Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007981

Physical Location & Seq

Genomic Coordinates Forward (+)

6534694 .. 6535778

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG086700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAGAGTAGGAGAAATGGGTTTGTGGAAACAGAAACAGAGTGTTGTGATATTGGGTTGGGTTTGATGATGGAAACCCATCACCAATCATTTCCTTGTAAGAAGATGAATCAGATGGTGACGGTGATGCCTCATCATGAGCCTCAATTTTGCAGTGGTGGTTTTGATGGAGAAACAGCTGGTAGTAATAGTACACCTTTGTTTTATAACACAAGCAACAACAGCAACCCAGGGATTACTGATATATACAATGCTGCCTCCTCTGATTTTGGTTCAGTTGTGGTGCCAAAGAATCTGCAGCAGCCTTACTACTCTGATAGTTTGTCTTTCAGTTCCTCAGTAGGTGGAATGGTGAATGTGAATGTTAGAATTCCTTTTACTCCAGCTCAGAGAGAAGAGCTTGAGACACAGACTGTGATTTACAAGTATATCATGGCATGCCTCCCTGTCCCTCAACAGTTAATTCTTTCCATCACCAACAATCCATCACCAAATGGAGCAAGAGACTCATCAAATACAAGAGGAGTGAGAGACATGTTGGTGGGATTTTCTAGGAGCTTGGATCCAGAGCCATGGAGGTGTAAGAGAACCGATGGTAAGAAATGGAGGTGCTCCAGAGACATAGCTCCCGATCAGAAATATTGTGAGAGACACTGCCACAAAAGACGTTCAAGAAAGCATGTGGAATCAATCCCCAACTTACTCAACAACAAGAATGCTAACATGCTAAATCCAAAGCCTTCATCTTTCAAGAATAACAATCAAACTCCATTTTCAAGTTCCATGGTGACTCCTGCTGCTGCATCACATGGCCAACCCAGGTGGGTTAAATATTCAAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

281

Amino Acids

31.51

Weight (kDa)

9.14

Isoelectric Point (pI)

58.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	125 - 158	1.8e-11	QLQ
WRC	PF08879	189 - 227	4.2e-17	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24150 AT4G24150 AT4G24150
fragaria_vesca	FvH4_5g10750 FvH4_5g10750 FvH4_5g10750 FvH4_5g10750
malus_domestica	MD06G1121000.v1.1 MD14G1137600.v1.1
prunus_persica	Prupe.5G131600_v2.0.a1 Prupe.5G131600_v2.0.a1
pyrus_communis	pycom06g11230 pycom14g11280
rosa_chinensis	RchiOBHm_Chr7g0187381
rosa_laevigata	RLG00000004788
rosa_multiflora	Rmu_sc0002110.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267510
rosa_rugosa	Rorug06G0481200
rosa_samantha	Rh7AG085600 Rh7BG087000 Rh7CG086700 Rh7CG086800 Rh7DG087800
rosa_wichuraiana	Rw7G007540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	283
AclWI	GGATC	2 cut(s)	557, 570
AcoI	YGGCCR	1 cut(s)	811
AcsI	RAATTY	1 cut(s)	369
AfaI	GTAC	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	4 cut(s)	672, 751, 777, 837
AjnI	CCWGG	2 cut(s)	229, 818
AluBI	AGCT	5 cut(s)	179, 386, 400, 558, 626
AluI	AGCT	5 cut(s)	179, 386, 400, 558, 626
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	5 cut(s)	398, 498, 525, 612, 643
AlwI	GGATC	2 cut(s)	557, 570
AoxI	GGCC	1 cut(s)	811
ApeKI	GCWGC	5 cut(s)	254, 298, 301, 797, 800
ApoI	RAATTY	1 cut(s)	369
AsuHPI	GGTGA	7 cut(s)	74, 130, 136, 364, 466, 480, 799
BalI	TGGCCA	1 cut(s)	813
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	5 cut(s)	241, 310, 313, 784, 787
BccI	CCATC	7 cut(s)	64, 87, 109, 161, 479, 493, 587
BciT130I	CCWGG	2 cut(s)	231, 820
BcoDI	GTCTC	5 cut(s)	398, 498, 525, 612, 643
BfaI	CTAG	1 cut(s)	552
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	5 cut(s)	255, 299, 302, 798, 801
BlsI	GCNGC	5 cut(s)	256, 300, 303, 799, 802
Bme1390I	CCNGG	2 cut(s)	231, 820
BmiI	GGNNCC	2 cut(s)	285, 564
BmrFI	CCNGG	2 cut(s)	231, 820
BmsI	GCATC	2 cut(s)	117, 812
BpmI	CTGGAG	2 cut(s)	366, 598
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	5 cut(s)	229, 230, 572, 783, 818
BseBI	CCWGG	2 cut(s)	231, 820
BseDI	CCNNGG	5 cut(s)	229, 230, 572, 783, 818
BseMII	CTCAG	2 cut(s)	351, 401
BseRI	GAGGAG	2 cut(s)	250, 537
BseXI	GCAGC	5 cut(s)	241, 310, 313, 784, 787
BshFI	GGCC	1 cut(s)	813
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	434
BsmAI	GTCTC	5 cut(s)	398, 498, 525, 612, 643
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	813
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	2 cut(s)	562, 631
Bsp19I	CCATGG	2 cut(s)	572, 783
BspANI	GGCC	1 cut(s)	813
BspCNI	CTCAG	2 cut(s)	350, 400
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	285, 564
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	2 cut(s)	557, 570
BspQI	GCTCTTC	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	283
BssECI	CCNNGG	5 cut(s)	229, 230, 572, 783, 818
BssMI	GATC	2 cut(s)	562, 631
BssT1I	CCWWGG	2 cut(s)	572, 783
Bst2UI	CCWGG	2 cut(s)	231, 820
Bst4CI	ACNGT	3 cut(s)	124, 415, 459
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	337, 387
BstDSI	CCRYGG	2 cut(s)	572, 783
BstKTI	GATC	2 cut(s)	565, 634
BstMAI	GTCTC	5 cut(s)	398, 498, 525, 612, 643
BstMBI	GATC	2 cut(s)	562, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	2 cut(s)	231, 820
BstNSI	RCATGY	4 cut(s)	441, 538, 683, 727
BstSCI	CCNGG	2 cut(s)	229, 818
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	5 cut(s)	241, 310, 313, 784, 787
BstX2I	RGATCY	1 cut(s)	562
BstXI	CCANNNNNNTGG	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	813
BtgI	CCRYGG	2 cut(s)	572, 783
BtsI	GCAGTG	2 cut(s)	160, 652
BtsIMutI	CAGTG	2 cut(s)	160, 652
Cac8I	GCNNGC	1 cut(s)	439
CciI	TCATGA	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	803, 838
CviAII	CATG	9 cut(s)	137, 433, 438, 535, 573, 680, 724, 784, 809
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	337, 387
DpnI	GATC	2 cut(s)	564, 633
DpnII	GATC	2 cut(s)	562, 631
EaeI	YGGCCR	1 cut(s)	811
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	2 cut(s)	572, 783
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	229, 818
EcoT14I	CCWWGG	2 cut(s)	572, 783
ErhI	CCWWGG	2 cut(s)	572, 783
FaeI	CATG	9 cut(s)	140, 436, 441, 538, 576, 683, 727, 787, 812
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	9 cut(s)	136, 432, 437, 534, 572, 679, 723, 783, 808
Fnu4HI	GCNGC	5 cut(s)	255, 299, 302, 798, 801
Fsp4HI	GCNGC	5 cut(s)	255, 299, 302, 798, 801
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	5 cut(s)	255, 299, 302, 798, 801
GsuI	CTGGAG	2 cut(s)	366, 598
HaeIII	GGCC	1 cut(s)	813
Hin1II	CATG	9 cut(s)	140, 436, 441, 538, 576, 683, 727, 787, 812
HinfI	GANTC	5 cut(s)	109, 292, 506, 686, 790
HphI	GGTGA	7 cut(s)	74, 130, 136, 364, 466, 480, 799
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	5 cut(s)	114, 265, 316, 390, 636
Hpy188III	TCNNGA	6 cut(s)	137, 566, 615, 629, 672, 751
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	750
HpyCH4III	ACNGT	3 cut(s)	124, 415, 459
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	3 cut(s)	153, 298, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	337, 387
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	9 cut(s)	140, 436, 441, 538, 576, 683, 727, 787, 812
Kzo9I	GATC	2 cut(s)	562, 631
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	4 cut(s)	497, 555, 617, 631
Lsp1109I	GCAGC	5 cut(s)	241, 310, 313, 784, 787
LweI	GCATC	2 cut(s)	117, 812
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	118, 787
MalI	GATC	2 cut(s)	564, 633
MboI	GATC	2 cut(s)	562, 631
MboII	GAAGA	3 cut(s)	16, 115, 407
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	614
MlsI	TGGCCA	1 cut(s)	813
MluCI	AATT	3 cut(s)	146, 369, 462
MluNI	TGGCCA	1 cut(s)	813
MlyI	GAGTC	2 cut(s)	500, 784
Mox20I	TGGCCA	1 cut(s)	813
MscI	TGGCCA	1 cut(s)	813
MseI	TTAA	3 cut(s)	461, 828, 844
MslI	CAYNNNNRTG	2 cut(s)	539, 577
Msp20I	TGGCCA	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	231, 820
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	2 cut(s)	231, 820
MwoI	GCNNNNNNNGC	1 cut(s)	222
NcoI	CCATGG	2 cut(s)	572, 783
NdeII	GATC	2 cut(s)	562, 631
NlaIII	CATG	9 cut(s)	140, 436, 441, 538, 576, 683, 727, 787, 812
NlaIV	GGNNCC	2 cut(s)	285, 564
NmuCI	GTSAC	2 cut(s)	118, 787
NspI	RCATGY	4 cut(s)	441, 538, 683, 727
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	230
PciI	ACATGT	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	390
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	109, 292, 686
PkrI	GCNGC	5 cut(s)	256, 300, 303, 799, 802
PleI	GAGTC	2 cut(s)	500, 784
PpsI	GAGTC	2 cut(s)	500, 784
PscI	ACATGT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	229, 818
PspGI	CCWGG	2 cut(s)	229, 818
PspN4I	GGNNCC	2 cut(s)	285, 564
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	2 cut(s)	539, 577
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	461, 828, 844
SatI	GCNGC	5 cut(s)	255, 299, 302, 798, 801
Sau3AI	GATC	2 cut(s)	562, 631
SchI	GAGTC	2 cut(s)	500, 784
ScrFI	CCNGG	2 cut(s)	231, 820
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	2 cut(s)	117, 812
SfcI	CTRYAG	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	539, 577
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	3 cut(s)	146, 369, 462
SspI	AATATT	2 cut(s)	641, 833
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	229, 818
StyI	CCWWGG	2 cut(s)	572, 783
TaaI	ACNGT	3 cut(s)	124, 415, 459
TaiI	ACGT	1 cut(s)	670
TasI	AATT	3 cut(s)	146, 369, 462
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	109, 292, 686
Tru1I	TTAA	3 cut(s)	461, 828, 844
Tru9I	TTAA	3 cut(s)	461, 828, 844
TscAI	CASTG	2 cut(s)	160, 659
TseFI	GTSAC	2 cut(s)	118, 787
TseI	GCWGC	5 cut(s)	254, 298, 301, 797, 800
Tsp45I	GTSAC	2 cut(s)	118, 787
TspDTI	ATGAA	3 cut(s)	17, 122, 732
TspRI	CASTG	2 cut(s)	160, 659
XapI	RAATTY	1 cut(s)	369
XceI	RCATGY	4 cut(s)	441, 538, 683, 727
XspI	CTAG	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.