Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Forward (+)

64336397 .. 64339294

Gene Structure 2898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGGCCTCTGTGGCACCACCACCACTCCCATTCTCAGATCATCATCATCATCCCCTGCTTCCCAAACCAAACCCCAAACACTCCATTCTGACACCAAAATCTTCACTTTCTTTCTCTCCCACTCAAACCACCTCTCTCCCTCCAACCAGAACCAATTCACTCCAAGACCTCAACCACCTCTGCAACTCCGGCAACCTCTCCGCCGCTCTCACCCTCCTCCAAACCAATGCCTTCCCCACCTCACAGCACCTCAAAGACGCCATCGGCGCCCTCCTCCAGGCCTGTGGCCGCCACAAGGACATCGAAACCGGGCGCAAGCTCCACCACCTCGTCTCCCAATCCACCCACTTCACCCACGACTTTGTCCTCAACACCCGCATCATCACCATGTACTCAATGTGCAACTCTCCTTCCGATTCCCGCCTCGTTTTCGATGGGTTACAGAGAAAGAACCTGTTCCAGTGGAATGCTCTGGTTAGTGGGTACTCAAGAAACGAGCTTTATGAGGAAGCAATTGGTGCCTTTATTAAGTTGATAAGCGCCGCGGAGTTTAAACCCGATAATTTTACAATGCCTTGTGTGATCAAGGCCTGTGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATGGGTTTGGTTTCGGATGTGTTTGTGGGGAATGCATTGATTGCGGTGTATGGGAAATTTGGGTTTGTTGGTGATTCAGTTAAGGTGTTTGAGAAGATGAGTGCGAGGAACTTGGTGTCTTGGAATTCGATGATTGGGGTGTTTTCGGAGAATGGGATGTGTGAAGAGAGTTGTAGGTTGTTGGTGAGGCTTTTGGAGGGTGAGGAAGGGTTTGTTCCGGATGAGGCGACGTTGGTGACTATATTGCCTGTTTGTGCTGGGAAAGGGGATGTTAGAATGGGGATGGAGATTCATGGTTTGGCGGTGAAGTTGGGGCTGGATAAGGAGTTGATGTTGAGTAATGCCTTGATGGACATGTATTTGAAATGTGGGTACTTAACGGAAGCTCGAGTTTTGTTTGAGAGAAATGAGAGGAAGAATGTGGTGTCTTGGAATGCTTTCATAGGAGGTTATTCTAGACAAGGGGATGTTAGTGGAGCATTTGATCTTTTGCGGAAAATGCAGGTGGAGGAGAAGGTGAATGAGGTCACCGTCTTAAATGTGTTACCGGTTTTTTTAGAGGAGTCAGAGCTTTTGAGCTTGAAAGAGCTTCATGGTTACTCATTCAGACATGGGTTTCAAGATGATGAGCTGGTAGCCAATGCTTTTGTTGCAGCCTATGCGAAATGTGGGTCGCTGAGTTCTGCTGAGCGGGTGTTTTATGGTATTGAGACGAAGACAGTGAGCTCCTGGAATGCAGTTATTGGTGGCCATGCCCAGAATGGAGATCCACAAAAGGCTTTAGATTTGTACCTTCAAATGAAACAATCAGGTTTGGATCCTGACAAGTTTAGCATTGGTAGCCTCCTTTTAGCTTGTGCCCCTCTCAAATTTCTTCAATATGGTAAAGAGATTCATGGGTTTGTGCTACGTAATGGGTTAGAGTTGGATTCATTTATTGGTATTTCATTACTATCCTTTTACATCCAATGTGGTAAACTATCGACGGCAAGAGCATTATTTGATAGGATGGAAGATAAAATTCCAGTGTCATGGAATGCAATAATCTCTGGTTACTCTCAGATTGGACTTCCTGATGAAGCCCTCGATCTCTTTCAACTAATGCTGTCTAATGGAATCCTACCTGGTGAAATAGCCACAATGAGTGCACTGGGGGCTTGTTCACAACTGTCAGCTTTGCGTCTAGGGAAAGAACTGCATTGTTTTGCTTTGAAAGCACGCCTTACACTAGACCTGTTTGTTGGTTGTTCTCTCATAGATATGTATGCAAAAAGTGGCTGCATAGAACAATCTCACAGGGCATTTGACAGTTTAACAAAGAAAGATGTGGCATCATGGAATGTTATAATTGCAGGGTATGGAATTCATGGACATGGAAACAAGGCTTTAGAGCTATTTGGAGAAATGATAAGTTTGGGGCATAAGCCTGATGTCTTTACATTTCTTGGAATTCTAACTGCATGTAACCATGCTGGGCTTGTTAAAAATGGGCTAAAATATTTCAAAGAGATGCAAAGATTATATGGAATAGAGCCGAAGTTAGAGCATTATGCATGTGTAGTAGACATGCTGGAGTCGGCGGAGATTAGGAAGATGTGGACAAAAGTAGAGGAAAGAATAAGTAAACTCGGATATACACCCAACACAGATTCTGTGCTTCATGAACTGGACTATACAGAGAAGATTGAAATATTGAGGGGGCATAGTGAAAAGCTGGCAATTTCATTTGGATTGTTAAAGATGAATAAAGGTGCTACACTGAGAGTCTGTAAAAATCTGCGCATCTGCATAGATTGTCACAATGCTGCTAAGTTGATATCGAAGGCTGTTGAAACGGAGATAATTGTGAGAGACAACAAGCGCTTCCATCATTTCAAAGATGGCCTCTGTTCTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

853

Amino Acids

94.13

Weight (kDa)

6.77

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	355 - 384	3e-06	PPR repeat family
PPR_2	PF13041	456 - 503	6.1e-10	PPR repeat family
PPR	PF01535	459 - 488	3.3e-07	PPR repeat
PPR	PF01535	559 - 589	7.5e-09	PPR repeat
PPR_2	PF13041	559 - 593	1.9e-06	PPR repeat family
PPR_2	PF13041	657 - 704	4e-11	PPR repeat family
PPR	PF01535	661 - 689	2.2e-06	PPR repeat
DYW_deaminase	PF14432	760 - 852	2.3e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1994
AarI	CACCTGC	1 cut(s)	1141
Acc16I	TGCGCA	1 cut(s)	2429
Acc36I	ACCTGC	1 cut(s)	1141
AccB1I	GGYRCC	3 cut(s)	13, 266, 518
AccBSI	CCGCTC	2 cut(s)	206, 1339
AccI	GTMKAC	1 cut(s)	2211
AccII	CGCG	1 cut(s)	545
AccIII	TCCGGA	1 cut(s)	865
AclWI	GGATC	3 cut(s)	1409, 1460, 1473
AcoI	YGGCCR	2 cut(s)	286, 1396
AcsI	RAATTY	6 cut(s)	704, 772, 1517, 1668, 2010, 2097
AcyI	GRCGYC	2 cut(s)	258, 267
AfaI	GTAC	4 cut(s)	392, 485, 1022, 1439
AfeI	AGCGCT	1 cut(s)	2510
AfiI	CCNNNNNNNGG	3 cut(s)	277, 295, 597
AflIII	ACRYGT	1 cut(s)	1002
AgeI	ACCGGT	1 cut(s)	1195
AjnI	CCWGG	3 cut(s)	276, 1376, 1771
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
Alw21I	GWGCWC	2 cut(s)	1376, 1798
Alw26I	GTCTC	3 cut(s)	337, 1352, 2493
Alw44I	GTGCAC	1 cut(s)	1794
AlwI	GGATC	3 cut(s)	1409, 1460, 1473
AlwNI	CAGNNNCTG	1 cut(s)	2300
Ama87I	CYCGRG	1 cut(s)	1035
Aor13HI	TCCGGA	1 cut(s)	865
Aor51HI	AGCGCT	1 cut(s)	2510
AoxI	GGCC	6 cut(s)	3, 279, 286, 588, 1396, 2530
ApaLI	GTGCAC	1 cut(s)	1794
ApeKI	GCWGC	3 cut(s)	1301, 1926, 2453
ApoI	RAATTY	6 cut(s)	704, 772, 1517, 1668, 2010, 2097
ArsI	GACNNNNNNTTYG	2 cut(s)	1304, 1336
AsiGI	ACCGGT	1 cut(s)	1195
Asp700I	GAANNNNTTC	3 cut(s)	154, 455, 1085
AspLEI	GCGC	5 cut(s)	269, 315, 542, 2430, 2511
AsuC2I	CCSGG	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	1035
BaeGI	GKGCMC	2 cut(s)	1510, 1798
BalI	TGGCCA	1 cut(s)	1398
BamHI	GGATCC	1 cut(s)	1465
BanI	GGYRCC	3 cut(s)	13, 266, 518
BanII	GRGCYC	1 cut(s)	1376
BbsI	GAAGAC	1 cut(s)	1370
Bbv12I	GWGCWC	2 cut(s)	1376, 1798
BbvI	GCAGC	3 cut(s)	1313, 1913, 2440
BccI	CCATC	9 cut(s)	269, 428, 631, 643, 925, 991, 1651, 2522, 2523
BceAI	ACGGC	1 cut(s)	1650
BciT130I	CCWGG	3 cut(s)	278, 1378, 1773
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	337, 1352, 2493
BfaI	CTAG	3 cut(s)	1104, 1832, 1877
BfoI	RGCGCY	3 cut(s)	270, 543, 2512
BfuAI	ACCTGC	1 cut(s)	1141
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	6 cut(s)	204, 289, 543, 1302, 1927, 2454
BlpI	GCTNAGC	1 cut(s)	1335
BlsI	GCNGC	6 cut(s)	205, 290, 544, 1303, 1928, 2455
Bme1390I	CCNGG	4 cut(s)	278, 310, 1378, 1773
BmeT110I	CYCGRG	1 cut(s)	1035
BmiI	GGNNCC	4 cut(s)	15, 268, 520, 1467
BmrFI	CCNGG	4 cut(s)	278, 310, 1378, 1773
BmrI	ACTGGG	1 cut(s)	1808
BmsI	GCATC	4 cut(s)	387, 1988, 2148, 2439
BmuI	ACTGGG	1 cut(s)	1808
BpiI	GAAGAC	1 cut(s)	1370
BpmI	CTGGAG	2 cut(s)	260, 2240
Bpu1102I	GCTNAGC	1 cut(s)	1335
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	1559
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	2 cut(s)	258, 267
BsaJI	CCNNGG	1 cut(s)	543
BsaWI	WCCGGW	2 cut(s)	865, 1195
BsaXI	ACNNNNNCTCC	6 cut(s)	9, 39, 317, 347, 965, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 295, 597
Bse118I	RCCGGY	1 cut(s)	1195
Bse1I	ACTGG	4 cut(s)	460, 1673, 1803, 2319
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	865
BseBI	CCWGG	3 cut(s)	278, 1378, 1773
BseDI	CCNNGG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	277, 295, 597
BseMII	CTCAG	5 cut(s)	48, 1316, 1326, 1721, 2399
BseNI	ACTGG	4 cut(s)	460, 1673, 1803, 2319
BseRI	GAGGAG	4 cut(s)	206, 263, 1172, 1223
BseSI	GKGCMC	2 cut(s)	1510, 1798
BseXI	GCAGC	3 cut(s)	1313, 1913, 2440
BseYI	CCCAGC	2 cut(s)	905, 2120
Bsh1236I	CGCG	1 cut(s)	545
BshFI	GGCC	6 cut(s)	5, 281, 288, 590, 1398, 2532
BshNI	GGYRCC	3 cut(s)	13, 266, 518
BshTI	ACCGGT	1 cut(s)	1195
BsiHKAI	GWGCWC	2 cut(s)	1376, 1798
BsiHKCI	CYCGRG	1 cut(s)	1035
BsiSI	CCGG	4 cut(s)	189, 309, 866, 1196
BslI	CCNNNNNNNGG	3 cut(s)	277, 295, 597
BsmAI	GTCTC	3 cut(s)	337, 1352, 2493
BsmBI	CGTCTC	2 cut(s)	337, 1352
BsmI	GAATGC	5 cut(s)	472, 685, 1087, 1387, 1690
BsnI	GGCC	6 cut(s)	5, 281, 288, 590, 1398, 2532
BsoBI	CYCGRG	1 cut(s)	1035
Bsp1286I	GDGCHC	3 cut(s)	1376, 1510, 1798
Bsp13I	TCCGGA	1 cut(s)	865
Bsp143I	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
Bsp1720I	GCTNAGC	1 cut(s)	1335
BspANI	GGCC	6 cut(s)	5, 281, 288, 590, 1398, 2532
BspCNI	CTCAG	5 cut(s)	47, 1317, 1327, 1720, 2400
BspEI	TCCGGA	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	545
BspHI	TCATGA	1 cut(s)	2308
BspLI	GGNNCC	4 cut(s)	15, 268, 520, 1467
BspMI	ACCTGC	1 cut(s)	1141
BspPI	GGATC	3 cut(s)	1409, 1460, 1473
BspT107I	GGYRCC	3 cut(s)	13, 266, 518
BsrBI	CCGCTC	2 cut(s)	206, 1339
BsrFI	RCCGGY	1 cut(s)	1195
BsrI	ACTGG	4 cut(s)	460, 1673, 1803, 2319
BssAI	RCCGGY	1 cut(s)	1195
BssECI	CCNNGG	1 cut(s)	543
BssMI	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
BssNI	GRCGYC	2 cut(s)	258, 267
Bst2UI	CCWGG	3 cut(s)	278, 1378, 1773
Bst4CI	ACNGT	4 cut(s)	1180, 1369, 1818, 1958
Bst6I	CTCTTC	1 cut(s)	807
BstACI	GRCGYC	2 cut(s)	258, 267
BstAPI	GCANNNNNTGC	3 cut(s)	518, 689, 1307
BstBAI	YACGTR	1 cut(s)	1559
BstC8I	GCNNGC	3 cut(s)	317, 1867, 2364
BstDEI	CTNAG	6 cut(s)	34, 1325, 1335, 1707, 2408, 2457
BstDSI	CCRYGG	1 cut(s)	543
BstEII	GGTNACC	1 cut(s)	1174
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	545
BstH2I	RGCGCY	3 cut(s)	270, 543, 2512
BstHHI	GCGC	5 cut(s)	269, 315, 542, 2430, 2511
BstKTI	GATC	6 cut(s)	40, 585, 1135, 1417, 1468, 1738
BstMAI	GTCTC	3 cut(s)	337, 1352, 2493
BstMBI	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
BstNI	CCWGG	3 cut(s)	278, 1378, 1773
BstNSI	RCATGY	4 cut(s)	1006, 2112, 2205, 2218
BstPI	GGTNACC	1 cut(s)	1174
BstSCI	CCNGG	4 cut(s)	276, 308, 1376, 1771
BstSLI	GKGCMC	2 cut(s)	1510, 1798
BstSNI	TACGTA	1 cut(s)	1559
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	3 cut(s)	1313, 1913, 2440
BstV2I	GAAGAC	1 cut(s)	1370
BstX2I	RGATCY	2 cut(s)	1414, 1465
BstXI	CCANNNNNNTGG	2 cut(s)	284, 1680
BstYI	RGATCY	2 cut(s)	1414, 1465
BsuRI	GGCC	6 cut(s)	5, 281, 288, 590, 1398, 2532
BtgI	CCRYGG	1 cut(s)	543
BtsIMutI	CAGTG	5 cut(s)	467, 1374, 1680, 1796, 2405
BveI	ACCTGC	1 cut(s)	1141
Cac8I	GCNNGC	3 cut(s)	317, 1867, 2364
CaiI	CAGNNNCTG	1 cut(s)	2300
CciI	TCATGA	1 cut(s)	2308
CfoI	GCGC	5 cut(s)	269, 315, 542, 2430, 2511
Cfr10I	RCCGGY	1 cut(s)	1195
Cfr42I	CCGCGG	1 cut(s)	546
CseI	GACGC	2 cut(s)	266, 1817
CsiI	ACCWGGT	1 cut(s)	1771
Csp6I	GTAC	4 cut(s)	391, 484, 1021, 1438
CspAI	ACCGGT	1 cut(s)	1195
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviQI	GTAC	4 cut(s)	391, 484, 1021, 1438
DdeI	CTNAG	6 cut(s)	34, 1325, 1335, 1707, 2408, 2457
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	6 cut(s)	39, 584, 1134, 1416, 1467, 1737
DpnII	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	286, 1396
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
EciI	GGCGGA	2 cut(s)	190, 2243
Ecl136II	GAGCTC	1 cut(s)	1374
Eco105I	TACGTA	1 cut(s)	1559
Eco147I	AGGCCT	2 cut(s)	281, 590
Eco24I	GRGCYC	1 cut(s)	1376
Eco32I	GATATC	1 cut(s)	2466
Eco47III	AGCGCT	1 cut(s)	2510
Eco53kI	GAGCTC	1 cut(s)	1374
Eco88I	CYCGRG	1 cut(s)	1035
Eco91I	GGTNACC	1 cut(s)	1174
EcoICRI	GAGCTC	1 cut(s)	1374
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	1174
EcoRI	GAATTC	3 cut(s)	772, 2010, 2097
EcoRII	CCWGG	3 cut(s)	276, 1376, 1771
EcoRV	GATATC	1 cut(s)	2466
EcoT22I	ATGCAT	2 cut(s)	685, 2203
EcoT38I	GRGCYC	1 cut(s)	1376
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
Esp3I	CGTCTC	2 cut(s)	337, 1352
FalI	AAGNNNNNCTT	2 cut(s)	1854, 1886
FauI	CCCGC	3 cut(s)	383, 428, 1332
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	2211
Fnu4HI	GCNGC	6 cut(s)	204, 289, 543, 1302, 1927, 2454
FriOI	GRGCYC	1 cut(s)	1376
Fsp4HI	GCNGC	6 cut(s)	204, 289, 543, 1302, 1927, 2454
FspBI	CTAG	3 cut(s)	1104, 1832, 1877
FspI	TGCGCA	1 cut(s)	2429
GlaI	GCGC	5 cut(s)	268, 314, 541, 2429, 2510
GluI	GCNGC	6 cut(s)	204, 289, 543, 1302, 1927, 2454
GsaI	CCCAGC	2 cut(s)	909, 2124
GsuI	CTGGAG	2 cut(s)	260, 2240
HaeII	RGCGCY	3 cut(s)	270, 543, 2512
HaeIII	GGCC	6 cut(s)	5, 281, 288, 590, 1398, 2532
HapII	CCGG	4 cut(s)	189, 309, 866, 1196
HgaI	GACGC	2 cut(s)	266, 1817
HhaI	GCGC	5 cut(s)	269, 315, 542, 2430, 2511
Hin1I	GRCGYC	2 cut(s)	258, 267
Hin6I	GCGC	5 cut(s)	267, 313, 540, 2428, 2509
HinP1I	GCGC	5 cut(s)	267, 313, 540, 2428, 2509
HpaII	CCGG	4 cut(s)	189, 309, 866, 1196
Hpy166II	GTNNAC	6 cut(s)	1625, 1796, 1811, 2212, 2247, 2273
Hpy188I	TCNGA	9 cut(s)	37, 90, 415, 664, 796, 1216, 1256, 1710, 2279
Hpy188III	TCNNGA	7 cut(s)	489, 866, 1104, 1268, 1469, 1721, 2309
Hpy8I	GTNNAC	6 cut(s)	1625, 1796, 1811, 2212, 2247, 2273
Hpy99I	CGWCG	2 cut(s)	880, 1636
HpyAV	CCTTC	6 cut(s)	241, 420, 848, 1156, 1451, 2464
HpyCH4III	ACNGT	4 cut(s)	1180, 1369, 1818, 1958
HpyCH4IV	ACGT	2 cut(s)	878, 1558
HpyF3I	CTNAG	6 cut(s)	34, 1325, 1335, 1707, 2408, 2457
HpySE526I	ACGT	2 cut(s)	878, 1558
Hsp92I	GRCGYC	2 cut(s)	258, 267
HspAI	GCGC	5 cut(s)	267, 313, 540, 2428, 2509
KasI	GGCGCC	1 cut(s)	266
Kpn2I	TCCGGA	1 cut(s)	865
Ksp22I	TGATCA	1 cut(s)	582
KspI	CCGCGG	1 cut(s)	546
Kzo9I	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
LmnI	GCTCC	3 cut(s)	324, 1124, 1379
Lsp1109I	GCAGC	3 cut(s)	1313, 1913, 2440
LweI	GCATC	4 cut(s)	387, 1988, 2148, 2439
MabI	ACCWGGT	1 cut(s)	1771
MaeI	CTAG	3 cut(s)	1104, 1832, 1877
MaeII	ACGT	2 cut(s)	878, 1558
MaeIII	GTNAC	8 cut(s)	438, 883, 1174, 1191, 1244, 1700, 2111, 2444
MalI	GATC	6 cut(s)	39, 584, 1134, 1416, 1467, 1737
MbiI	CCGCTC	2 cut(s)	206, 1339
MboI	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	2 cut(s)	1414, 1465
MhlI	GDGCHC	3 cut(s)	1376, 1510, 1798
MlsI	TGGCCA	1 cut(s)	1398
MluNI	TGGCCA	1 cut(s)	1398
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	3 cut(s)	1220, 2231, 2421
MmeI	TCCRAC	2 cut(s)	167, 1554
Mox20I	TGGCCA	1 cut(s)	1398
Mph1103I	ATGCAT	2 cut(s)	685, 2203
MroI	TCCGGA	1 cut(s)	865
MroXI	GAANNNNTTC	3 cut(s)	154, 455, 1085
MscI	TGGCCA	1 cut(s)	1398
MseI	TTAA	8 cut(s)	528, 552, 729, 1025, 1184, 1961, 2130, 2384
MslI	CAYNNNNRTG	3 cut(s)	386, 1907, 2019
Msp20I	TGGCCA	1 cut(s)	1398
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	4 cut(s)	189, 309, 866, 1196
MspR9I	CCNGG	4 cut(s)	278, 310, 1378, 1773
MssI	GTTTAAAC	1 cut(s)	553
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	5 cut(s)	472, 685, 1087, 1387, 1690
MvaI	CCWGG	3 cut(s)	278, 1378, 1773
MvnI	CGCG	1 cut(s)	545
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
NlaIV	GGNNCC	4 cut(s)	15, 268, 520, 1467
NmuCI	GTSAC	3 cut(s)	883, 1174, 2444
NsbI	TGCGCA	1 cut(s)	2429
NsiI	ATGCAT	2 cut(s)	685, 2203
NspI	RCATGY	4 cut(s)	1006, 2112, 2205, 2218
PaeR7I	CTCGAG	1 cut(s)	1035
PagI	TCATGA	1 cut(s)	2308
PaqCI	CACCTGC	1 cut(s)	1141
PceI	AGGCCT	2 cut(s)	281, 590
PciI	ACATGT	1 cut(s)	1002
PctI	GAATGC	5 cut(s)	472, 685, 1087, 1387, 1690
PdmI	GAANNNNTTC	3 cut(s)	154, 455, 1085
PfeI	GAWTC	7 cut(s)	416, 722, 937, 1540, 1577, 1764, 2297
PflFI	GACNNNGTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	1376
PinAI	ACCGGT	1 cut(s)	1195
PkrI	GCNGC	6 cut(s)	205, 290, 544, 1303, 1928, 2455
PleI	GAGTC	3 cut(s)	1219, 2230, 2420
PluTI	GGCGCC	1 cut(s)	270
PmeI	GTTTAAAC	1 cut(s)	553
PpsI	GAGTC	3 cut(s)	1219, 2230, 2420
Ppu21I	YACGTR	1 cut(s)	1559
PscI	ACATGT	1 cut(s)	1002
PsiI	TTATAA	1 cut(s)	1994
Psp124BI	GAGCTC	1 cut(s)	1376
Psp6I	CCWGG	3 cut(s)	276, 1376, 1771
PspEI	GGTNACC	1 cut(s)	1174
PspFI	CCCAGC	2 cut(s)	905, 2120
PspGI	CCWGG	3 cut(s)	276, 1376, 1771
PspN4I	GGNNCC	4 cut(s)	15, 268, 520, 1467
PspXI	VCTCGAGB	1 cut(s)	1035
PstNI	CAGNNNCTG	1 cut(s)	2300
PsuI	RGATCY	2 cut(s)	1414, 1465
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	4 cut(s)	392, 485, 1022, 1439
RsaNI	GTAC	4 cut(s)	391, 484, 1021, 1438
RseI	CAYNNNNRTG	3 cut(s)	386, 1907, 2019
SacI	GAGCTC	1 cut(s)	1376
SacII	CCGCGG	1 cut(s)	546
SaqAI	TTAA	8 cut(s)	528, 552, 729, 1025, 1184, 1961, 2130, 2384
SatI	GCNGC	6 cut(s)	204, 289, 543, 1302, 1927, 2454
Sau3AI	GATC	6 cut(s)	37, 582, 1132, 1414, 1465, 1735
SchI	GAGTC	3 cut(s)	1220, 2231, 2421
ScrFI	CCNGG	4 cut(s)	278, 310, 1378, 1773
SduI	GDGCHC	3 cut(s)	1376, 1510, 1798
SexAI	ACCWGGT	1 cut(s)	1771
SfaNI	GCATC	4 cut(s)	387, 1988, 2148, 2439
SfoI	GGCGCC	1 cut(s)	268
Sfr274I	CTCGAG	1 cut(s)	1035
Sfr303I	CCGCGG	1 cut(s)	546
SgrBI	CCGCGG	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	1035
SmiMI	CAYNNNNRTG	3 cut(s)	386, 1907, 2019
SmlI	CTYRAG	2 cut(s)	487, 1035
SmoI	CTYRAG	2 cut(s)	487, 1035
SnaBI	TACGTA	1 cut(s)	1559
SseBI	AGGCCT	2 cut(s)	281, 590
SspDI	GGCGCC	1 cut(s)	266
SspI	AATATT	2 cut(s)	2147, 2340
SspMI	CTAG	3 cut(s)	1104, 1832, 1877
SstI	GAGCTC	1 cut(s)	1376
StuI	AGGCCT	2 cut(s)	281, 590
StyD4I	CCNGG	4 cut(s)	276, 308, 1376, 1771
TaaI	ACNGT	4 cut(s)	1180, 1369, 1818, 1958
TaiI	ACGT	2 cut(s)	881, 1561
TaqI	TCGA	7 cut(s)	303, 432, 776, 1036, 1631, 1734, 2468
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	3 cut(s)	206, 291, 545
TfiI	GAWTC	7 cut(s)	416, 722, 937, 1540, 1577, 1764, 2297
Tru1I	TTAA	8 cut(s)	528, 552, 729, 1025, 1184, 1961, 2130, 2384
Tru9I	TTAA	8 cut(s)	528, 552, 729, 1025, 1184, 1961, 2130, 2384
TscAI	CASTG	5 cut(s)	467, 1374, 1680, 1803, 2412
TseFI	GTSAC	3 cut(s)	883, 1174, 2444
TseI	GCWGC	3 cut(s)	1301, 1926, 2453
Tsp45I	GTSAC	3 cut(s)	883, 1174, 2444
TspGWI	ACGGA	2 cut(s)	1043, 2498
TspRI	CASTG	5 cut(s)	467, 1374, 1680, 1803, 2412
Tth111I	GACNNNGTC	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	1794
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	6 cut(s)	704, 772, 1517, 1668, 2010, 2097
XbaI	TCTAGA	1 cut(s)	1103
XceI	RCATGY	4 cut(s)	1006, 2112, 2205, 2218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1406
XhoI	CTCGAG	1 cut(s)	1035
XmiI	GTMKAC	1 cut(s)	2211
XmnI	GAANNNNTTC	3 cut(s)	154, 455, 1085
XspI	CTAG	3 cut(s)	1104, 1832, 1877
Zsp2I	ATGCAT	2 cut(s)	685, 2203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.