Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Reverse (-)

4343957 .. 4346821

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2865 bp

ATGGCCTCTGTGGCACCACCACCACTCCCATTCTCATATCATCACCATCCCCTGCTTCCCAAACACTCCATTTTCACACCAAAATCTTCACTTTCTTTCTCTCCCGCTCAAACCAAAACCAACTCACTCCAAGACCTCAACCACCTCTGCAACTCCGGCAACCTCTCCGCCGCCCTCACCCTCCTCCAAACCAATGCCTTCCCCACCTCACAGCACCTCAAAGACGCCATCGGCGCCCTCCTCCAGGCCTGTGGCCGCCACAAGGACATCGAAACCGGCCGCAAGCTCCACCACCTCGTCTCCCAATCCACCCACTTCACCCACGACTTTGTCCTCAACACCCGCATCATCACCATGTACTCAATGTGCAACTCTCCTTCCGATTCCCGCCTCGTTTTCGAAGGGTTACAGAGAAAGAACCTGTTCCAGTGGAATGCTCTGGTTAGTGGGTACTCAAGAAACGAGCTTTATGAGGAAGCAATTGATACCTTCATTAAGTTGATAAGCGCCGCGGAGTTTAAACCCGATAATTTCACAATGCCTTGTGTGATTAAGGCCTGTGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATGGGGCTGGTTTCGGATGTGTTTGTGGGGAATGCATTGATTGCGGTGTATGGGAGATTTGGGATTGTTGGAGATTCAGTTAAGGTGTTTGAGAAAATGAGTGCGAGGAATTTGGTGTCTTGGAATTCGATGATTGGGGCGTTTTCGGAGAATGGGATGTGTGAAGAGAGTTGTACGTTGTTGGTGAGGTTTTTGGAGGGTGAGGAAGGGTTTGTTCCGGATGAGGCGACGTTGTTGACTGTATTACCTGTTTGTGCTGGGAAAGGGGATGTTAGAATGGGGGTGGAGATTCATGGTTTGGCGGTGAAGTTGGGGCTGGATAAGGAGTTGATGTTGAGTAATGCCTTGATGGACATGTATTTGAAATGTGGGTACTTAACGGAAGCTCGAGTTTTGTTTGAGAGAAATGAGAGGAAGAATGTGGTGTCTTGGAATGCTTTCATAGGAGGTTATTCTAGACAAGGGGATGTTAGTGGAGCATTTGATCTTTTGCGAAAAATGCAGATGAAGGAGAAGGTGAATGAGGTCACCGTCTTAAATGTGTTACCGGTTTTTTTAGAGGAGTCGGAACTTTTGAGCTTGAAAGAGCTTCATGGTTACTCAATCAGACATGGGTTTCAAGATGATGAGCTGGTAGCCAATGCTTTTGTTGCAGCCTATGCGAAATGTGGGTCGTTGAGATATGCTGAGCAGGTGTTTTATGGTATTGAGACGAAGAAAGTGAGCTTCTGGAATGCAGTTATTGGTGGCCATGCCCAGAATGGAGATCCAAAAAAGGCTTTAGATTTGTACCTTCAAATGAAACAATCAGGTTTGGATCCTGACAAGTTTAGCATTGGTAGCCTCCTTTTAGCTTGTGCCCACCTCAAATTTCTTCAGTATGGTAAAGAGATTCATGGGTTTGTGCTACGTAATGGATTAGAGTTGGATTCATTTATTGGTATTTCATTACTATCCTTTTACATCCAATGTGGTAAACTATCGACGGCAAGAGAATTATTTGATAGGATGGAAGATAAAATTCCAGTGTCATGGAATGCAATAATCTCTGGGTACTCTCAGATTGGACTTCCTGATGAAGCCCTCGATCTCTTTCGACTAATGCTGTCTAATGGAATCCTACCTGGTGAAATAGCCACAATGAGTGCACTGGGGGCTTGTTCACAACTGTCAGCTCTGCGTCTAGGGAAAGAACTGCATTGTTTTGCTTTGAAAGCACGCCTTACACTAGACCTGTTTGTTGGTTGTTCTCTCATAGATATGTATGCAAAAAGTGGCTGCATAGAACAATCTCACAGGGCATTTGACAGTTTAACAAAGAAAGATGTGGCATCATGGAATGTTATAATTGCAGGGTATGGAATTCATGGACATGGAAACAAGGCTTTGGAGCTATTTGGAGAAATGATAAGTTTGGGGCATAAGCCTGATGTCTTTACATTTCTTGGAATTCTAACTGCATGTAACCATGCTGGGCTGGTTAAAAATGGGCTAAAATATTTCAAAGAGATGCAAAGATTATATGGAATAGAGCCGAAGTTAGAGCATTATGCATGTGTAGTAGACATGCTGGGTAGGGCTGGTCAATTGGAGGAAGCTTTAAACCTGATAGATAACATGCCTGAAGAACCAGATACTAGAATTTGGAGTTCATTGCTTAGTTCCTGTAGGAATTATAATGATTTGGGAATAGGACAGAAAATTGCTGAAAAACTACTAGAATTGGAGCCCGGAAAGGCAGAGAATTATGTCCTACTGTCGAACTTATATGCTGCATCAGGGAATTGGGATGATGTGAGATGGGTCCGGCAAAGGATGAAGGAGATTGGCCTTCAGAAAGAAGCTGGCCGCAGTTGGATTGAAATTGGAGGGCAAGTGTATAACTTTGTTGCTGGTGACAATTCTCTGCCAGAGTCGGCGGAGATTAGGAAGATGTGGACAAAAGTAGAGGAAAGAATAAGTAAACTCGGATATACACCCAACACAGATTCTGTGCTTCATGAAGTGGACTATACAGAGAAGATTGAAATATTGAGGGGGCATAGTGAAAAGCTTGCAATTTCATTTGGATTGTTAAAGATGAAAAAAGGTGCTACACTGAGAGTCTGTAAAAATCTGCGCATCTGCATTGATTGTCACAATGCTGCTAAGTTGATATCAAAGGCTGTTGAAACGGAGATAATTGTGAGAGACAACAAGCGCTTCCATCATTTCAAAGATGGCCTCTGTTCTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

954

Amino Acids

106.0

Weight (kDa)

6.6

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	344 - 375	1.6e-06	PPR repeat family
PPR	PF01535	347 - 375	9.5e-06	PPR repeat
PPR_2	PF13041	446 - 493	1.1e-09	PPR repeat family
PPR	PF01535	449 - 477	1.3e-06	PPR repeat
PPR	PF01535	548 - 578	7.4e-09	PPR repeat
PPR_2	PF13041	548 - 582	2.3e-06	PPR repeat family
PPR_2	PF13041	646 - 693	4.6e-11	PPR repeat family
PPR	PF01535	650 - 678	2.5e-06	PPR repeat
E_motif	PF20431	764 - 826	8.1e-18	E motif
DYW_deaminase	PF14432	862 - 954	2e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1961, 2292
AarI	CACCTGC	1 cut(s)	1297
Acc16I	TGCGCA	1 cut(s)	2735
Acc36I	ACCTGC	1 cut(s)	1297
AccB1I	GGYRCC	2 cut(s)	13, 233
AccBSI	CCGCTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	2178
AccII	CGCG	1 cut(s)	512
AccIII	TCCGGA	1 cut(s)	832
AclWI	GGATC	3 cut(s)	1376, 1427, 1440
AcoI	YGGCCR	4 cut(s)	253, 277, 1363, 2461
AcsI	RAATTY	7 cut(s)	724, 739, 1484, 1635, 1977, 2064, 2256
AcuI	CTGAAG	3 cut(s)	1475, 2259, 2432
AcyI	GRCGYC	2 cut(s)	225, 234
AfaI	GTAC	6 cut(s)	359, 452, 790, 989, 1406, 1670
AfeI	AGCGCT	1 cut(s)	2816
AfiI	CCNNNNNNNGG	3 cut(s)	244, 262, 564
AflIII	ACRYGT	1 cut(s)	969
AgeI	ACCGGT	1 cut(s)	1162
AjnI	CCWGG	2 cut(s)	243, 1738
Alw21I	GWGCWC	1 cut(s)	1765
Alw26I	GTCTC	3 cut(s)	304, 1319, 2799
Alw44I	GTGCAC	1 cut(s)	1761
AlwI	GGATC	3 cut(s)	1376, 1427, 1440
AlwNI	CAGNNNCTG	1 cut(s)	2606
Ama87I	CYCGRG	1 cut(s)	1002
Aor13HI	TCCGGA	1 cut(s)	832
Aor51HI	AGCGCT	1 cut(s)	2816
AoxI	GGCC	9 cut(s)	3, 246, 253, 277, 555, 1363, 2443, 2461, 2836
ApaLI	GTGCAC	1 cut(s)	1761
ApeKI	GCWGC	4 cut(s)	1268, 1893, 2387, 2759
ApoI	RAATTY	7 cut(s)	724, 739, 1484, 1635, 1977, 2064, 2256
ArsI	GACNNNNNNTTYG	2 cut(s)	1271, 1303
AsiGI	ACCGGT	1 cut(s)	1162
Asp700I	GAANNNNTTC	2 cut(s)	422, 1052
AspLEI	GCGC	4 cut(s)	236, 509, 2736, 2817
AspS9I	GGNCC	1 cut(s)	2419
AsuC2I	CCSGG	1 cut(s)	2346
AsuII	TTCGAA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	2419
BaeGI	GKGCMC	2 cut(s)	1477, 1765
BalI	TGGCCA	1 cut(s)	1365
BamHI	GGATCC	1 cut(s)	1432
BanI	GGYRCC	2 cut(s)	13, 233
BanII	GRGCYC	1 cut(s)	2346
Bbv12I	GWGCWC	1 cut(s)	1765
BbvI	GCAGC	4 cut(s)	1280, 1880, 2374, 2746
BccI	CCATC	9 cut(s)	54, 236, 598, 610, 958, 1618, 2409, 2828, 2829
BceAI	ACGGC	1 cut(s)	1617
BciT130I	CCWGG	2 cut(s)	245, 1740
BcnI	CCSGG	1 cut(s)	2346
BcoDI	GTCTC	3 cut(s)	304, 1319, 2799
BfaI	CTAG	5 cut(s)	1071, 1799, 1844, 2253, 2333
BfmI	CTRYAG	1 cut(s)	2281
BfoI	RGCGCY	3 cut(s)	237, 510, 2818
BfuAI	ACCTGC	1 cut(s)	1297
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	9 cut(s)	171, 256, 280, 510, 1269, 1894, 2388, 2464, 2760
BlpI	GCTNAGC	1 cut(s)	1302
BlsI	GCNGC	9 cut(s)	172, 257, 281, 511, 1270, 1895, 2389, 2465, 2761
Bme1390I	CCNGG	3 cut(s)	245, 1740, 2346
Bme18I	GGWCC	1 cut(s)	2419
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	2419
BmiI	GGNNCC	5 cut(s)	15, 235, 1434, 2343, 2420
BmrFI	CCNGG	3 cut(s)	245, 1740, 2346
BmrI	ACTGGG	1 cut(s)	1775
BmsI	GCATC	5 cut(s)	354, 1955, 2115, 2399, 2745
BmuI	ACTGGG	1 cut(s)	1775
BpmI	CTGGAG	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	1302
Bpu14I	TTCGAA	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	2346
BsaAI	YACGTR	1 cut(s)	1526
BsaHI	GRCGYC	2 cut(s)	225, 234
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	2 cut(s)	832, 1162
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 262, 564
Bse118I	RCCGGY	2 cut(s)	275, 1162
Bse1I	ACTGG	3 cut(s)	427, 1640, 1770
Bse3DI	GCAATG	1 cut(s)	2267
BseAI	TCCGGA	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	245, 1740
BseDI	CCNNGG	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	244, 262, 564
BseMI	GCAATG	1 cut(s)	2267
BseMII	CTCAG	3 cut(s)	1293, 1688, 2705
BseNI	ACTGG	3 cut(s)	427, 1640, 1770
BseRI	GAGGAG	3 cut(s)	173, 230, 1190
BseSI	GKGCMC	2 cut(s)	1477, 1765
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	4 cut(s)	1280, 1880, 2374, 2746
BseYI	CCCAGC	3 cut(s)	872, 2087, 2185
Bsh1236I	CGCG	1 cut(s)	512
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	9 cut(s)	5, 248, 255, 279, 557, 1365, 2445, 2463, 2838
BshNI	GGYRCC	2 cut(s)	13, 233
BshTI	ACCGGT	1 cut(s)	1162
BsiEI	CGRYCG	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	1765
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	6 cut(s)	156, 276, 833, 1163, 2346, 2422
BslI	CCNNNNNNNGG	3 cut(s)	244, 262, 564
BsmAI	GTCTC	3 cut(s)	304, 1319, 2799
BsmBI	CGTCTC	2 cut(s)	304, 1319
BsmI	GAATGC	5 cut(s)	439, 652, 1054, 1354, 1657
BsnI	GGCC	9 cut(s)	5, 248, 255, 279, 557, 1365, 2445, 2463, 2838
BsoBI	CYCGRG	1 cut(s)	1002
Bsp119I	TTCGAA	1 cut(s)	399
Bsp1286I	GDGCHC	3 cut(s)	1477, 1765, 2346
Bsp13I	TCCGGA	1 cut(s)	832
Bsp143I	GATC	4 cut(s)	1099, 1381, 1432, 1702
Bsp1720I	GCTNAGC	1 cut(s)	1302
BspANI	GGCC	9 cut(s)	5, 248, 255, 279, 557, 1365, 2445, 2463, 2838
BspCNI	CTCAG	3 cut(s)	1294, 1687, 2706
BspEI	TCCGGA	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	2614
BspLI	GGNNCC	5 cut(s)	15, 235, 1434, 2343, 2420
BspMI	ACCTGC	1 cut(s)	1297
BspPI	GGATC	3 cut(s)	1376, 1427, 1440
BspT104I	TTCGAA	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	13, 233
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	2267
BsrFI	RCCGGY	2 cut(s)	275, 1162
BsrI	ACTGG	3 cut(s)	427, 1640, 1770
BssAI	RCCGGY	2 cut(s)	275, 1162
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	4 cut(s)	1099, 1381, 1432, 1702
BssNI	GRCGYC	2 cut(s)	225, 234
Bst2UI	CCWGG	2 cut(s)	245, 1740
Bst4CI	ACNGT	5 cut(s)	856, 1147, 1785, 1925, 2373
Bst6I	CTCTTC	1 cut(s)	774
BstACI	GRCGYC	2 cut(s)	225, 234
BstAPI	GCANNNNNTGC	2 cut(s)	656, 1274
BstBAI	YACGTR	1 cut(s)	1526
BstBI	TTCGAA	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	284, 1834, 2461, 2670
BstDEI	CTNAG	5 cut(s)	1302, 1674, 2273, 2714, 2763
BstDSI	CCRYGG	1 cut(s)	510
BstEII	GGTNACC	1 cut(s)	1141
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	512
BstH2I	RGCGCY	3 cut(s)	237, 510, 2818
BstHHI	GCGC	4 cut(s)	236, 509, 2736, 2817
BstKTI	GATC	4 cut(s)	1102, 1384, 1435, 1705
BstMAI	GTCTC	3 cut(s)	304, 1319, 2799
BstMBI	GATC	4 cut(s)	1099, 1381, 1432, 1702
BstMCI	CGRYCG	1 cut(s)	280
BstNI	CCWGG	2 cut(s)	245, 1740
BstNSI	RCATGY	5 cut(s)	973, 2079, 2172, 2185, 2236
BstPI	GGTNACC	1 cut(s)	1141
BstSCI	CCNGG	3 cut(s)	243, 1738, 2344
BstSFI	CTRYAG	1 cut(s)	2281
BstSLI	GKGCMC	2 cut(s)	1477, 1765
BstSNI	TACGTA	1 cut(s)	1526
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	4 cut(s)	1280, 1880, 2374, 2746
BstX2I	RGATCY	2 cut(s)	1381, 1432
BstXI	CCANNNNNNTGG	2 cut(s)	251, 1647
BstYI	RGATCY	2 cut(s)	1381, 1432
BstZI	CGGCCG	1 cut(s)	277
BsuRI	GGCC	9 cut(s)	5, 248, 255, 279, 557, 1365, 2445, 2463, 2838
BtgI	CCRYGG	1 cut(s)	510
BtsIMutI	CAGTG	4 cut(s)	434, 1647, 1763, 2711
BveI	ACCTGC	1 cut(s)	1297
Cac8I	GCNNGC	4 cut(s)	284, 1834, 2461, 2670
CaiI	CAGNNNCTG	1 cut(s)	2606
CciI	TCATGA	1 cut(s)	2614
CfoI	GCGC	4 cut(s)	236, 509, 2736, 2817
Cfr10I	RCCGGY	2 cut(s)	275, 1162
Cfr13I	GGNCC	1 cut(s)	2419
Cfr42I	CCGCGG	1 cut(s)	513
CseI	GACGC	2 cut(s)	233, 1784
CsiI	ACCWGGT	1 cut(s)	1738
Csp6I	GTAC	6 cut(s)	358, 451, 789, 988, 1405, 1669
CspAI	ACCGGT	1 cut(s)	1162
CviQI	GTAC	6 cut(s)	358, 451, 789, 988, 1405, 1669
DdeI	CTNAG	5 cut(s)	1302, 1674, 2273, 2714, 2763
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	4 cut(s)	1101, 1383, 1434, 1704
DpnII	GATC	4 cut(s)	1099, 1381, 1432, 1702
DraI	TTTAAA	2 cut(s)	520, 2217
EaeI	YGGCCR	4 cut(s)	253, 277, 1363, 2461
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
EciI	GGCGGA	2 cut(s)	157, 2549
EclXI	CGGCCG	1 cut(s)	277
Eco105I	TACGTA	1 cut(s)	1526
Eco147I	AGGCCT	2 cut(s)	248, 557
Eco24I	GRGCYC	1 cut(s)	2346
Eco32I	GATATC	1 cut(s)	2772
Eco47I	GGWCC	1 cut(s)	2419
Eco47III	AGCGCT	1 cut(s)	2816
Eco52I	CGGCCG	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	1475, 2259, 2432
Eco88I	CYCGRG	1 cut(s)	1002
Eco91I	GGTNACC	1 cut(s)	1141
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	1141
EcoRI	GAATTC	3 cut(s)	739, 1977, 2064
EcoRII	CCWGG	2 cut(s)	243, 1738
EcoRV	GATATC	1 cut(s)	2772
EcoT22I	ATGCAT	2 cut(s)	652, 2170
EcoT38I	GRGCYC	1 cut(s)	2346
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
Esp3I	CGTCTC	2 cut(s)	304, 1319
FalI	AAGNNNNNCTT	2 cut(s)	1821, 1853
FauI	CCCGC	3 cut(s)	112, 350, 395
FblI	GTMKAC	1 cut(s)	2178
Fnu4HI	GCNGC	9 cut(s)	171, 256, 280, 510, 1269, 1894, 2388, 2464, 2760
FriOI	GRGCYC	1 cut(s)	2346
Fsp4HI	GCNGC	9 cut(s)	171, 256, 280, 510, 1269, 1894, 2388, 2464, 2760
FspBI	CTAG	5 cut(s)	1071, 1799, 1844, 2253, 2333
FspI	TGCGCA	1 cut(s)	2735
GlaI	GCGC	4 cut(s)	235, 508, 2735, 2816
GluI	GCNGC	9 cut(s)	171, 256, 280, 510, 1269, 1894, 2388, 2464, 2760
GsaI	CCCAGC	3 cut(s)	876, 2091, 2189
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	3 cut(s)	237, 510, 2818
HaeIII	GGCC	9 cut(s)	5, 248, 255, 279, 557, 1365, 2445, 2463, 2838
HapII	CCGG	6 cut(s)	156, 276, 833, 1163, 2346, 2422
HgaI	GACGC	2 cut(s)	233, 1784
HhaI	GCGC	4 cut(s)	236, 509, 2736, 2817
Hin1I	GRCGYC	2 cut(s)	225, 234
Hin6I	GCGC	4 cut(s)	234, 507, 2734, 2815
HinP1I	GCGC	4 cut(s)	234, 507, 2734, 2815
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	2211, 2666
HpaII	CCGG	6 cut(s)	156, 276, 833, 1163, 2346, 2422
Hpy166II	GTNNAC	8 cut(s)	852, 1592, 1763, 1778, 2179, 2553, 2579, 2623
Hpy188I	TCNGA	8 cut(s)	382, 631, 763, 1183, 1223, 1677, 2451, 2585
Hpy188III	TCNNGA	8 cut(s)	456, 833, 1071, 1235, 1345, 1436, 1688, 2615
Hpy8I	GTNNAC	8 cut(s)	852, 1592, 1763, 1778, 2179, 2553, 2579, 2623
Hpy99I	CGWCG	2 cut(s)	847, 1603
HpyCH4III	ACNGT	5 cut(s)	856, 1147, 1785, 1925, 2373
HpyCH4IV	ACGT	3 cut(s)	791, 845, 1525
HpyF3I	CTNAG	5 cut(s)	1302, 1674, 2273, 2714, 2763
HpySE526I	ACGT	3 cut(s)	791, 845, 1525
Hsp92I	GRCGYC	2 cut(s)	225, 234
HspAI	GCGC	4 cut(s)	234, 507, 2734, 2815
KasI	GGCGCC	1 cut(s)	233
Kpn2I	TCCGGA	1 cut(s)	832
KspI	CCGCGG	1 cut(s)	513
Kzo9I	GATC	4 cut(s)	1099, 1381, 1432, 1702
LmnI	GCTCC	4 cut(s)	291, 1091, 2005, 2341
Lsp1109I	GCAGC	4 cut(s)	1280, 1880, 2374, 2746
LweI	GCATC	5 cut(s)	354, 1955, 2115, 2399, 2745
MabI	ACCWGGT	1 cut(s)	1738
MaeI	CTAG	5 cut(s)	1071, 1799, 1844, 2253, 2333
MaeII	ACGT	3 cut(s)	791, 845, 1525
MaeIII	GTNAC	7 cut(s)	405, 1141, 1158, 1211, 2078, 2510, 2750
MalI	GATC	4 cut(s)	1101, 1383, 1434, 1704
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	4 cut(s)	1099, 1381, 1432, 1702
MfeI	CAATTG	2 cut(s)	480, 2201
MflI	RGATCY	2 cut(s)	1381, 1432
MhlI	GDGCHC	3 cut(s)	1477, 1765, 2346
MlsI	TGGCCA	1 cut(s)	1365
MluNI	TGGCCA	1 cut(s)	1365
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	3 cut(s)	1187, 2537, 2727
MmeI	TCCRAC	4 cut(s)	664, 1161, 1521, 2450
Mox20I	TGGCCA	1 cut(s)	1365
Mph1103I	ATGCAT	2 cut(s)	652, 2170
MroI	TCCGGA	1 cut(s)	832
MroXI	GAANNNNTTC	2 cut(s)	422, 1052
MscI	TGGCCA	1 cut(s)	1365
MslI	CAYNNNNRTG	3 cut(s)	353, 1874, 1986
Msp20I	TGGCCA	1 cut(s)	1365
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	6 cut(s)	156, 276, 833, 1163, 2346, 2422
MspR9I	CCNGG	3 cut(s)	245, 1740, 2346
MssI	GTTTAAAC	1 cut(s)	520
MunI	CAATTG	2 cut(s)	480, 2201
Mva1269I	GAATGC	5 cut(s)	439, 652, 1054, 1354, 1657
MvaI	CCWGG	2 cut(s)	245, 1740
MvnI	CGCG	1 cut(s)	512
NarI	GGCGCC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	2346
NdeII	GATC	4 cut(s)	1099, 1381, 1432, 1702
NlaIV	GGNNCC	5 cut(s)	15, 235, 1434, 2343, 2420
NmuCI	GTSAC	3 cut(s)	1141, 2510, 2750
NsbI	TGCGCA	1 cut(s)	2735
NsiI	ATGCAT	2 cut(s)	652, 2170
NspI	RCATGY	5 cut(s)	973, 2079, 2172, 2185, 2236
NspV	TTCGAA	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	1002
PagI	TCATGA	1 cut(s)	2614
PaqCI	CACCTGC	1 cut(s)	1297
PceI	AGGCCT	2 cut(s)	248, 557
PciI	ACATGT	1 cut(s)	969
PctI	GAATGC	5 cut(s)	439, 652, 1054, 1354, 1657
PdmI	GAANNNNTTC	2 cut(s)	422, 1052
PfeI	GAWTC	7 cut(s)	383, 689, 904, 1507, 1544, 1731, 2603
PflFI	GACNNNGTC	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	1162
PkrI	GCNGC	9 cut(s)	172, 257, 281, 511, 1270, 1895, 2389, 2465, 2761
PleI	GAGTC	3 cut(s)	1186, 2536, 2726
PluTI	GGCGCC	1 cut(s)	237
PmeI	GTTTAAAC	1 cut(s)	520
PpsI	GAGTC	3 cut(s)	1186, 2536, 2726
Ppu21I	YACGTR	1 cut(s)	1526
PscI	ACATGT	1 cut(s)	969
PsiI	TTATAA	2 cut(s)	1961, 2292
Psp6I	CCWGG	2 cut(s)	243, 1738
PspEI	GGTNACC	1 cut(s)	1141
PspFI	CCCAGC	3 cut(s)	872, 2087, 2185
PspGI	CCWGG	2 cut(s)	243, 1738
PspN4I	GGNNCC	5 cut(s)	15, 235, 1434, 2343, 2420
PspPI	GGNCC	1 cut(s)	2419
PspXI	VCTCGAGB	1 cut(s)	1002
PstNI	CAGNNNCTG	1 cut(s)	2606
PsuI	RGATCY	2 cut(s)	1381, 1432
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	6 cut(s)	359, 452, 790, 989, 1406, 1670
RsaNI	GTAC	6 cut(s)	358, 451, 789, 988, 1405, 1669
RseI	CAYNNNNRTG	3 cut(s)	353, 1874, 1986
SacII	CCGCGG	1 cut(s)	513
SatI	GCNGC	9 cut(s)	171, 256, 280, 510, 1269, 1894, 2388, 2464, 2760
Sau3AI	GATC	4 cut(s)	1099, 1381, 1432, 1702
Sau96I	GGNCC	1 cut(s)	2419
SchI	GAGTC	3 cut(s)	1187, 2537, 2727
ScrFI	CCNGG	3 cut(s)	245, 1740, 2346
SduI	GDGCHC	3 cut(s)	1477, 1765, 2346
SexAI	ACCWGGT	1 cut(s)	1738
SfaNI	GCATC	5 cut(s)	354, 1955, 2115, 2399, 2745
SfcI	CTRYAG	1 cut(s)	2281
SfoI	GGCGCC	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	1002
Sfr303I	CCGCGG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	399
SgrBI	CCGCGG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	2419
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	3 cut(s)	353, 1874, 1986
SmlI	CTYRAG	2 cut(s)	454, 1002
SmoI	CTYRAG	2 cut(s)	454, 1002
SnaBI	TACGTA	1 cut(s)	1526
SseBI	AGGCCT	2 cut(s)	248, 557
SspDI	GGCGCC	1 cut(s)	233
SspI	AATATT	2 cut(s)	2114, 2646
SspMI	CTAG	5 cut(s)	1071, 1799, 1844, 2253, 2333
StuI	AGGCCT	2 cut(s)	248, 557
StyD4I	CCNGG	3 cut(s)	243, 1738, 2344
TaaI	ACNGT	5 cut(s)	856, 1147, 1785, 1925, 2373
TaiI	ACGT	3 cut(s)	794, 848, 1528
TaqI	TCGA	8 cut(s)	270, 399, 743, 1003, 1598, 1701, 1711, 2375
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	5 cut(s)	173, 258, 282, 512, 2466
TfiI	GAWTC	7 cut(s)	383, 689, 904, 1507, 1544, 1731, 2603
TscAI	CASTG	4 cut(s)	434, 1647, 1770, 2718
TseFI	GTSAC	3 cut(s)	1141, 2510, 2750
TseI	GCWGC	4 cut(s)	1268, 1893, 2387, 2759
Tsp45I	GTSAC	3 cut(s)	1141, 2510, 2750
TspGWI	ACGGA	2 cut(s)	1010, 2804
TspRI	CASTG	4 cut(s)	434, 1647, 1770, 2718
Tth111I	GACNNNGTC	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	1761
VpaK11BI	GGWCC	1 cut(s)	2419
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	7 cut(s)	724, 739, 1484, 1635, 1977, 2064, 2256
XbaI	TCTAGA	1 cut(s)	1070
XceI	RCATGY	5 cut(s)	973, 2079, 2172, 2185, 2236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1373
XhoI	CTCGAG	1 cut(s)	1002
XmiI	GTMKAC	1 cut(s)	2178
XmnI	GAANNNNTTC	2 cut(s)	422, 1052
XspI	CTAG	5 cut(s)	1071, 1799, 1844, 2253, 2333
Zsp2I	ATGCAT	2 cut(s)	652, 2170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.