Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Reverse (-)

4145485 .. 4148376

Gene Structure 2892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG062800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2892 bp

ATGGCCTCTGTGGCACCACCACCACTCCCATTCTCATATCATCATCCCCTCCTTCCCAAACCAAACCCCAAATACTCCATTCTCACACCAAAATCTTCACTTTCTTTCTCTCCCACTAAGACCAACTCCCTCCCTCCAACCAAAACCAACTCACTCCAAGACCTCAACCACCTCTGCAACTCCGGCAACCTCTCCGCCGCCCTCACCTTCCTCCAAACCAATGCCTTCCCCACCTCACAGCACCTCAAAGACGCCATCGGCGCCCTCCTCCAGGCCTGTGGCCGCCACAAGGACATCGAAACCGGCCGGAAACTCCACCACCTCGTCTCCCAATCCACCCACTTCACCCACGACTTCGTCCTCAACACCCGCATCATCACCATGTACTCAATGTGCAACTCTCCTTCCGATTCCCGCCTCGTTTTCGAAGGGTTACAGAGGAGGAACTTGTTCCAATGGAATGCTCTGGTTAGTGGGTACTCAAGAAACGAGCTTTATGAGGAAGCAATTGGTACCTTTATTAAGTTGATAAGCGCCGCGGAGTTTAAACCCGATAATTTCACAATGCCTTGTGTGATCAAGGCCTGTGGTGGGCTTTTGGATGTGGGTTTGGGGCAGGGGGTTCATGGGATGGTTGTGAAGATGGGTTTGGTTTCGGATGTGTTTGTGGGGAATGCATTGATTGCGGTGTACGGGAAATTTGGGTTTGTTGGGGATTCAGTTAAGGTGTTTGAGAAAATGAGTGCGAGGAACTTGGTGTCTTGGAATTCGATGATTGGGGTGTTTTCAGAGAATGGGATGTGTGAAGAGAGTTGTAGGTTGTTGGTGAGGCTTTTGGAGGGTGAGGAAGGGTTTGTTCCGGATGAGGCGACGTTGGTGACTGTATTGCCTGTTTGTGCTGGGAAAGGGGATGTTAGAATGGGGATGGAGATTCATGGTTTGGCGGTGAAGTTGGGGCTGGATAAGGAGTTGATGTTGAGTAATGCCTTGATGGACATGTATTTGAAATGTGGGTACTTGACGGAAGCTCGAGTTTCGTTTGAGAGAAATGAGAGGAAGAATGTGGTGTCTTGGAATGCTTTCATAGGAGGTTATTCTAGACAAGGGGATGTTAGTGGAGCGTTTGATCTTTTGCGAAAAATGCAGATGAAGGAGAAGGTGAATGAGGTCACCATCTTAAATGTGTTACCGGCTTTTTTAGAGGAGTCGGAACTTTTGAGCTTGAAAGAGCTTCATGGTTACTCATTCAGACATGGGTTTCAAGATGATGAGCTGGTAGTCAATGCTTTTGTTGCAGCCTATGCGAAATGTGGGTCGCTGAGTTCTGCTGAGCAGGTGTTTTATGGTATTGAGACGAAGACAGTGAGCTCCTGGAATGCAGTTATTGGTGGCCATGCCCAGAATGGAGATCCACAAAAGGCTTTAGATTTGTACCTTCAAATGAAACAATCAGGTTTGGATCCTGACAAGTTTAGCATTGGTAGCCTCCTTTTAGCTTGTGCCCACCTCAAATTTCTTCAATATGGTAAAGAGATTCATGGGTTTGTGCTACGTAATGGGTTAGAGTTGGATTCATTTATTGGTATTTCATTACTATCCTTTTACATCCGATGTGGTAAACTATCGAAGGCAAGAGCATTATTTGATAGGATGGAAGATAAAATTCCAGTGTCATGGAATGCAATAATCTCTGGTTACTCTCAGATTGGACTTCCTGATGAAGCCCTCGATCTCTTTCGACTAATGCTGTCTAATGGAATCCTACCTGGTGAAATTGCCACAATGAGTGCACTGGGGGCTTGTTCACAACTGTCAGCTCTGCGTCTAGGGAAAGAACTGCATTGTTTTGCTTTGAAAGCACGCCTTACACTAGACCTGTTTGTTGGTTGTTCTCTCATAGATATGTATGCAAAAAGTGGCTGCATAGAACAATCTCACAGGGCATTTGACAGTTTAACAAAGAGAGATGTGGCATCATGGAATGTTATAATTGCAGGGTATGGAATTCATGGACATGGAAACAAGGCTTTAGAGCTATTTGGAGAAATGATGAGTTTGGGGCATAAACCTGATGTCTTTACATTTCTTGGAATTCTAACTGCATGTAACCATGCTGGGCTTGTTAAAAATGGGCTAAAATATTTCAAAGAGATGCAAAGATTATATGGAATAGAGCCGAAGTTAGAGCATTATGCTTGTGTAGTAGACATGCTGGGTAGGGCTGGTCAATTGGAGGAAGCTTTAAACCTGATAGATAACATGCCTGAAGAACCAGATACTAGAATTTGGAGTTCATTGCTTAGTTCCTGTAGGAATTATAATGATTTGGGAATAGGACAGAAAATTGCTGAAAAATTACTAGAATTGGAGCCCGGAAAGGCAGAGAATTATGTCCTACTGTCGAACTTATATGCTGCATCAGGGAATTGGGATGATGTGAGATGGGTCCGGCAAAGGATGAAGGAGATTGGCCTTCAGAAAGAAGCTGGCCGCAGTTGGATTGAAATTGGAGGGCAAGTGTATAACTTTGTTGCTGGTGACAATTCTCTGCCAGAGTCGGCGGAGATTAGGAAGATGTGGACAAAAGTAGAGGAAAGAATAAGTAAACTCGGATATACACCCAACACAGATTCTGTGCTTCATGAACTGGACTATACAGAGAAGATTGAAATATTGAGGGGGCATAGTGAAAAGCTTGCAATTTCATTTGGATTGTTAAAGATGAATAAAGGTGCTACACTGAGAGTCTGTAAAAATCTGCGCATCTGCATTGATTGTCACAATGCTGCTAAGTTGATATCAAAGGCTGTTGAAACGGAGATAATTGTGAGAGACAACAAGCGCTTCCATCATTTCAAAGATGGCCTCTGTTCTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

963

Amino Acids

106.84

Weight (kDa)

6.85

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	353 - 384	1.5e-06	PPR repeat family
PPR	PF01535	356 - 384	9.6e-06	PPR repeat
PPR_2	PF13041	454 - 502	3.4e-10	PPR repeat family
PPR	PF01535	457 - 486	3.8e-07	PPR repeat
PPR	PF01535	557 - 587	7.5e-09	PPR repeat
PPR_2	PF13041	557 - 591	2.3e-06	PPR repeat family
PPR_2	PF13041	655 - 702	3.8e-11	PPR repeat family
PPR	PF01535	659 - 687	4.4e-06	PPR repeat
E_motif	PF20431	773 - 835	8.2e-18	E motif
DYW_deaminase	PF14432	871 - 963	2.7e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1988, 2319
AarI	CACCTGC	1 cut(s)	1324
Acc16I	TGCGCA	1 cut(s)	2762
Acc36I	ACCTGC	1 cut(s)	1324
Acc65I	GGTACC	1 cut(s)	512
AccB1I	GGYRCC	3 cut(s)	13, 260, 512
AccI	GTMKAC	1 cut(s)	2205
AccII	CGCG	1 cut(s)	539
AccIII	TCCGGA	1 cut(s)	859
AclWI	GGATC	3 cut(s)	1403, 1454, 1467
AcoI	YGGCCR	4 cut(s)	280, 304, 1390, 2488
AcsI	RAATTY	7 cut(s)	698, 766, 1511, 1662, 2004, 2091, 2283
AcuI	CTGAAG	2 cut(s)	2286, 2459
AcyI	GRCGYC	2 cut(s)	252, 261
AfaI	GTAC	6 cut(s)	386, 479, 514, 692, 1016, 1433
AfeI	AGCGCT	1 cut(s)	2843
AfiI	CCNNNNNNNGG	3 cut(s)	271, 289, 591
AflIII	ACRYGT	1 cut(s)	996
AjnI	CCWGG	3 cut(s)	270, 1370, 1765
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
Alw21I	GWGCWC	2 cut(s)	1370, 1792
Alw26I	GTCTC	3 cut(s)	331, 1346, 2826
Alw44I	GTGCAC	1 cut(s)	1788
AlwI	GGATC	3 cut(s)	1403, 1454, 1467
AlwNI	CAGNNNCTG	1 cut(s)	2633
Ama87I	CYCGRG	1 cut(s)	1029
Aor13HI	TCCGGA	1 cut(s)	859
Aor51HI	AGCGCT	1 cut(s)	2843
AoxI	GGCC	9 cut(s)	3, 273, 280, 304, 582, 1390, 2470, 2488, 2863
ApaLI	GTGCAC	1 cut(s)	1788
ApeKI	GCWGC	4 cut(s)	1295, 1920, 2414, 2786
ApoI	RAATTY	7 cut(s)	698, 766, 1511, 1662, 2004, 2091, 2283
ArsI	GACNNNNNNTTYG	2 cut(s)	1298, 1330
Asp700I	GAANNNNTTC	2 cut(s)	449, 1079
Asp718I	GGTACC	1 cut(s)	512
AspLEI	GCGC	4 cut(s)	263, 536, 2763, 2844
AspS9I	GGNCC	1 cut(s)	2446
AsuC2I	CCSGG	1 cut(s)	2373
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	1029
AvaII	GGWCC	1 cut(s)	2446
BaeGI	GKGCMC	2 cut(s)	1504, 1792
BalI	TGGCCA	1 cut(s)	1392
BamHI	GGATCC	1 cut(s)	1459
BanI	GGYRCC	3 cut(s)	13, 260, 512
BanII	GRGCYC	2 cut(s)	1370, 2373
BbsI	GAAGAC	1 cut(s)	1364
Bbv12I	GWGCWC	2 cut(s)	1370, 1792
BbvI	GCAGC	4 cut(s)	1307, 1907, 2401, 2773
BciT130I	CCWGG	3 cut(s)	272, 1372, 1767
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	2373
BcoDI	GTCTC	3 cut(s)	331, 1346, 2826
BfaI	CTAG	5 cut(s)	1098, 1826, 1871, 2280, 2360
BfmI	CTRYAG	1 cut(s)	2308
BfoI	RGCGCY	3 cut(s)	264, 537, 2845
BfuAI	ACCTGC	1 cut(s)	1324
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	8 cut(s)	198, 283, 537, 1296, 1921, 2415, 2491, 2787
BlpI	GCTNAGC	1 cut(s)	1329
BlsI	GCNGC	8 cut(s)	199, 284, 538, 1297, 1922, 2416, 2492, 2788
Bme1390I	CCNGG	4 cut(s)	272, 1372, 1767, 2373
Bme18I	GGWCC	1 cut(s)	2446
BmeT110I	CYCGRG	1 cut(s)	1029
BmgT120I	GGNCC	1 cut(s)	2446
BmiI	GGNNCC	6 cut(s)	15, 262, 514, 1461, 2370, 2447
BmrFI	CCNGG	4 cut(s)	272, 1372, 1767, 2373
BmrI	ACTGGG	1 cut(s)	1802
BmsI	GCATC	5 cut(s)	381, 1982, 2142, 2426, 2772
BmuI	ACTGGG	1 cut(s)	1802
BpiI	GAAGAC	1 cut(s)	1364
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	1329
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	2373
BsaAI	YACGTR	1 cut(s)	1553
BsaHI	GRCGYC	2 cut(s)	252, 261
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 311, 341, 959, 989, 2502, 2532
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 289, 591
Bse118I	RCCGGY	2 cut(s)	302, 1189
Bse1I	ACTGG	3 cut(s)	1667, 1797, 2652
Bse3DI	GCAATG	1 cut(s)	2294
BseAI	TCCGGA	1 cut(s)	859
BseBI	CCWGG	3 cut(s)	272, 1372, 1767
BseDI	CCNNGG	1 cut(s)	537
BseLI	CCNNNNNNNGG	3 cut(s)	271, 289, 591
BseMI	GCAATG	1 cut(s)	2294
BseMII	CTCAG	4 cut(s)	1310, 1320, 1715, 2732
BseNI	ACTGG	3 cut(s)	1667, 1797, 2652
BseRI	GAGGAG	3 cut(s)	257, 454, 1217
BseSI	GKGCMC	2 cut(s)	1504, 1792
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	1307, 1907, 2401, 2773
BseYI	CCCAGC	3 cut(s)	899, 2114, 2212
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	9 cut(s)	5, 275, 282, 306, 584, 1392, 2472, 2490, 2865
BshNI	GGYRCC	3 cut(s)	13, 260, 512
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	1370, 1792
BsiHKCI	CYCGRG	1 cut(s)	1029
BsiSI	CCGG	7 cut(s)	183, 303, 307, 860, 1190, 2373, 2449
BslI	CCNNNNNNNGG	3 cut(s)	271, 289, 591
BsmAI	GTCTC	3 cut(s)	331, 1346, 2826
BsmBI	CGTCTC	2 cut(s)	331, 1346
BsmI	GAATGC	5 cut(s)	466, 679, 1081, 1381, 1684
BsnI	GGCC	9 cut(s)	5, 275, 282, 306, 584, 1392, 2472, 2490, 2865
BsoBI	CYCGRG	1 cut(s)	1029
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	4 cut(s)	1370, 1504, 1792, 2373
Bsp13I	TCCGGA	1 cut(s)	859
Bsp143I	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
Bsp1720I	GCTNAGC	1 cut(s)	1329
BspANI	GGCC	9 cut(s)	5, 275, 282, 306, 584, 1392, 2472, 2490, 2865
BspCNI	CTCAG	4 cut(s)	1311, 1321, 1714, 2733
BspEI	TCCGGA	1 cut(s)	859
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	2641
BspLI	GGNNCC	6 cut(s)	15, 262, 514, 1461, 2370, 2447
BspMI	ACCTGC	1 cut(s)	1324
BspPI	GGATC	3 cut(s)	1403, 1454, 1467
BspT104I	TTCGAA	1 cut(s)	426
BspT107I	GGYRCC	3 cut(s)	13, 260, 512
BsrDI	GCAATG	1 cut(s)	2294
BsrFI	RCCGGY	2 cut(s)	302, 1189
BsrI	ACTGG	3 cut(s)	1667, 1797, 2652
BssAI	RCCGGY	2 cut(s)	302, 1189
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
BssNI	GRCGYC	2 cut(s)	252, 261
Bst2UI	CCWGG	3 cut(s)	272, 1372, 1767
Bst4CI	ACNGT	5 cut(s)	883, 1363, 1812, 1952, 2400
Bst6I	CTCTTC	1 cut(s)	801
BstACI	GRCGYC	2 cut(s)	252, 261
BstAPI	GCANNNNNTGC	2 cut(s)	683, 1301
BstBAI	YACGTR	1 cut(s)	1553
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	3 cut(s)	1861, 2488, 2697
BstDEI	CTNAG	7 cut(s)	117, 1319, 1329, 1701, 2300, 2741, 2790
BstDSI	CCRYGG	1 cut(s)	537
BstEII	GGTNACC	1 cut(s)	1168
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	539
BstH2I	RGCGCY	3 cut(s)	264, 537, 2845
BstHHI	GCGC	4 cut(s)	263, 536, 2763, 2844
BstKTI	GATC	5 cut(s)	579, 1129, 1411, 1462, 1732
BstMAI	GTCTC	3 cut(s)	331, 1346, 2826
BstMBI	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
BstMCI	CGRYCG	1 cut(s)	307
BstNI	CCWGG	3 cut(s)	272, 1372, 1767
BstNSI	RCATGY	4 cut(s)	1000, 2106, 2212, 2263
BstPI	GGTNACC	1 cut(s)	1168
BstSCI	CCNGG	4 cut(s)	270, 1370, 1765, 2371
BstSFI	CTRYAG	1 cut(s)	2308
BstSLI	GKGCMC	2 cut(s)	1504, 1792
BstSNI	TACGTA	1 cut(s)	1553
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	4 cut(s)	1307, 1907, 2401, 2773
BstV2I	GAAGAC	1 cut(s)	1364
BstX2I	RGATCY	2 cut(s)	1408, 1459
BstXI	CCANNNNNNTGG	2 cut(s)	278, 1674
BstYI	RGATCY	2 cut(s)	1408, 1459
BstZI	CGGCCG	1 cut(s)	304
BsuRI	GGCC	9 cut(s)	5, 275, 282, 306, 584, 1392, 2472, 2490, 2865
BtgI	CCRYGG	1 cut(s)	537
BtsIMutI	CAGTG	4 cut(s)	1368, 1674, 1790, 2738
BveI	ACCTGC	1 cut(s)	1324
Cac8I	GCNNGC	3 cut(s)	1861, 2488, 2697
CaiI	CAGNNNCTG	1 cut(s)	2633
CciI	TCATGA	1 cut(s)	2641
CfoI	GCGC	4 cut(s)	263, 536, 2763, 2844
Cfr10I	RCCGGY	2 cut(s)	302, 1189
Cfr13I	GGNCC	1 cut(s)	2446
Cfr42I	CCGCGG	1 cut(s)	540
CseI	GACGC	2 cut(s)	260, 1811
CsiI	ACCWGGT	1 cut(s)	1765
Csp6I	GTAC	6 cut(s)	385, 478, 513, 691, 1015, 1432
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviQI	GTAC	6 cut(s)	385, 478, 513, 691, 1015, 1432
DdeI	CTNAG	7 cut(s)	117, 1319, 1329, 1701, 2300, 2741, 2790
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	5 cut(s)	578, 1128, 1410, 1461, 1731
DpnII	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
DraI	TTTAAA	2 cut(s)	547, 2244
EaeI	YGGCCR	4 cut(s)	280, 304, 1390, 2488
EagI	CGGCCG	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
EciI	GGCGGA	2 cut(s)	184, 2576
Ecl136II	GAGCTC	1 cut(s)	1368
EclXI	CGGCCG	1 cut(s)	304
Eco105I	TACGTA	1 cut(s)	1553
Eco147I	AGGCCT	2 cut(s)	275, 584
Eco24I	GRGCYC	2 cut(s)	1370, 2373
Eco32I	GATATC	1 cut(s)	2799
Eco47I	GGWCC	1 cut(s)	2446
Eco47III	AGCGCT	1 cut(s)	2843
Eco52I	CGGCCG	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	1368
Eco57I	CTGAAG	2 cut(s)	2286, 2459
Eco88I	CYCGRG	1 cut(s)	1029
Eco91I	GGTNACC	1 cut(s)	1168
EcoICRI	GAGCTC	1 cut(s)	1368
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	1168
EcoRI	GAATTC	3 cut(s)	766, 2004, 2091
EcoRII	CCWGG	3 cut(s)	270, 1370, 1765
EcoRV	GATATC	1 cut(s)	2799
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	2 cut(s)	1370, 2373
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
Esp3I	CGTCTC	2 cut(s)	331, 1346
FalI	AAGNNNNNCTT	2 cut(s)	1848, 1880
FauI	CCCGC	2 cut(s)	377, 422
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	1 cut(s)	2205
Fnu4HI	GCNGC	8 cut(s)	198, 283, 537, 1296, 1921, 2415, 2491, 2787
FriOI	GRGCYC	2 cut(s)	1370, 2373
Fsp4HI	GCNGC	8 cut(s)	198, 283, 537, 1296, 1921, 2415, 2491, 2787
FspBI	CTAG	5 cut(s)	1098, 1826, 1871, 2280, 2360
FspI	TGCGCA	1 cut(s)	2762
GlaI	GCGC	4 cut(s)	262, 535, 2762, 2843
GluI	GCNGC	8 cut(s)	198, 283, 537, 1296, 1921, 2415, 2491, 2787
GsaI	CCCAGC	3 cut(s)	903, 2118, 2216
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	3 cut(s)	264, 537, 2845
HaeIII	GGCC	9 cut(s)	5, 275, 282, 306, 584, 1392, 2472, 2490, 2865
HapII	CCGG	7 cut(s)	183, 303, 307, 860, 1190, 2373, 2449
HgaI	GACGC	2 cut(s)	260, 1811
HhaI	GCGC	4 cut(s)	263, 536, 2763, 2844
Hin1I	GRCGYC	2 cut(s)	252, 261
Hin6I	GCGC	4 cut(s)	261, 534, 2761, 2842
HinP1I	GCGC	4 cut(s)	261, 534, 2761, 2842
HindIII	AAGCTT	2 cut(s)	2238, 2693
HpaII	CCGG	7 cut(s)	183, 303, 307, 860, 1190, 2373, 2449
Hpy166II	GTNNAC	7 cut(s)	691, 1619, 1790, 1805, 2206, 2580, 2606
Hpy188I	TCNGA	9 cut(s)	409, 658, 790, 1210, 1250, 1610, 1704, 2478, 2612
Hpy188III	TCNNGA	7 cut(s)	483, 860, 1098, 1262, 1463, 1715, 2642
Hpy8I	GTNNAC	7 cut(s)	691, 1619, 1790, 1805, 2206, 2580, 2606
Hpy99I	CGWCG	1 cut(s)	874
HpyCH4III	ACNGT	5 cut(s)	883, 1363, 1812, 1952, 2400
HpyCH4IV	ACGT	2 cut(s)	872, 1552
HpyF3I	CTNAG	7 cut(s)	117, 1319, 1329, 1701, 2300, 2741, 2790
HpySE526I	ACGT	2 cut(s)	872, 1552
Hsp92I	GRCGYC	2 cut(s)	252, 261
HspAI	GCGC	4 cut(s)	261, 534, 2761, 2842
KasI	GGCGCC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	859
KpnI	GGTACC	1 cut(s)	516
Ksp22I	TGATCA	1 cut(s)	576
KspI	CCGCGG	1 cut(s)	540
Kzo9I	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
LmnI	GCTCC	3 cut(s)	1118, 1373, 2368
Lsp1109I	GCAGC	4 cut(s)	1307, 1907, 2401, 2773
LweI	GCATC	5 cut(s)	381, 1982, 2142, 2426, 2772
MabI	ACCWGGT	1 cut(s)	1765
MaeI	CTAG	5 cut(s)	1098, 1826, 1871, 2280, 2360
MaeII	ACGT	2 cut(s)	872, 1552
MaeIII	GTNAC	9 cut(s)	432, 877, 1168, 1185, 1238, 1694, 2105, 2537, 2777
MalI	GATC	5 cut(s)	578, 1128, 1410, 1461, 1731
MboI	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
MfeI	CAATTG	2 cut(s)	507, 2228
MflI	RGATCY	2 cut(s)	1408, 1459
MhlI	GDGCHC	4 cut(s)	1370, 1504, 1792, 2373
MlsI	TGGCCA	1 cut(s)	1392
MluNI	TGGCCA	1 cut(s)	1392
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	1214, 2564, 2754
MmeI	TCCRAC	4 cut(s)	161, 1188, 1548, 2477
Mox20I	TGGCCA	1 cut(s)	1392
Mph1103I	ATGCAT	1 cut(s)	679
MroI	TCCGGA	1 cut(s)	859
MroXI	GAANNNNTTC	2 cut(s)	449, 1079
MscI	TGGCCA	1 cut(s)	1392
MseI	TTAA	8 cut(s)	522, 546, 723, 1178, 1955, 2124, 2243, 2717
MslI	CAYNNNNRTG	3 cut(s)	380, 1901, 2013
Msp20I	TGGCCA	1 cut(s)	1392
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	7 cut(s)	183, 303, 307, 860, 1190, 2373, 2449
MspR9I	CCNGG	4 cut(s)	272, 1372, 1767, 2373
MssI	GTTTAAAC	1 cut(s)	547
MunI	CAATTG	2 cut(s)	507, 2228
Mva1269I	GAATGC	5 cut(s)	466, 679, 1081, 1381, 1684
MvaI	CCWGG	3 cut(s)	272, 1372, 1767
MvnI	CGCG	1 cut(s)	539
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	2373
NdeII	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
NlaIV	GGNNCC	6 cut(s)	15, 262, 514, 1461, 2370, 2447
NmuCI	GTSAC	4 cut(s)	877, 1168, 2537, 2777
NsbI	TGCGCA	1 cut(s)	2762
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	4 cut(s)	1000, 2106, 2212, 2263
NspV	TTCGAA	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	1029
PagI	TCATGA	1 cut(s)	2641
PaqCI	CACCTGC	1 cut(s)	1324
PceI	AGGCCT	2 cut(s)	275, 584
PciI	ACATGT	1 cut(s)	996
PctI	GAATGC	5 cut(s)	466, 679, 1081, 1381, 1684
PdmI	GAANNNNTTC	2 cut(s)	449, 1079
PfeI	GAWTC	7 cut(s)	410, 716, 931, 1534, 1571, 1758, 2630
PflFI	GACNNNGTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	1370
PkrI	GCNGC	8 cut(s)	199, 284, 538, 1297, 1922, 2416, 2492, 2788
PleI	GAGTC	3 cut(s)	1213, 2563, 2753
PluTI	GGCGCC	1 cut(s)	264
PmeI	GTTTAAAC	1 cut(s)	547
PpsI	GAGTC	3 cut(s)	1213, 2563, 2753
Ppu21I	YACGTR	1 cut(s)	1553
PscI	ACATGT	1 cut(s)	996
PsiI	TTATAA	2 cut(s)	1988, 2319
Psp124BI	GAGCTC	1 cut(s)	1370
Psp6I	CCWGG	3 cut(s)	270, 1370, 1765
PspEI	GGTNACC	1 cut(s)	1168
PspFI	CCCAGC	3 cut(s)	899, 2114, 2212
PspGI	CCWGG	3 cut(s)	270, 1370, 1765
PspN4I	GGNNCC	6 cut(s)	15, 262, 514, 1461, 2370, 2447
PspPI	GGNCC	1 cut(s)	2446
PspXI	VCTCGAGB	1 cut(s)	1029
PstNI	CAGNNNCTG	1 cut(s)	2633
PsuI	RGATCY	2 cut(s)	1408, 1459
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	6 cut(s)	386, 479, 514, 692, 1016, 1433
RsaNI	GTAC	6 cut(s)	385, 478, 513, 691, 1015, 1432
RseI	CAYNNNNRTG	3 cut(s)	380, 1901, 2013
SacI	GAGCTC	1 cut(s)	1370
SacII	CCGCGG	1 cut(s)	540
SaqAI	TTAA	8 cut(s)	522, 546, 723, 1178, 1955, 2124, 2243, 2717
SatI	GCNGC	8 cut(s)	198, 283, 537, 1296, 1921, 2415, 2491, 2787
Sau3AI	GATC	5 cut(s)	576, 1126, 1408, 1459, 1729
Sau96I	GGNCC	1 cut(s)	2446
SchI	GAGTC	3 cut(s)	1214, 2564, 2754
ScrFI	CCNGG	4 cut(s)	272, 1372, 1767, 2373
SduI	GDGCHC	4 cut(s)	1370, 1504, 1792, 2373
SexAI	ACCWGGT	1 cut(s)	1765
SfaNI	GCATC	5 cut(s)	381, 1982, 2142, 2426, 2772
SfcI	CTRYAG	1 cut(s)	2308
SfoI	GGCGCC	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	1029
Sfr303I	CCGCGG	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	426
SgrBI	CCGCGG	1 cut(s)	540
SinI	GGWCC	1 cut(s)	2446
SlaI	CTCGAG	1 cut(s)	1029
SmiMI	CAYNNNNRTG	3 cut(s)	380, 1901, 2013
SmlI	CTYRAG	2 cut(s)	481, 1029
SmoI	CTYRAG	2 cut(s)	481, 1029
SnaBI	TACGTA	1 cut(s)	1553
SseBI	AGGCCT	2 cut(s)	275, 584
SspDI	GGCGCC	1 cut(s)	260
SspI	AATATT	2 cut(s)	2141, 2673
SspMI	CTAG	5 cut(s)	1098, 1826, 1871, 2280, 2360
SstI	GAGCTC	1 cut(s)	1370
StuI	AGGCCT	2 cut(s)	275, 584
StyD4I	CCNGG	4 cut(s)	270, 1370, 1765, 2371
TaaI	ACNGT	5 cut(s)	883, 1363, 1812, 1952, 2400
TaiI	ACGT	2 cut(s)	875, 1555
TaqI	TCGA	8 cut(s)	297, 426, 770, 1030, 1625, 1728, 1738, 2402
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	4 cut(s)	200, 285, 539, 2493
TfiI	GAWTC	7 cut(s)	410, 716, 931, 1534, 1571, 1758, 2630
Tru1I	TTAA	8 cut(s)	522, 546, 723, 1178, 1955, 2124, 2243, 2717
Tru9I	TTAA	8 cut(s)	522, 546, 723, 1178, 1955, 2124, 2243, 2717
TscAI	CASTG	4 cut(s)	1368, 1674, 1797, 2745
TseFI	GTSAC	4 cut(s)	877, 1168, 2537, 2777
TseI	GCWGC	4 cut(s)	1295, 1920, 2414, 2786
Tsp45I	GTSAC	4 cut(s)	877, 1168, 2537, 2777
TspGWI	ACGGA	2 cut(s)	1037, 2831
TspRI	CASTG	4 cut(s)	1368, 1674, 1797, 2745
Tth111I	GACNNNGTC	1 cut(s)	356
VneI	GTGCAC	1 cut(s)	1788
VpaK11BI	GGWCC	1 cut(s)	2446
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	7 cut(s)	698, 766, 1511, 1662, 2004, 2091, 2283
XbaI	TCTAGA	1 cut(s)	1097
XceI	RCATGY	4 cut(s)	1000, 2106, 2212, 2263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1400
XhoI	CTCGAG	1 cut(s)	1029
XmiI	GTMKAC	1 cut(s)	2205
XmnI	GAANNNNTTC	2 cut(s)	449, 1079
XspI	CTAG	5 cut(s)	1098, 1826, 1871, 2280, 2360
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.