspPPI RGGWCCY 1 cut(s) 861
PstI CTGCAG 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 1165
PsuI RGATCY 2 cut(s) 637, 1376
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 2 cut(s) 440, 647
RsaNI GTAC 2 cut(s) 439, 646
RseI CAYNNNNRTG 3 cut(s) 144, 583, 992
SacI GAGCTC 2 cut(s) 566, 1418
SapI GCTCTTC 1 cut(s) 402
Sau3AI GATC 5 cut(s) 148, 334, 568, 637, 1376
Sau96I GGNCC 5 cut(s) 218, 842, 861, 946, 1337
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 2 cut(s) 375, 443
ScrFI CCNGG 4 cut(s) 204, 673, 859, 1332
SduI GDGCHC 2 cut(s) 566, 1418
SexAI ACCWGGT 1 cut(s) 1330
SfaNI GCATC 5 cut(s) 57, 114, 136, 921, 1087
SfcI CTRYAG 1 cut(s) 311
SinI GGWCC 4 cut(s) 218, 842, 861, 1337
SmiMI CAYNNNNRTG 3 cut(s) 144, 583, 992
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 7 cut(s) 470, 501, 760, 935, 1030, 1071, 1439
SseBI AGGCCT 1 cut(s) 1065
SsiI CCGC 2 cut(s) 831, 1050
SspMI CTAG 3 cut(s) 807, 822, 1419
SstI GAGCTC 2 cut(s) 566, 1418
StuI AGGCCT 1 cut(s) 1065
StyD4I CCNGG 4 cut(s) 202, 671, 857, 1330
StyI CCWWGG 5 cut(s) 342, 578, 864, 1060, 1360
TaaI ACNGT 5 cut(s) 121, 200, 650, 680, 1394
TaiI ACGT 2 cut(s) 758, 1118
TasI AATT 7 cut(s) 470, 501, 760, 935, 1030, 1071, 1439
TatI WGTACW 2 cut(s) 438, 645
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 1 cut(s) 698
TscAI CASTG 5 cut(s) 169, 546, 1032, 1298, 1399
TseFI GTSAC 2 cut(s) 962, 1323
Tsp45I GTSAC 2 cut(s) 962, 1323
TspDTI ATGAA 6 cut(s) 865, 893, 1081, 1164, 1230, 1313
TspRI CASTG 5 cut(s) 169, 546, 1032, 1298, 1399
Van91I CCANNNNNTGG 1 cut(s) 1334
VpaK11BI GGWCC 4 cut(s) 218, 842, 861, 1337
XapI RAATTY 3 cut(s) 1030, 1071, 1439
XceI RCATGY 2 cut(s) 662, 851
XcmI CCANNNNNNNNNTGG 2 cut(s) 364, 1241
XspI CTAG 3 cut(s) 807, 822, 1419
ZrmI AGTACT 1 cut(s) 647
Zsp2I ATGCAT 2 cut(s) 129, 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.