Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Forward (+)

7488511 .. 7491630

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2874 bp

ATGGCCTCACTGGCACCACCACCACTCCCATTCTCATATCATCATCCTCATCACCCCCTTCTTCCCAAACCCTCCATTTTCACTCCCAAAGCTTCACTCTCTTTCTCTCCCACACAAACCACCTCTCCCTCTCCCCTCCAAGACCTCAACCGCCTCTGCAACTCCGGCAACCTCACCGCCGCCCTCACCCTCCTCCAAACCAACACCTTCCCCACCTCCCAGCACCTCAAAGACGCCATCGGCGCCCTCCTCCAGGCCTGCGGCCGCCACAACGACATCCAAACCGGCCGCAAACTCCACCGCCTCGTCTCCCAATCCACCATCTTCACCCACGACGTCGTCCTCAACACTCGCATCATCACCATGTACTCCATGTGCAACTCTCCCTCCGACTCCCGCCATGTTTTCGATGCCTTACCGAGAAAGAACCTGTTTCAGTGGAATGCTATGGTTAGTGGGTACTCAAGAAACAATCTTAACGCTGAAGCAATTGATACTTTCATTGAATTGTTACGCGCCGCGGAGTTTAAACCCGATAATTTTACAATGCCGTGTGTGATTAAGGCCTGTGGTGGGGTTTTGGACGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATGGGTCTGGTTTCGGATGTGTTTATTGGGAATGCTTTGATTGCGTTGTATGCGAAATTTGGGATGCTAAGGGATGCAGTTAAGATGTTTGACAAAATGCCTGAGAGAAATTTGGTTTCTTGGAATTCGATGATTGGGGGGTTTTCGGAGAATGGGATGTGTGAAGAGAGTTTTGGGCTGTTGGTGAGGTTTTTGGAGGGTGAGGAGGGATTTGTGCCGGATGAGGCGACGTTGGTGACTGTCTTGCCAGTTTGCGGTGGGAAGGGGGAGGTTAAAATGGGGATGGAGATTCATGGTTTGGCGGTGAAGTTGGGGATTAATAAGGAGTTGATGTTGAGTAATGCGTTGATGGATATGTATTTGAAATGTGGGTGCTTGAAGGAAGCGAGGGTTTTGTTTGAGAAGAATGAGAGGAAGAATGTGGTTTCTTGGAATGCTTTTATAGGTGGTTATTCTAGAGAAGGGGATGTTAGCGGAGCGTTTGATCTTTTGCGGAAAATGCAGATGGAGGAGAAGGTGGATGTGGTCACGGTCTTAAATGTGTTACCGGCTTGTTTAACAGAGTCTGAACTTTTGAGGTTGAAGGAGCTTCATGGTTACTCATTCAGACATGGGTTTCAAGATGATGAACTGGTGGCCAACGCTTTTGTTGCAGCCTATGCGAAATGCGGGTCGCTGAGTTCTGCTGAGCAGGTGTTTTATGGTATAGAGACGAAGACAGTGAGTTCCTGGAATGCAGTTATGGGTGGCCTTGCCCAGAATGGAGATCCAAAAAAGGCTTTAGATTTGTACCTTCAAATGAAACAATCAGGTTTGGATACTGACAGTTTTAGCATTGGTAGCCTCCTTTTGGCTTGTTCCCACCTGAAGTTTCTTCAATATGGTAAAGAGATTCATGGTTTTGTGCTACGTAATGGGTTAGAGTTGGATTCATTTATTGGTATTTCATTACTATCTTTTTACATCCAATGTGGTAAACTGTCAACCGCAAGAGCATTATTTGATAGGATGGAACATCAAAGTTCAGTGTCATGGAATGCAATGATCTCTGGTTACTCTCAGATTGGACTTCCTGATGAAGCCCTGGATCTCTTTCGACAAATGCTGTCCAGTGGAATCCTACCCAGTGAAATAGCCACCATGAGTGTGCTGGGGGCATGTTCACAGCTGTCAGCTCTGCGTCTAGGGAAAGAACTGCATTGTTTTGCTTTGAAAGCAGGATTTACAGAAGACCTGTTTGTTGGTTGTTCTCTCATAGATATGTATGCTAAAAGTGGCTGCATAGAACAATCTCACAGGGCATTTGACAGTTTAACCAAGAAAGATGTGGCATCATGGAATGTCATAATTGCAGGGTATGGAATTCATGGACATGGAAACAAGGCCTTGGAGCTATTTGGAGAAATGATAAGGTTGGGTCAGAAGCCCGATAGTTTTACATTTCTTGGAATTCTAACTGCATGTAACCATGCTGGGCTTGTTAAAAATGGGATAAAATATTTTAACCAGATGCAAAGGTTATATGGAATCGAGCCGAAGTTAGAGCACTATGCATGTGTGGTAGACATGCTGGGTAGGGCTGGTCAATTAGAGGAAGCTCTGAACATCATAGATGACATGCCCGAGGAACCAGATACTAGAATTTGGAGCTCATTGCTTAGTTCCTGTAGGAATTATAATGATTTGGGAACGGGGCAGAAAATTGCTGAAAAGTTACTAGAATTGGAGCCCGAAAGGGCTGAGAATTATGTCCTACTGTCGAACTTATATGCTGCGACAGGGAACTGGGATGATGTGAGATGGGTCCGTCAAAGGATGAGGGAGATTGGCCTTCAGAAGGAAGCTGGCCGCAGTTGGATTGAACTTGGAGGGCAAGTGTATAGCTTTGTTGCTGGTGACAATTCCCTGCCAGAGTCAGGAGAGATTAGGAAGATGTGGACAAGATTAGAGGAAAGAATAAGTAAACTTGGATATACACCTAACACAGATTCTGTGCTTCATGAACTGGACTATGCGGAGAAGATTGAAATATTGAGGGGACATAGTGAAAAGCTTGCAATTTCATTTGGACTGTTAAAGATGAATAAAGGTGCTACAGTGAGAGTATGTAAAAATCTGCGCATATGCTTAGATTGTCACAATGCGGCTAAGTTGATATCTAAGGCTGTTGAAAGAGAGATTATTGTGAGAGACAACAAGCGCTTCCATCATTTCAAAGATGGTCTATGTTCTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

958

Amino Acids

106.17

Weight (kDa)

6.4

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	347 - 377	2.8e-06	PPR repeat family
PPR	PF01535	350 - 377	7.2e-06	PPR repeat
PPR_2	PF13041	448 - 495	1.4e-08	PPR repeat family
PPR	PF01535	451 - 480	4.9e-07	PPR repeat
PPR_2	PF13041	549 - 595	6.5e-09	PPR repeat family
PPR	PF01535	551 - 581	4.4e-10	PPR repeat
PPR_2	PF13041	649 - 696	3.8e-11	PPR repeat family
PPR	PF01535	653 - 681	2.4e-06	PPR repeat
E_motif	PF20431	767 - 829	1.6e-16	E motif
DYW_deaminase	PF14432	865 - 957	1.5e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2301
AarI	CACCTGC	1 cut(s)	1306
AatII	GACGTC	1 cut(s)	339
Acc16I	TGCGCA	1 cut(s)	2744
Acc36I	ACCTGC	1 cut(s)	1306
AccB1I	GGYRCC	2 cut(s)	13, 242
AccI	GTMKAC	1 cut(s)	2187
AccII	CGCG	2 cut(s)	516, 521
AclWI	GGATC	2 cut(s)	1385, 1719
AcoI	YGGCCR	4 cut(s)	262, 286, 1260, 2470
AcsI	RAATTY	6 cut(s)	680, 733, 748, 1986, 2073, 2265
AcuI	CTGAAG	3 cut(s)	504, 1511, 2441
AcyI	GRCGYC	3 cut(s)	234, 243, 336
AfaI	GTAC	3 cut(s)	368, 461, 1415
AfeI	AGCGCT	1 cut(s)	2825
AfiI	CCNNNNNNNGG	6 cut(s)	253, 573, 878, 1474, 2461, 2540
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	3 cut(s)	252, 1352, 1707
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
Alw21I	GWGCWC	2 cut(s)	2172, 2276
Alw26I	GTCTC	3 cut(s)	313, 1328, 2808
AlwI	GGATC	2 cut(s)	1385, 1719
AlwNI	CAGNNNCTG	2 cut(s)	1190, 2615
Ama87I	CYCGRG	1 cut(s)	2246
Aor51HI	AGCGCT	1 cut(s)	2825
ApeKI	GCWGC	3 cut(s)	1277, 1902, 2396
ApoI	RAATTY	6 cut(s)	680, 733, 748, 1986, 2073, 2265
ArsI	GACNNNNNNTTYG	2 cut(s)	1280, 1312
AseI	ATTAAT	1 cut(s)	942
AspLEI	GCGC	4 cut(s)	245, 518, 2745, 2826
AspS9I	GGNCC	1 cut(s)	2428
AvaI	CYCGRG	1 cut(s)	2246
AvaII	GGWCC	1 cut(s)	2428
BalI	TGGCCA	1 cut(s)	1262
BanI	GGYRCC	2 cut(s)	13, 242
BanII	GRGCYC	2 cut(s)	2276, 2355
BbsI	GAAGAC	2 cut(s)	1346, 1860
Bbv12I	GWGCWC	2 cut(s)	2172, 2276
BbvI	GCAGC	3 cut(s)	1289, 1889, 2383
BceAI	ACGGC	1 cut(s)	535
BciT130I	CCWGG	3 cut(s)	254, 1354, 1709
BciVI	GTATCC	1 cut(s)	1435
BcoDI	GTCTC	3 cut(s)	313, 1328, 2808
BfaI	CTAG	4 cut(s)	1080, 1808, 2262, 2342
BfmI	CTRYAG	2 cut(s)	2290, 2718
BfoI	RGCGCY	2 cut(s)	246, 2827
BfuAI	ACCTGC	1 cut(s)	1306
BfuI	GTATCC	1 cut(s)	1435
BglI	GCCNNNNNGGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	1311
Bme1390I	CCNGG	3 cut(s)	254, 1354, 1709
Bme18I	GGWCC	1 cut(s)	2428
BmeT110I	CYCGRG	1 cut(s)	2246
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	2428
BmiI	GGNNCC	5 cut(s)	15, 244, 2253, 2352, 2429
BmrFI	CCNGG	3 cut(s)	254, 1354, 1709
BmrI	ACTGGG	2 cut(s)	1743, 2419
BmsI	GCATC	6 cut(s)	363, 400, 678, 688, 1964, 2124
BmuI	ACTGGG	2 cut(s)	1743, 2419
BpiI	GAAGAC	2 cut(s)	1346, 1860
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu1102I	GCTNAGC	1 cut(s)	1311
BpuEI	CTTGAG	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	1535
BsaHI	GRCGYC	3 cut(s)	234, 243, 336
BsaJI	CCNNGG	4 cut(s)	519, 1707, 2010, 2247
Bsc4I	CCNNNNNNNGG	6 cut(s)	253, 573, 878, 1474, 2461, 2540
Bse118I	RCCGGY	2 cut(s)	284, 1171
Bse1I	ACTGG	7 cut(s)	15, 872, 1260, 1734, 1749, 2414, 2634
Bse3DI	GCAATG	2 cut(s)	1671, 2276
BseBI	CCWGG	3 cut(s)	254, 1354, 1709
BseDI	CCNNGG	4 cut(s)	519, 1707, 2010, 2247
BseLI	CCNNNNNNNGG	6 cut(s)	253, 573, 878, 1474, 2461, 2540
BseMI	GCAATG	2 cut(s)	1671, 2276
BseMII	CTCAG	5 cut(s)	717, 1292, 1302, 1697, 2355
BseNI	ACTGG	7 cut(s)	15, 872, 1260, 1734, 1749, 2414, 2634
BseRI	GAGGAG	4 cut(s)	182, 239, 842, 1148
BseX3I	CGGCCG	2 cut(s)	262, 286
BseXI	GCAGC	3 cut(s)	1289, 1889, 2383
BseYI	CCCAGC	4 cut(s)	219, 1774, 2096, 2194
Bsh1236I	CGCG	2 cut(s)	516, 521
Bsh1285I	CGRYCG	2 cut(s)	265, 289
BshNI	GGYRCC	2 cut(s)	13, 242
BsiEI	CGRYCG	2 cut(s)	265, 289
BsiHKAI	GWGCWC	2 cut(s)	2172, 2276
BsiHKCI	CYCGRG	1 cut(s)	2246
BsiSI	CCGG	4 cut(s)	165, 285, 842, 1172
BslFI	GGGAC	1 cut(s)	2676
BslI	CCNNNNNNNGG	6 cut(s)	253, 573, 878, 1474, 2461, 2540
BsmAI	GTCTC	3 cut(s)	313, 1328, 2808
BsmBI	CGTCTC	2 cut(s)	313, 1328
BsmFI	GGGAC	1 cut(s)	2676
BsmI	GAATGC	5 cut(s)	448, 661, 1063, 1363, 1666
BsoBI	CYCGRG	1 cut(s)	2246
Bsp1286I	GDGCHC	3 cut(s)	2172, 2276, 2355
Bsp143I	GATC	4 cut(s)	1108, 1390, 1668, 1711
Bsp1720I	GCTNAGC	1 cut(s)	1311
BspCNI	CTCAG	5 cut(s)	718, 1293, 1303, 1696, 2356
BspFNI	CGCG	2 cut(s)	516, 521
BspHI	TCATGA	1 cut(s)	2623
BspLI	GGNNCC	5 cut(s)	15, 244, 2253, 2352, 2429
BspMI	ACCTGC	1 cut(s)	1306
BspPI	GGATC	2 cut(s)	1385, 1719
BspT107I	GGYRCC	2 cut(s)	13, 242
BsrDI	GCAATG	2 cut(s)	1671, 2276
BsrFI	RCCGGY	2 cut(s)	284, 1171
BsrI	ACTGG	7 cut(s)	15, 872, 1260, 1734, 1749, 2414, 2634
BssAI	RCCGGY	2 cut(s)	284, 1171
BssECI	CCNNGG	4 cut(s)	519, 1707, 2010, 2247
BssMI	GATC	4 cut(s)	1108, 1390, 1668, 1711
BssNI	GRCGYC	3 cut(s)	234, 243, 336
BssT1I	CCWWGG	1 cut(s)	2010
Bst2UI	CCWGG	3 cut(s)	254, 1354, 1709
Bst4CI	ACNGT	9 cut(s)	865, 1156, 1345, 1451, 1605, 1934, 2382, 2697, 2722
Bst6I	CTCTTC	1 cut(s)	783
BstACI	GRCGYC	3 cut(s)	234, 243, 336
BstAPI	GCANNNNNTGC	1 cut(s)	1283
BstBAI	YACGTR	1 cut(s)	1535
BstC8I	GCNNGC	3 cut(s)	259, 2470, 2679
BstDSI	CCRYGG	1 cut(s)	519
BstENI	CCTNNNNNAGG	2 cut(s)	251, 2459
BstFNI	CGCG	2 cut(s)	516, 521
BstH2I	RGCGCY	2 cut(s)	246, 2827
BstHHI	GCGC	4 cut(s)	245, 518, 2745, 2826
BstKTI	GATC	4 cut(s)	1111, 1393, 1671, 1714
BstMAI	GTCTC	3 cut(s)	313, 1328, 2808
BstMBI	GATC	4 cut(s)	1108, 1390, 1668, 1711
BstMCI	CGRYCG	2 cut(s)	265, 289
BstNI	CCWGG	3 cut(s)	254, 1354, 1709
BstNSI	RCATGY	5 cut(s)	1785, 2088, 2181, 2194, 2245
BstSCI	CCNGG	3 cut(s)	252, 1352, 1707
BstSFI	CTRYAG	2 cut(s)	2290, 2718
BstSNI	TACGTA	1 cut(s)	1535
BstUI	CGCG	2 cut(s)	516, 521
BstV1I	GCAGC	3 cut(s)	1289, 1889, 2383
BstV2I	GAAGAC	2 cut(s)	1346, 1860
BstX2I	RGATCY	2 cut(s)	1390, 1711
BstYI	RGATCY	2 cut(s)	1390, 1711
BstZI	CGGCCG	2 cut(s)	262, 286
BsuI	GTATCC	1 cut(s)	1435
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	586
BtsIMutI	CAGTG	7 cut(s)	8, 443, 1350, 1656, 1741, 1756, 2727
BveI	ACCTGC	1 cut(s)	1306
Cac8I	GCNNGC	3 cut(s)	259, 2470, 2679
CaiI	CAGNNNCTG	2 cut(s)	1190, 2615
CciI	TCATGA	1 cut(s)	2623
CciNI	GCGGCCGC	1 cut(s)	262
CfoI	GCGC	4 cut(s)	245, 518, 2745, 2826
Cfr10I	RCCGGY	2 cut(s)	284, 1171
Cfr13I	GGNCC	1 cut(s)	2428
Cfr42I	CCGCGG	1 cut(s)	522
CseI	GACGC	2 cut(s)	242, 1793
Csp6I	GTAC	3 cut(s)	367, 460, 1414
CviQI	GTAC	3 cut(s)	367, 460, 1414
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	4 cut(s)	1110, 1392, 1670, 1713
DpnII	GATC	4 cut(s)	1108, 1390, 1668, 1711
DraI	TTTAAA	1 cut(s)	529
EaeI	YGGCCR	4 cut(s)	262, 286, 1260, 2470
EagI	CGGCCG	2 cut(s)	262, 286
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	2274
EclXI	CGGCCG	2 cut(s)	262, 286
Eco105I	TACGTA	1 cut(s)	1535
Eco130I	CCWWGG	1 cut(s)	2010
Eco147I	AGGCCT	3 cut(s)	257, 566, 2009
Eco24I	GRGCYC	2 cut(s)	2276, 2355
Eco32I	GATATC	1 cut(s)	2781
Eco47I	GGWCC	1 cut(s)	2428
Eco47III	AGCGCT	1 cut(s)	2825
Eco52I	CGGCCG	2 cut(s)	262, 286
Eco53kI	GAGCTC	1 cut(s)	2274
Eco57I	CTGAAG	3 cut(s)	504, 1511, 2441
Eco88I	CYCGRG	1 cut(s)	2246
EcoICRI	GAGCTC	1 cut(s)	2274
EcoNI	CCTNNNNNAGG	2 cut(s)	251, 2459
EcoRI	GAATTC	3 cut(s)	748, 1986, 2073
EcoRII	CCWGG	3 cut(s)	252, 1352, 1707
EcoRV	GATATC	1 cut(s)	2781
EcoT14I	CCWWGG	1 cut(s)	2010
EcoT22I	ATGCAT	1 cut(s)	2179
EcoT38I	GRGCYC	2 cut(s)	2276, 2355
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	2010
Esp3I	CGTCTC	2 cut(s)	313, 1328
FaqI	GGGAC	1 cut(s)	2676
FauI	CCCGC	2 cut(s)	404, 1286
FauNDI	CATATG	1 cut(s)	2747
FblI	GTMKAC	1 cut(s)	2187
FriOI	GRGCYC	2 cut(s)	2276, 2355
FspBI	CTAG	4 cut(s)	1080, 1808, 2262, 2342
FspI	TGCGCA	1 cut(s)	2744
GlaI	GCGC	4 cut(s)	244, 517, 2744, 2825
GsaI	CCCAGC	4 cut(s)	223, 1778, 2100, 2198
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	2 cut(s)	246, 2827
HapII	CCGG	4 cut(s)	165, 285, 842, 1172
HgaI	GACGC	2 cut(s)	242, 1793
HhaI	GCGC	4 cut(s)	245, 518, 2745, 2826
Hin1I	GRCGYC	3 cut(s)	234, 243, 336
Hin6I	GCGC	4 cut(s)	243, 516, 2743, 2824
HinP1I	GCGC	4 cut(s)	243, 516, 2743, 2824
HincII	GTYRAC	1 cut(s)	1608
HindII	GTYRAC	1 cut(s)	1608
HindIII	AAGCTT	2 cut(s)	90, 2675
HinfI	GANTC	9 cut(s)	392, 913, 1187, 1516, 1553, 1740, 2151, 2537, 2612
HpaII	CCGG	4 cut(s)	165, 285, 842, 1172
Hpy166II	GTNNAC	6 cut(s)	1601, 1608, 1787, 2188, 2562, 2588
Hpy188I	TCNGA	9 cut(s)	391, 640, 772, 1192, 1232, 1686, 2046, 2226, 2460
Hpy188III	TCNNGA	6 cut(s)	465, 1080, 1244, 1697, 2541, 2624
Hpy8I	GTNNAC	6 cut(s)	1601, 1608, 1787, 2188, 2562, 2588
Hpy99I	CGWCG	3 cut(s)	338, 341, 856
HpyCH4III	ACNGT	9 cut(s)	865, 1156, 1345, 1451, 1605, 1934, 2382, 2697, 2722
HpyCH4IV	ACGT	4 cut(s)	336, 585, 854, 1534
HpySE526I	ACGT	4 cut(s)	336, 585, 854, 1534
Hsp92I	GRCGYC	3 cut(s)	234, 243, 336
HspAI	GCGC	4 cut(s)	243, 516, 2743, 2824
KasI	GGCGCC	1 cut(s)	242
KspI	CCGCGG	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	1108, 1390, 1668, 1711
LmnI	GCTCC	5 cut(s)	1100, 1210, 2014, 2271, 2350
Lsp1109I	GCAGC	3 cut(s)	1289, 1889, 2383
LweI	GCATC	6 cut(s)	363, 400, 678, 688, 1964, 2124
MaeI	CTAG	4 cut(s)	1080, 1808, 2262, 2342
MaeII	ACGT	4 cut(s)	336, 585, 854, 1534
MalI	GATC	4 cut(s)	1110, 1392, 1670, 1713
MboI	GATC	4 cut(s)	1108, 1390, 1668, 1711
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	1390, 1711
MhlI	GDGCHC	3 cut(s)	2172, 2276, 2355
MlsI	TGGCCA	1 cut(s)	1262
MluNI	TGGCCA	1 cut(s)	1262
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	386, 1196, 2546
MmeI	TCCRAC	3 cut(s)	414, 1530, 2459
Mox20I	TGGCCA	1 cut(s)	1262
Mph1103I	ATGCAT	1 cut(s)	2179
MscI	TGGCCA	1 cut(s)	1262
MslI	CAYNNNNRTG	4 cut(s)	362, 1769, 1883, 1995
Msp20I	TGGCCA	1 cut(s)	1262
MspA1I	CMGCKG	2 cut(s)	521, 1792
MspI	CCGG	4 cut(s)	165, 285, 842, 1172
MspR9I	CCNGG	3 cut(s)	254, 1354, 1709
MssI	GTTTAAAC	1 cut(s)	529
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	5 cut(s)	448, 661, 1063, 1363, 1666
MvaI	CCWGG	3 cut(s)	254, 1354, 1709
MvnI	CGCG	2 cut(s)	516, 521
NarI	GGCGCC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	2747
NdeII	GATC	4 cut(s)	1108, 1390, 1668, 1711
NlaIV	GGNNCC	5 cut(s)	15, 244, 2253, 2352, 2429
NmuCI	GTSAC	4 cut(s)	859, 1150, 2519, 2759
NotI	GCGGCCGC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	2744
NsiI	ATGCAT	1 cut(s)	2179
NspI	RCATGY	5 cut(s)	1785, 2088, 2181, 2194, 2245
PagI	TCATGA	1 cut(s)	2623
PaqCI	CACCTGC	1 cut(s)	1306
PceI	AGGCCT	3 cut(s)	257, 566, 2009
PctI	GAATGC	5 cut(s)	448, 661, 1063, 1363, 1666
PfeI	GAWTC	6 cut(s)	913, 1516, 1553, 1740, 2151, 2612
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	1352
PleI	GAGTC	3 cut(s)	386, 1195, 2545
PluTI	GGCGCC	1 cut(s)	246
PmeI	GTTTAAAC	1 cut(s)	529
PpsI	GAGTC	3 cut(s)	386, 1195, 2545
Ppu21I	YACGTR	1 cut(s)	1535
PshBI	ATTAAT	1 cut(s)	942
PsiI	TTATAA	1 cut(s)	2301
Psp124BI	GAGCTC	1 cut(s)	2276
Psp6I	CCWGG	3 cut(s)	252, 1352, 1707
PspFI	CCCAGC	4 cut(s)	219, 1774, 2096, 2194
PspGI	CCWGG	3 cut(s)	252, 1352, 1707
PspN4I	GGNNCC	5 cut(s)	15, 244, 2253, 2352, 2429
PspPI	GGNCC	1 cut(s)	2428
PstNI	CAGNNNCTG	2 cut(s)	1190, 2615
PsuI	RGATCY	2 cut(s)	1390, 1711
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	1792
RsaI	GTAC	3 cut(s)	368, 461, 1415
RsaNI	GTAC	3 cut(s)	367, 460, 1414
RseI	CAYNNNNRTG	4 cut(s)	362, 1769, 1883, 1995
SacI	GAGCTC	1 cut(s)	2276
SacII	CCGCGG	1 cut(s)	522
Sau3AI	GATC	4 cut(s)	1108, 1390, 1668, 1711
Sau96I	GGNCC	1 cut(s)	2428
SchI	GAGTC	3 cut(s)	386, 1196, 2546
ScrFI	CCNGG	3 cut(s)	254, 1354, 1709
SduI	GDGCHC	3 cut(s)	2172, 2276, 2355
SfaNI	GCATC	6 cut(s)	363, 400, 678, 688, 1964, 2124
SfcI	CTRYAG	2 cut(s)	2290, 2718
SfoI	GGCGCC	1 cut(s)	244
Sfr303I	CCGCGG	1 cut(s)	522
SgrBI	CCGCGG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	2428
SmiMI	CAYNNNNRTG	4 cut(s)	362, 1769, 1883, 1995
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SnaBI	TACGTA	1 cut(s)	1535
SseBI	AGGCCT	3 cut(s)	257, 566, 2009
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	2 cut(s)	2123, 2655
SspMI	CTAG	4 cut(s)	1080, 1808, 2262, 2342
SstI	GAGCTC	1 cut(s)	2276
StuI	AGGCCT	3 cut(s)	257, 566, 2009
StyD4I	CCNGG	3 cut(s)	252, 1352, 1707
StyI	CCWWGG	1 cut(s)	2010
TaaI	ACNGT	9 cut(s)	865, 1156, 1345, 1451, 1605, 1934, 2382, 2697, 2722
TaiI	ACGT	4 cut(s)	339, 588, 857, 1537
TaqI	TCGA	5 cut(s)	408, 752, 1720, 2154, 2384
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	7 cut(s)	182, 264, 267, 291, 521, 2475, 2771
TfiI	GAWTC	6 cut(s)	913, 1516, 1553, 1740, 2151, 2612
TscAI	CASTG	7 cut(s)	15, 443, 1350, 1656, 1741, 1756, 2727
TseFI	GTSAC	4 cut(s)	859, 1150, 2519, 2759
TseI	GCWGC	3 cut(s)	1277, 1902, 2396
Tsp45I	GTSAC	4 cut(s)	859, 1150, 2519, 2759
TspGWI	ACGGA	1 cut(s)	2420
TspRI	CASTG	7 cut(s)	15, 443, 1350, 1656, 1741, 1756, 2727
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	2428
VspI	ATTAAT	1 cut(s)	942
XagI	CCTNNNNNAGG	2 cut(s)	251, 2459
XapI	RAATTY	6 cut(s)	680, 733, 748, 1986, 2073, 2265
XbaI	TCTAGA	1 cut(s)	1079
XceI	RCATGY	5 cut(s)	1785, 2088, 2181, 2194, 2245
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1771, 1948
XmiI	GTMKAC	1 cut(s)	2187
XspI	CTAG	4 cut(s)	1080, 1808, 2262, 2342
ZraI	GACGTC	1 cut(s)	337
Zsp2I	ATGCAT	1 cut(s)	2179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.