Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Reverse (-)

4813634 .. 4816135

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGTGCAACTCTCCTTCCGATTCCCGCCTCGTTTTCGAAGGGTTACAGAGAAAGAACCTGTTCCAGTGGAATGCTCTGGTTAGTGGGTACTCAAGAAACGAGCTTTATGAGGAAGCAATTGATACCTTCATTAAGTTGATAAGCGCCGCGGAGTTTAAACCCGATAATTTCACAATGCCTTGTGTGATTAAGGCCTGTGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATGGGGCTGGTTTCGGATGTGTTTGTGGGGAATGCATTGATTGCGGTGTATGGGAGATTTGGGATTGTTGGAGATTCAGTTAAGGTGTTTGAGAAAATGAGTGCGAGGAACTTGGTGTCTTGGAATTCGATGATTGGGGGGTTTTCGGAGAATGGGATGTGTGAAGAGAGTTGTAGGTTGTTGGTGAGGCTTTTGGAGGCTGAGGAAGGGTTTGTTCCGGATGAGGCGACGTTGGTGACTGTATTACCTGTTTGTGCTGGGAAAGGGGATGTTAGAATGGGGATGGAGATTCATGGTTTGGCGGTGAAGTTGGGGCTGGATAAGGAGTTGATGTTGAGTAATGCCTTGATGGACATGTATTTGAAATGTGGGTACTTAACGGAAGCTCGAGTTTTGTTTGAGAGAAATGAGAGTAAGAATGTGGTGTCTTGGAATGCTTTCATAGGAGGTTATTCTAGACAAGGGGATGTTAGTGGAGCATTTGATCTTTTGCAAAAAATGCAGATGAAGGAGAAGGTGAATGAGGTCACCCTCTTAAATGTGTTACCGGTTTTTTTAGAGGAGTCGGAACTTTTGAGCTTGAAAGAGCTTCATGGTTACTCATTCAGACATGGGTTTCAAGATGATGAGCTGGTAGCCAATGCTTTTGTTGCAGCCTATGCGAAATGTGGGTCACTGAGTTCTGCTGAGCAGGTGTTTTATGGTATCGAGACGAAGACAGTGAGCTCCTGGAATGCAGTTATTGGTGGCCATGCCCAGAATGGAGATCCAAAAAAGGCTTTAGATTTGTACCTTCAAATGAAACAATCAGGTTTGGATCCTGACAAGTTTAGCATTGGTAGCCTCCTTTTAGCTTGTGCCCACCTCAAATTTCTTCAATATGGTAAAGAGATTCATGGGTTTGTGCTACGTAATGGGTTAGAGTTGGATTCATTTATTGGTATTTCATTACTGTCCTTTTACATCCAATGTGGTAAACTATCGACGGCAAGAGCATTATTTGATAGGATGGAAGATAAAATTCCAGTGTCATGGAATGCAATAATCTCTGGTTACTCTCAGATTGGACTTCCTGATGAAGCCCTCGATCTCTTTCGACTAATGCTGTCTAATGGAATCCTACCTGGTGAAATAGCCACAATGAGTGCACTGGGGGCTTGTTCACAACTGTCAGCTCTGCGTCTAGGGAAAGAACTGCATTGTTTTGCTTTGAAAGCACGCCTTACACTAGACCTGTTTGTTGGTTGTTCTCTCATAGATATGTATGCAAAAAGTGGCTGCATAGAACAATCTCACAGGGCATTTGACAGTTTAACAAAGAAAGATGTGGCATCATGGAATGTTATAATTGCAGGGTATGGAATTCATGGACATGGAAACAAGGCTTTGGAGCTATTTGGAGAAATGATAAGTTTGGGGCATAAGCCTGATGTCTTTACATTTCTTGGAATTCTAACTGCATGTAACCATGCTGGGCTTGTTAAAAATGGGCTAAAATATTTCAAAGAGATGCAAAGTTTATATGGAATAGAGCCGAAGTTAGAGCATTATGCATGTGTAGTAGACATGCTGGGTAGGGCTGGTCAATTGGAGGAAGCTCTAAACCTGATAGATAACATGCCTGAAGAACCAGATACTAGAATTTGGAGTTCATTGCTTAGTTCCTGTAGGAATTATAATGATTTGGGAATGGGACAGAAAATTGCTGAAAAATTACTAGAATTGGAGCCCGGAAAGGCAGAGAATTATGTCCTACTGTCGAACTTATATGCTGCATCAGGGAATTGGGATGATGTGAGATGGGTCCGGCAAAGGATGAAGGAGATTGGCCTTCAGAAAGAAGCTGGCCGCAGTTGGATTGAAATTGGAGGGCAAGTGTATAACTTTGTTGCTGGTGACAATTCTCTGCCAGAGTCGGCGGAGATTAGGAAGATGTGGACAAAAGTAGAGGAAAGAATAAGTAAACTCGGATATACACCCAACACAGATTCTGTGCTTCATGAAGTGGACTATACAGAGAAGATTGAAATATTGAGGGGGCATAGTGAAAAGCTTGCAATTTCATTTGGATTGTTAAAGATGAAAAAAGGTGCTACACTGAGAGTCTGTAAAAATCTGCGCATCTGCATTGATTGTCACAATGCTGCTAAGTTGATATCGAAGGCTGTTGAAACGGAGATAATTGTGAGAGACAACAAGCGCTTCCATCATTTCAAAGATGGCCTCTGTTCTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

833

Amino Acids

92.32

Weight (kDa)

5.89

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	223 - 254	1.3e-06	PPR repeat family
PPR	PF01535	226 - 254	9.4e-06	PPR repeat
PPR_2	PF13041	324 - 372	2.1e-10	PPR repeat family
PPR	PF01535	327 - 356	2.3e-07	PPR repeat
PPR	PF01535	427 - 457	6.3e-09	PPR repeat
PPR_2	PF13041	427 - 461	2e-06	PPR repeat family
PPR_2	PF13041	525 - 572	3.9e-11	PPR repeat family
PPR	PF01535	529 - 557	2.2e-06	PPR repeat
E_motif	PF20431	643 - 705	1.1e-17	E motif
DYW_deaminase	PF14432	741 - 833	1.7e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1598, 1929
AarI	CACCTGC	1 cut(s)	934
Acc16I	TGCGCA	1 cut(s)	2372
Acc36I	ACCTGC	1 cut(s)	934
AccI	GTMKAC	1 cut(s)	1815
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	7 cut(s)	25, 147, 149, 296, 554, 2101, 2171
AclWI	GGATC	3 cut(s)	1013, 1064, 1077
AcoI	YGGCCR	2 cut(s)	1000, 2098
AcsI	RAATTY	6 cut(s)	376, 1121, 1272, 1614, 1701, 1893
AcuI	CTGAAG	2 cut(s)	1896, 2069
AfaI	GTAC	3 cut(s)	89, 626, 1043
AfeI	AGCGCT	1 cut(s)	2453
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	606
AgeI	ACCGGT	1 cut(s)	799
AjnI	CCWGG	2 cut(s)	980, 1375
Alw21I	GWGCWC	2 cut(s)	980, 1402
Alw26I	GTCTC	2 cut(s)	956, 2436
Alw44I	GTGCAC	1 cut(s)	1398
AlwI	GGATC	3 cut(s)	1013, 1064, 1077
AlwNI	CAGNNNCTG	1 cut(s)	2243
Ama87I	CYCGRG	1 cut(s)	639
Aor13HI	TCCGGA	1 cut(s)	469
Aor51HI	AGCGCT	1 cut(s)	2453
AoxI	GGCC	5 cut(s)	192, 1000, 2080, 2098, 2473
ApaLI	GTGCAC	1 cut(s)	1398
ApeKI	GCWGC	4 cut(s)	905, 1530, 2024, 2396
ApoI	RAATTY	6 cut(s)	376, 1121, 1272, 1614, 1701, 1893
ArsI	GACNNNNNNTTYG	2 cut(s)	908, 940
AsiGI	ACCGGT	1 cut(s)	799
Asp700I	GAANNNNTTC	2 cut(s)	59, 689
AspLEI	GCGC	3 cut(s)	146, 2373, 2454
AspS9I	GGNCC	1 cut(s)	2056
AsuC2I	CCSGG	1 cut(s)	1983
AsuHPI	GGTGA	7 cut(s)	448, 499, 568, 772, 781, 1391, 2159
AsuII	TTCGAA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	639
AvaII	GGWCC	1 cut(s)	2056
BaeGI	GKGCMC	2 cut(s)	1114, 1402
BalI	TGGCCA	1 cut(s)	1002
BamHI	GGATCC	1 cut(s)	1069
BanII	GRGCYC	2 cut(s)	980, 1983
BbsI	GAAGAC	1 cut(s)	974
Bbv12I	GWGCWC	2 cut(s)	980, 1402
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	917, 1517, 2011, 2383
BccI	CCATC	8 cut(s)	235, 247, 529, 595, 1255, 2046, 2465, 2466
BceAI	ACGGC	1 cut(s)	1254
BciT130I	CCWGG	2 cut(s)	982, 1377
BcnI	CCSGG	1 cut(s)	1983
BcoDI	GTCTC	2 cut(s)	956, 2436
BfaI	CTAG	5 cut(s)	708, 1436, 1481, 1890, 1970
BfmI	CTRYAG	1 cut(s)	1918
BfoI	RGCGCY	2 cut(s)	147, 2455
BfuAI	ACCTGC	1 cut(s)	934
BisI	GCNGC	6 cut(s)	147, 906, 1531, 2025, 2101, 2397
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	6 cut(s)	148, 907, 1532, 2026, 2102, 2398
Bme1390I	CCNGG	3 cut(s)	982, 1377, 1983
Bme18I	GGWCC	1 cut(s)	2056
BmeT110I	CYCGRG	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	2056
BmiI	GGNNCC	3 cut(s)	1071, 1980, 2057
BmrFI	CCNGG	3 cut(s)	982, 1377, 1983
BmrI	ACTGGG	1 cut(s)	1412
BmsI	GCATC	4 cut(s)	1592, 1752, 2036, 2382
BmuI	ACTGGG	1 cut(s)	1412
BpiI	GAAGAC	1 cut(s)	974
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	1983
BsaAI	YACGTR	1 cut(s)	1163
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	469, 799
BsaXI	ACNNNNNCTCC	6 cut(s)	315, 345, 569, 599, 2112, 2142
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	3 cut(s)	64, 1277, 1407
Bse3DI	GCAATG	1 cut(s)	1904
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	982, 1377
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	1904
BseMII	CTCAG	5 cut(s)	444, 920, 930, 1325, 2342
BseNI	ACTGG	3 cut(s)	64, 1277, 1407
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	2 cut(s)	1114, 1402
BseXI	GCAGC	4 cut(s)	917, 1517, 2011, 2383
BseYI	CCCAGC	3 cut(s)	509, 1724, 1822
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	5 cut(s)	194, 1002, 2082, 2100, 2475
BshTI	ACCGGT	1 cut(s)	799
BsiHKAI	GWGCWC	2 cut(s)	980, 1402
BsiHKCI	CYCGRG	1 cut(s)	639
BsiSI	CCGG	4 cut(s)	470, 800, 1983, 2059
BslFI	GGGAC	1 cut(s)	1959
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	2 cut(s)	956, 2436
BsmBI	CGTCTC	1 cut(s)	956
BsmFI	GGGAC	1 cut(s)	1959
BsmI	GAATGC	5 cut(s)	76, 289, 691, 991, 1294
BsnI	GGCC	5 cut(s)	194, 1002, 2082, 2100, 2475
BsoBI	CYCGRG	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	4 cut(s)	980, 1114, 1402, 1983
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	736, 1018, 1069, 1339
Bsp1720I	GCTNAGC	1 cut(s)	939
BspACI	CCGC	7 cut(s)	25, 147, 149, 296, 554, 2101, 2171
BspANI	GGCC	5 cut(s)	194, 1002, 2082, 2100, 2475
BspCNI	CTCAG	5 cut(s)	445, 921, 931, 1324, 2343
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	2251
BspLI	GGNNCC	3 cut(s)	1071, 1980, 2057
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	3 cut(s)	1013, 1064, 1077
BspT104I	TTCGAA	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	1904
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	3 cut(s)	64, 1277, 1407
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	4 cut(s)	736, 1018, 1069, 1339
Bst2UI	CCWGG	2 cut(s)	982, 1377
Bst4CI	ACNGT	6 cut(s)	493, 973, 1206, 1422, 1562, 2010
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	3 cut(s)	293, 751, 911
BstBAI	YACGTR	1 cut(s)	1163
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	1471, 2098, 2307
BstDEI	CTNAG	7 cut(s)	453, 929, 939, 1311, 1910, 2351, 2400
BstDSI	CCRYGG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	778
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	2 cut(s)	147, 2455
BstHHI	GCGC	3 cut(s)	146, 2373, 2454
BstKTI	GATC	4 cut(s)	739, 1021, 1072, 1342
BstMAI	GTCTC	2 cut(s)	956, 2436
BstMBI	GATC	4 cut(s)	736, 1018, 1069, 1339
BstMWI	GCNNNNNNNGC	7 cut(s)	293, 751, 902, 911, 1092, 1406, 1466
BstNI	CCWGG	2 cut(s)	982, 1377
BstNSI	RCATGY	5 cut(s)	610, 1716, 1809, 1822, 1873
BstPI	GGTNACC	1 cut(s)	778
BstSCI	CCNGG	3 cut(s)	980, 1375, 1981
BstSFI	CTRYAG	1 cut(s)	1918
BstSLI	GKGCMC	2 cut(s)	1114, 1402
BstSNI	TACGTA	1 cut(s)	1163
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	917, 1517, 2011, 2383
BstV2I	GAAGAC	1 cut(s)	974
BstX2I	RGATCY	2 cut(s)	1018, 1069
BstXI	CCANNNNNNTGG	1 cut(s)	1284
BstYI	RGATCY	2 cut(s)	1018, 1069
BsuRI	GGCC	5 cut(s)	194, 1002, 2082, 2100, 2475
BtgI	CCRYGG	1 cut(s)	147
BtsIMutI	CAGTG	6 cut(s)	71, 926, 978, 1284, 1400, 2348
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	3 cut(s)	1471, 2098, 2307
CaiI	CAGNNNCTG	1 cut(s)	2243
CciI	TCATGA	1 cut(s)	2251
CfoI	GCGC	3 cut(s)	146, 2373, 2454
Cfr10I	RCCGGY	1 cut(s)	799
Cfr13I	GGNCC	1 cut(s)	2056
Cfr42I	CCGCGG	1 cut(s)	150
CseI	GACGC	1 cut(s)	1421
CsiI	ACCWGGT	1 cut(s)	1375
Csp6I	GTAC	3 cut(s)	88, 625, 1042
CspAI	ACCGGT	1 cut(s)	799
CviQI	GTAC	3 cut(s)	88, 625, 1042
DdeI	CTNAG	7 cut(s)	453, 929, 939, 1311, 1910, 2351, 2400
DpnI	GATC	4 cut(s)	738, 1020, 1071, 1341
DpnII	GATC	4 cut(s)	736, 1018, 1069, 1339
DraI	TTTAAA	1 cut(s)	157
EaeI	YGGCCR	2 cut(s)	1000, 2098
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	2186
Ecl136II	GAGCTC	1 cut(s)	978
Eco105I	TACGTA	1 cut(s)	1163
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	2 cut(s)	980, 1983
Eco32I	GATATC	1 cut(s)	2409
Eco47I	GGWCC	1 cut(s)	2056
Eco47III	AGCGCT	1 cut(s)	2453
Eco53kI	GAGCTC	1 cut(s)	978
Eco57I	CTGAAG	2 cut(s)	1896, 2069
Eco88I	CYCGRG	1 cut(s)	639
Eco91I	GGTNACC	1 cut(s)	778
EcoICRI	GAGCTC	1 cut(s)	978
EcoO65I	GGTNACC	1 cut(s)	778
EcoRI	GAATTC	3 cut(s)	376, 1614, 1701
EcoRII	CCWGG	2 cut(s)	980, 1375
EcoRV	GATATC	1 cut(s)	2409
EcoT22I	ATGCAT	2 cut(s)	289, 1807
EcoT38I	GRGCYC	2 cut(s)	980, 1983
Esp3I	CGTCTC	1 cut(s)	956
FalI	AAGNNNNNCTT	2 cut(s)	1458, 1490
FaqI	GGGAC	1 cut(s)	1959
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	1815
Fnu4HI	GCNGC	6 cut(s)	147, 906, 1531, 2025, 2101, 2397
FriOI	GRGCYC	2 cut(s)	980, 1983
Fsp4HI	GCNGC	6 cut(s)	147, 906, 1531, 2025, 2101, 2397
FspBI	CTAG	5 cut(s)	708, 1436, 1481, 1890, 1970
FspI	TGCGCA	1 cut(s)	2372
GlaI	GCGC	3 cut(s)	145, 2372, 2453
GluI	GCNGC	6 cut(s)	147, 906, 1531, 2025, 2101, 2397
GsaI	CCCAGC	3 cut(s)	513, 1728, 1826
HaeII	RGCGCY	2 cut(s)	147, 2455
HaeIII	GGCC	5 cut(s)	194, 1002, 2082, 2100, 2475
HapII	CCGG	4 cut(s)	470, 800, 1983, 2059
HgaI	GACGC	1 cut(s)	1421
HhaI	GCGC	3 cut(s)	146, 2373, 2454
Hin6I	GCGC	3 cut(s)	144, 2371, 2452
HinP1I	GCGC	3 cut(s)	144, 2371, 2452
HindIII	AAGCTT	1 cut(s)	2303
HpaII	CCGG	4 cut(s)	470, 800, 1983, 2059
HphI	GGTGA	7 cut(s)	448, 499, 568, 772, 781, 1391, 2159
Hpy166II	GTNNAC	7 cut(s)	1229, 1400, 1415, 1816, 2190, 2216, 2260
Hpy188I	TCNGA	8 cut(s)	19, 268, 400, 820, 860, 1314, 2088, 2222
Hpy188III	TCNNGA	8 cut(s)	93, 470, 708, 872, 961, 1073, 1325, 2252
Hpy8I	GTNNAC	7 cut(s)	1229, 1400, 1415, 1816, 2190, 2216, 2260
Hpy99I	CGWCG	2 cut(s)	484, 1240
HpyCH4III	ACNGT	6 cut(s)	493, 973, 1206, 1422, 1562, 2010
HpyCH4IV	ACGT	2 cut(s)	482, 1162
HpyF10VI	GCNNNNNNNGC	7 cut(s)	293, 751, 902, 911, 1092, 1406, 1466
HpyF3I	CTNAG	7 cut(s)	453, 929, 939, 1311, 1910, 2351, 2400
HpySE526I	ACGT	2 cut(s)	482, 1162
HspAI	GCGC	3 cut(s)	144, 2371, 2452
Kpn2I	TCCGGA	1 cut(s)	469
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	736, 1018, 1069, 1339
LmnI	GCTCC	4 cut(s)	728, 983, 1642, 1978
Lsp1109I	GCAGC	4 cut(s)	917, 1517, 2011, 2383
LweI	GCATC	4 cut(s)	1592, 1752, 2036, 2382
MabI	ACCWGGT	1 cut(s)	1375
MaeI	CTAG	5 cut(s)	708, 1436, 1481, 1890, 1970
MaeII	ACGT	2 cut(s)	482, 1162
MalI	GATC	4 cut(s)	738, 1020, 1071, 1341
MboI	GATC	4 cut(s)	736, 1018, 1069, 1339
MboII	GAAGA	8 cut(s)	262, 428, 979, 1118, 1277, 1889, 2194, 2284
MfeI	CAATTG	2 cut(s)	117, 1838
MflI	RGATCY	2 cut(s)	1018, 1069
MhlI	GDGCHC	4 cut(s)	980, 1114, 1402, 1983
MlsI	TGGCCA	1 cut(s)	1002
MluNI	TGGCCA	1 cut(s)	1002
MlyI	GAGTC	3 cut(s)	824, 2174, 2364
MmeI	TCCRAC	4 cut(s)	301, 798, 1158, 2087
Mox20I	TGGCCA	1 cut(s)	1002
Mph1103I	ATGCAT	2 cut(s)	289, 1807
MroI	TCCGGA	1 cut(s)	469
MroXI	GAANNNNTTC	2 cut(s)	59, 689
MscI	TGGCCA	1 cut(s)	1002
MseI	TTAA	9 cut(s)	132, 156, 189, 333, 629, 788, 1565, 1734, 2327
MslI	CAYNNNNRTG	2 cut(s)	1511, 1623
Msp20I	TGGCCA	1 cut(s)	1002
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	4 cut(s)	470, 800, 1983, 2059
MspR9I	CCNGG	3 cut(s)	982, 1377, 1983
MssI	GTTTAAAC	1 cut(s)	157
MunI	CAATTG	2 cut(s)	117, 1838
Mva1269I	GAATGC	5 cut(s)	76, 289, 691, 991, 1294
MvaI	CCWGG	2 cut(s)	982, 1377
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	7 cut(s)	293, 751, 902, 911, 1092, 1406, 1466
NciI	CCSGG	1 cut(s)	1983
NdeII	GATC	4 cut(s)	736, 1018, 1069, 1339
NlaIV	GGNNCC	3 cut(s)	1071, 1980, 2057
NmuCI	GTSAC	5 cut(s)	487, 778, 924, 2147, 2387
NsbI	TGCGCA	1 cut(s)	2372
NsiI	ATGCAT	2 cut(s)	289, 1807
NspI	RCATGY	5 cut(s)	610, 1716, 1809, 1822, 1873
NspV	TTCGAA	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	639
PagI	TCATGA	1 cut(s)	2251
PaqCI	CACCTGC	1 cut(s)	934
PceI	AGGCCT	1 cut(s)	194
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	5 cut(s)	76, 289, 691, 991, 1294
PdmI	GAANNNNTTC	2 cut(s)	59, 689
PfeI	GAWTC	7 cut(s)	20, 326, 541, 1144, 1181, 1368, 2240
PfoI	TCCNGGA	1 cut(s)	980
PinAI	ACCGGT	1 cut(s)	799
PkrI	GCNGC	6 cut(s)	148, 907, 1532, 2026, 2102, 2398
PleI	GAGTC	3 cut(s)	823, 2173, 2363
PmeI	GTTTAAAC	1 cut(s)	157
PpsI	GAGTC	3 cut(s)	823, 2173, 2363
Ppu21I	YACGTR	1 cut(s)	1163
PscI	ACATGT	1 cut(s)	606
PsiI	TTATAA	2 cut(s)	1598, 1929
Psp124BI	GAGCTC	1 cut(s)	980
Psp6I	CCWGG	2 cut(s)	980, 1375
PspEI	GGTNACC	1 cut(s)	778
PspFI	CCCAGC	3 cut(s)	509, 1724, 1822
PspGI	CCWGG	2 cut(s)	980, 1375
PspN4I	GGNNCC	3 cut(s)	1071, 1980, 2057
PspPI	GGNCC	1 cut(s)	2056
PspXI	VCTCGAGB	1 cut(s)	639
PstNI	CAGNNNCTG	1 cut(s)	2243
PsuI	RGATCY	2 cut(s)	1018, 1069
RsaI	GTAC	3 cut(s)	89, 626, 1043
RsaNI	GTAC	3 cut(s)	88, 625, 1042
RseI	CAYNNNNRTG	2 cut(s)	1511, 1623
SacI	GAGCTC	1 cut(s)	980
SacII	CCGCGG	1 cut(s)	150
SaqAI	TTAA	9 cut(s)	132, 156, 189, 333, 629, 788, 1565, 1734, 2327
SatI	GCNGC	6 cut(s)	147, 906, 1531, 2025, 2101, 2397
Sau3AI	GATC	4 cut(s)	736, 1018, 1069, 1339
Sau96I	GGNCC	1 cut(s)	2056
SchI	GAGTC	3 cut(s)	824, 2174, 2364
ScrFI	CCNGG	3 cut(s)	982, 1377, 1983
SduI	GDGCHC	4 cut(s)	980, 1114, 1402, 1983
SexAI	ACCWGGT	1 cut(s)	1375
SfaNI	GCATC	4 cut(s)	1592, 1752, 2036, 2382
SfcI	CTRYAG	1 cut(s)	1918
Sfr274I	CTCGAG	1 cut(s)	639
Sfr303I	CCGCGG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	2056
SlaI	CTCGAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	2 cut(s)	1511, 1623
SmlI	CTYRAG	2 cut(s)	91, 639
SmoI	CTYRAG	2 cut(s)	91, 639
SnaBI	TACGTA	1 cut(s)	1163
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	7 cut(s)	25, 147, 149, 296, 554, 2101, 2171
SspI	AATATT	2 cut(s)	1751, 2283
SspMI	CTAG	5 cut(s)	708, 1436, 1481, 1890, 1970
SstI	GAGCTC	1 cut(s)	980
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	3 cut(s)	980, 1375, 1981
TaaI	ACNGT	6 cut(s)	493, 973, 1206, 1422, 1562, 2010
TaiI	ACGT	2 cut(s)	485, 1165
TaqI	TCGA	9 cut(s)	36, 380, 640, 960, 1235, 1338, 1348, 2012, 2411
TauI	GCSGC	2 cut(s)	149, 2103
TfiI	GAWTC	7 cut(s)	20, 326, 541, 1144, 1181, 1368, 2240
Tru1I	TTAA	9 cut(s)	132, 156, 189, 333, 629, 788, 1565, 1734, 2327
Tru9I	TTAA	9 cut(s)	132, 156, 189, 333, 629, 788, 1565, 1734, 2327
TscAI	CASTG	6 cut(s)	71, 933, 978, 1284, 1407, 2355
TseFI	GTSAC	5 cut(s)	487, 778, 924, 2147, 2387
TseI	GCWGC	4 cut(s)	905, 1530, 2024, 2396
Tsp45I	GTSAC	5 cut(s)	487, 778, 924, 2147, 2387
TspGWI	ACGGA	2 cut(s)	647, 2441
TspRI	CASTG	6 cut(s)	71, 933, 978, 1284, 1407, 2355
VneI	GTGCAC	1 cut(s)	1398
VpaK11BI	GGWCC	1 cut(s)	2056
XapI	RAATTY	6 cut(s)	376, 1121, 1272, 1614, 1701, 1893
XbaI	TCTAGA	1 cut(s)	707
XceI	RCATGY	5 cut(s)	610, 1716, 1809, 1822, 1873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XhoI	CTCGAG	1 cut(s)	639
XmiI	GTMKAC	1 cut(s)	1815
XmnI	GAANNNNTTC	2 cut(s)	59, 689
XspI	CTAG	5 cut(s)	708, 1436, 1481, 1890, 1970
Zsp2I	ATGCAT	2 cut(s)	289, 1807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.