Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Reverse (-)

22238316 .. 22241249

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2934 bp

ATGGCTTCTGTGGCAGTGGCACCACCACCACTCTCATGCCATTCTCGGCCCACACCTAAAGTCAAACACTTCCTCCGCCCAATCTTCCCTCCAAAACCAAAACCACTTTCTTCTCTCTCCGCCGCACAGACAACCGCCCACCACCACCACCACCAAACAGACTCTCTCACTTTCCTCCAAGACGTCAACAATCTCTGTGACGCCGGAAACCTCTCGGAGGCTCTGACCCTTCTTCAAGCACACTCTCACGATGCAATTTCCAGTTCACAGCAAGGGAAAGACGCCATGGGAGCCTTGTTACAGGCCTGCGGGCGCCGCAAGGACGTTGAAACCGGACGCAAAATCCACAACTTGGTCTCCGCGTCGACCCTTTTCAGCAATGACTTTGTTCTCAACACACGCATCATTACCATGTATGCAATGTGCGGTTCTCCTTTGGATTCCCGCTCAGTTTTCGACGGGCTGAAGAGGAAGAACTTGTTCCAGTGGAATGCACTTGTTAGTGGGTATGCAAGAAACGAGCTTTTTGTTGATGCCATTGATGTGTTTGTTGAGTTGATCAGCGTTACGGAGTTTAAACCCGATAATTTTACTTTTCCCTGTGTTTTTAAGGCCTGTGGGGGGATTTCAGACGTGGGTTTGGGACAGGTTGTTCATGGGATGGCTGAGAAGATGGGATTGATTTCGGATGTGTTTGTGGGCAATGCGTTGATTGCAATGTATGGGAAATGCGGGTCGGTTGAGGATGCAGCTAAAGTGTTCGAGATAATGCCTGAGAAGAATTTGGTTTCTTGGAATTCGATGATATGCGGGTTCTCGGAGAATGGATTGGATCATGAGAGTTATAGTTTGTTGGGGAAGATTTTAGAGGGTGATGAAGCTCTAGTACCGGATGTTGCTACGTTGGTGACTGTATTGCCTTTGTGTGCTGGGAACGGAGAAGTAATTATGGGGATGATGATTCATAGTTTGGCAGTGAAATTGGGGCTGAACCAGGAATTAATGGTGAATAATGCGTTGGCGGACATGTACTCGAAATGTGGGTACTCAGTTGAAGCTCAAGTCTTGTTTGACAAGAATGACAAGAAAAATGTGGTTTCTTGGAATTCCGTCATAGGAGGTTTTTCTAGAGAAGGGGATGTATGTGGCACGTTTGGTCTTTTGCGAAAAATGCAGATGGAAGGGGAGAAAGTGAAGGTGAATGAGGTCACCATACTGAATGTGTTACCGGCTTGTTTGGAGGAGTCGGAACTTTTGAGCTTGAAAGAACTTCATGCTTATTCATTCAGACATGGGTTTATATATGATGAACTGGTAGCCAATGCTTTTGTTGCAGCGTACACGAAATGTGGGTCACTAAATTCCGCTGAACTGGTTTTTCATGGTATTGAGACGAAGACAGTGGGCTCCTGGAACGCGGTTATTGGTGGCTGTGCCCAAAATGGAGATCCATACAAAGCTTTAGATTTGTACCTTCAAATGAAATATTCAGGCTTGGATCCTGACGAGTTTAGCATCGGTAGCCTCCTTTTAGCTTGTGCCCACCTGAAACATCTTCAACATGGGAGAGAGATTCATGGATTTGTGCTACGTAATGGGTTAGAAGTGGATTCATTCATTGGTATTTCATTACAGTCCCTTTACATCCATTGTGGTAAATTATCATCTGCAAGAGTATTATTTGATAGGACAGAATCGAAAATTAGAGTGTCTTGGAATGCAATGATCGCCGGTTACACTCAGGTTGGACTTCCTGACAAAGCCCTTGATCTCTTTCGCCAAATGCTGTCTGATGAAATCCTACCTTGTGCAATTGCAACAATGAGCATGTTTGGGGCTTGTTCACAGCTGTCAGCTTTGCGTTCAGGAAAAGAGCTGCATTGTTTCGCTTTGAAAGCTTGCCTCACAGAAGACCTTTTTGTTGGTTGCTCTCTCGTAGATATGTATGCAAAAAGTGGCTGCATCGAACAATCTCATAGAGTTTTTGACCGGTTAACCAAGAAGGATGTGGCTTCATGGAACGTTATAATTGCAGGATACGGAATTCATGGACATGGAAACAAGGCTTTAGAGCTCTTCAGAGAAATGCTAAGTTTTGGCCAGAAGGCTGATGGCTTTACGTTTATCGGAATTTTAACTGCATGTAGCCATGCTGGGTTGGTTAAGGAGGGGATAGAATATTTCAACCAGATGCAAAGCTTGTACAAAATAGAGCCGAAACTAGAGCATTATGCATGTGTGGTGGACATGCTTGGCCGGGCTGGCCGGTTGGAGGAAGCTTTAAACCTCATACATGAGATGCCGGAGGAGCCAGATACTAGAATGTGGAGCTCATTGCTTAGTTCCTGTAGGAGTCATAATAATTTGGACATGGGGCAGAAAATCGCTGAAAAATTGTTAGACGTAGAGCCTGAAAAGGCGGAAAATTACGTGCTGCTGTCTAACTTGTATGCCGCATCAGGTAAATGGGATAGTGTGAGACACGTGCGGCGAAAGATGAAGGTGACTGGCCTTCAGAAAGATGCCGGACGCAGCTGGATTGAAGTCGGAGGGCAAGTTTACAGCTTTGTTGTTGGCGACACATCTCTGCCAGAGTCTGGAGAGATCAAGAAAATGTGGGCAAGGTTAGAGGAAAAGATAAGTGAATTCGGATACAAACCCGACACAGGCTGTGTGCTTCATGAACTAGGAGAAGACGAGAAGGTTGAAATACTACGGGGACATAGCGAGAAGCTTGCGATTTCATTCGGTTTGTTGAAGACGAGTAGAAGTAGAACAACATTGAGAGTCTGCAAAAATCTGCGGATTTGTGTGGATTGCCATAATGCAGCTAAGCTGATATCGAAAGTTGTTGAAAGGGAGATTATTATGAGAGATAATAAGCGCTTCCATCATTTCAAACATGGCCTTTGTTCTTGTGGAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

978

Amino Acids

107.89

Weight (kDa)

6.38

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	467 - 515	1.3e-08	PPR repeat family
PPR	PF01535	470 - 499	1.9e-06	PPR repeat
PPR	PF01535	570 - 598	6.2e-08	PPR repeat
PPR_2	PF13041	570 - 613	7.3e-06	PPR repeat family
PPR_2	PF13041	668 - 716	2.8e-09	PPR repeat family
PPR	PF01535	672 - 700	2.3e-06	PPR repeat
E_motif	PF20431	786 - 848	5.6e-17	E motif
DYW_deaminase	PF14432	884 - 977	8.5e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2027
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	19, 312
AccB7I	CCANNNNNTGG	2 cut(s)	352, 2597
AccBSI	CCGCTC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	2 cut(s)	362, 1418
AclI	AACGTT	1 cut(s)	2022
AclWI	GGATC	4 cut(s)	840, 1442, 1493, 1506
AcoI	YGGCCR	3 cut(s)	2098, 2254, 2263
AcsI	RAATTY	7 cut(s)	781, 796, 1105, 1360, 2043, 2130, 2645
AcuI	CTGAAG	3 cut(s)	485, 2062, 2498
AcvI	CACGTG	1 cut(s)	2485
AcyI	GRCGYC	4 cut(s)	183, 201, 282, 313
AfaI	GTAC	6 cut(s)	888, 1031, 1046, 1340, 1472, 2204
AfeI	AGCGCT	1 cut(s)	2885
AfiI	CCNNNNNNNGG	6 cut(s)	217, 352, 621, 2272, 2597, 2666
AflIII	ACRYGT	2 cut(s)	1026, 2482
AgeI	ACCGGT	1 cut(s)	1989
AjiI	CACGTC	1 cut(s)	634
AjnI	CCWGG	2 cut(s)	993, 1409
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 1001, 1033
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
Alw21I	GWGCWC	2 cut(s)	2076, 2333
Alw26I	GTCTC	3 cut(s)	361, 1385, 2473
AlwI	GGATC	4 cut(s)	840, 1442, 1493, 1506
AlwNI	CAGNNNCTG	1 cut(s)	2597
Aor51HI	AGCGCT	1 cut(s)	2885
AoxI	GGCC	8 cut(s)	47, 303, 612, 2098, 2254, 2263, 2509, 2905
ApeKI	GCWGC	7 cut(s)	749, 1334, 1876, 1959, 2434, 2532, 2828
ApoI	RAATTY	7 cut(s)	781, 796, 1105, 1360, 2043, 2130, 2645
ArsI	GACNNNNNNTTYG	2 cut(s)	1337, 1369
AseI	ATTAAT	1 cut(s)	1001
AsiGI	ACCGGT	1 cut(s)	1989
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	315, 2886
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	2258
AsuHPI	GGTGA	6 cut(s)	884, 919, 1018, 1201, 1210, 2515
BaeGI	GKGCMC	2 cut(s)	1438, 1543
BalI	TGGCCA	1 cut(s)	2100
BamHI	GGATCC	1 cut(s)	1498
BanI	GGYRCC	2 cut(s)	19, 312
BanII	GRGCYC	3 cut(s)	1409, 2076, 2333
BarI	GAAGNNNNNNTAC	2 cut(s)	870, 902
BbrPI	CACGTG	1 cut(s)	2485
BbsI	GAAGAC	4 cut(s)	1403, 1917, 2700, 2765
Bbv12I	GWGCWC	2 cut(s)	2076, 2333
BbvI	GCAGC	7 cut(s)	761, 1346, 1863, 1946, 2421, 2544, 2840
BccI	CCATC	5 cut(s)	655, 667, 1171, 2105, 2898
BcgI	CGANNNNNNTGC	2 cut(s)	2717, 2751
BciT130I	CCWGG	2 cut(s)	995, 1411
BciVI	GTATCC	2 cut(s)	2030, 2645
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	2258
BcoDI	GTCTC	3 cut(s)	361, 1385, 2473
BfaI	CTAG	5 cut(s)	884, 1128, 2222, 2319, 2687
BfmI	CTRYAG	1 cut(s)	2347
BfoI	RGCGCY	2 cut(s)	316, 2887
BfuI	GTATCC	2 cut(s)	2030, 2645
BglI	GCCNNNNNGGC	1 cut(s)	2262
BlpI	GCTNAGC	1 cut(s)	2832
Bme1390I	CCNGG	3 cut(s)	995, 1411, 2258
BmgBI	CACGTC	1 cut(s)	634
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	6 cut(s)	21, 292, 314, 1408, 1500, 2310
BmrFI	CCNGG	3 cut(s)	995, 1411, 2258
BpiI	GAAGAC	4 cut(s)	1403, 1917, 2700, 2765
BpmI	CTGGAG	1 cut(s)	2619
Bpu1102I	GCTNAGC	1 cut(s)	2832
BpuEI	CTTGAG	1 cut(s)	1044
BpuMI	CCSGG	1 cut(s)	2258
BsaAI	YACGTR	3 cut(s)	1592, 2431, 2485
BsaHI	GRCGYC	4 cut(s)	183, 201, 282, 313
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	3 cut(s)	332, 889, 1989
BsaXI	ACNNNNNCTCC	6 cut(s)	57, 87, 341, 371, 2541, 2571
Bsc4I	CCNNNNNNNGG	6 cut(s)	217, 352, 621, 2272, 2597, 2666
Bse118I	RCCGGY	4 cut(s)	1228, 1730, 1989, 2265
Bse1I	ACTGG	5 cut(s)	261, 484, 1317, 1377, 2512
Bse3DI	GCAATG	6 cut(s)	385, 426, 709, 723, 1728, 2333
BseBI	CCWGG	2 cut(s)	995, 1411
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	8 cut(s)	666, 694, 751, 898, 960, 1144, 1644, 2011
BseLI	CCNNNNNNNGG	6 cut(s)	217, 352, 621, 2272, 2597, 2666
BseMI	GCAATG	6 cut(s)	385, 426, 709, 723, 1728, 2333
BseMII	CTCAG	5 cut(s)	462, 657, 765, 1062, 1754
BseNI	ACTGG	5 cut(s)	261, 484, 1317, 1377, 2512
BseRI	GAGGAG	2 cut(s)	1256, 2321
BseSI	GKGCMC	2 cut(s)	1438, 1543
BseXI	GCAGC	7 cut(s)	761, 1346, 1863, 1946, 2421, 2544, 2840
BseYI	CCCAGC	2 cut(s)	929, 2153
Bsh1236I	CGCG	2 cut(s)	362, 1418
BshFI	GGCC	8 cut(s)	49, 305, 614, 2100, 2256, 2265, 2511, 2907
BshNI	GGYRCC	2 cut(s)	19, 312
BshTI	ACCGGT	1 cut(s)	1989
BsiHKAI	GWGCWC	2 cut(s)	2076, 2333
BslFI	GGGAC	3 cut(s)	657, 1621, 2733
BslI	CCNNNNNNNGG	6 cut(s)	217, 352, 621, 2272, 2597, 2666
BsmAI	GTCTC	3 cut(s)	361, 1385, 2473
BsmBI	CGTCTC	1 cut(s)	1385
BsmFI	GGGAC	3 cut(s)	657, 1621, 2733
BsmI	GAATGC	2 cut(s)	496, 1723
BsnI	GGCC	8 cut(s)	49, 305, 614, 2100, 2256, 2265, 2511, 2907
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	5 cut(s)	1409, 1438, 1543, 2076, 2333
Bsp1407I	TGTACA	1 cut(s)	2202
Bsp143I	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
Bsp1720I	GCTNAGC	1 cut(s)	2832
Bsp19I	CCATGG	1 cut(s)	285
BspANI	GGCC	8 cut(s)	49, 305, 614, 2100, 2256, 2265, 2511, 2907
BspCNI	CTCAG	5 cut(s)	461, 658, 766, 1061, 1753
BspFNI	CGCG	2 cut(s)	362, 1418
BspHI	TCATGA	2 cut(s)	835, 2680
BspLI	GGNNCC	6 cut(s)	21, 292, 314, 1408, 1500, 2310
BspPI	GGATC	4 cut(s)	840, 1442, 1493, 1506
BspQI	GCTCTTC	1 cut(s)	2081
BspT107I	GGYRCC	2 cut(s)	19, 312
BspTNI	GGTCTC	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	447
BsrDI	GCAATG	6 cut(s)	385, 426, 709, 723, 1728, 2333
BsrFI	RCCGGY	4 cut(s)	1228, 1730, 1989, 2265
BsrGI	TGTACA	1 cut(s)	2202
BsrI	ACTGG	5 cut(s)	261, 484, 1317, 1377, 2512
BssAI	RCCGGY	4 cut(s)	1228, 1730, 1989, 2265
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
BssNI	GRCGYC	4 cut(s)	183, 201, 282, 313
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	995, 1411
Bst4CI	ACNGT	3 cut(s)	913, 1402, 1635
Bst6I	CTCTTC	2 cut(s)	461, 2081
BstACI	GRCGYC	4 cut(s)	183, 201, 282, 313
BstAUI	TGTACA	1 cut(s)	2202
BstBAI	YACGTR	3 cut(s)	1592, 2431, 2485
BstC8I	GCNNGC	5 cut(s)	307, 311, 1900, 2263, 2736
BstDEI	CTNAG	8 cut(s)	448, 666, 774, 1048, 1740, 2090, 2339, 2832
BstDSI	CCRYGG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	1207
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	8 cut(s)	666, 694, 751, 898, 960, 1144, 1644, 2011
BstFNI	CGCG	2 cut(s)	362, 1418
BstH2I	RGCGCY	2 cut(s)	316, 2887
BstHHI	GCGC	2 cut(s)	315, 2886
BstKTI	GATC	7 cut(s)	561, 835, 1450, 1501, 1728, 1771, 2607
BstMAI	GTCTC	3 cut(s)	361, 1385, 2473
BstMBI	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
BstNI	CCWGG	2 cut(s)	995, 1411
BstNSI	RCATGY	5 cut(s)	1030, 1831, 2145, 2238, 2251
BstPI	GGTNACC	1 cut(s)	1207
BstSCI	CCNGG	3 cut(s)	993, 1409, 2256
BstSFI	CTRYAG	1 cut(s)	2347
BstSLI	GKGCMC	2 cut(s)	1438, 1543
BstSNI	TACGTA	1 cut(s)	1592
BstUI	CGCG	2 cut(s)	362, 1418
BstV1I	GCAGC	7 cut(s)	761, 1346, 1863, 1946, 2421, 2544, 2840
BstV2I	GAAGAC	4 cut(s)	1403, 1917, 2700, 2765
BstX2I	RGATCY	2 cut(s)	1447, 1498
BstYI	RGATCY	2 cut(s)	1447, 1498
BsuI	GTATCC	2 cut(s)	2030, 2645
BsuRI	GGCC	8 cut(s)	49, 305, 614, 2100, 2256, 2265, 2511, 2907
BtgI	CCRYGG	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	634
BtsCI	GGATG	8 cut(s)	666, 694, 751, 898, 960, 1144, 1644, 2011
BtsI	GCAGTG	2 cut(s)	21, 981
BtsIMutI	CAGTG	4 cut(s)	21, 491, 981, 1407
Cac8I	GCNNGC	5 cut(s)	307, 311, 1900, 2263, 2736
CaiI	CAGNNNCTG	1 cut(s)	2597
CciI	TCATGA	2 cut(s)	835, 2680
CfoI	GCGC	2 cut(s)	315, 2886
Cfr10I	RCCGGY	4 cut(s)	1228, 1730, 1989, 2265
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	5 cut(s)	209, 290, 345, 351, 2538
Csp6I	GTAC	6 cut(s)	887, 1030, 1045, 1339, 1471, 2203
CspAI	ACCGGT	1 cut(s)	1989
CviQI	GTAC	6 cut(s)	887, 1030, 1045, 1339, 1471, 2203
DdeI	CTNAG	8 cut(s)	448, 666, 774, 1048, 1740, 2090, 2339, 2832
DinI	GGCGCC	1 cut(s)	314
DpnI	GATC	7 cut(s)	560, 834, 1449, 1500, 1727, 1770, 2606
DpnII	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
DraI	TTTAAA	2 cut(s)	577, 2283
EaeI	YGGCCR	3 cut(s)	2098, 2254, 2263
Eam1104I	CTCTTC	2 cut(s)	461, 2081
EarI	CTCTTC	2 cut(s)	461, 2081
EciI	GGCGGA	4 cut(s)	65, 109, 1037, 2435
Ecl136II	GAGCTC	2 cut(s)	2074, 2331
Eco105I	TACGTA	1 cut(s)	1592
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	2 cut(s)	305, 614
Eco24I	GRGCYC	3 cut(s)	1409, 2076, 2333
Eco31I	GGTCTC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	2841
Eco47III	AGCGCT	1 cut(s)	2885
Eco53kI	GAGCTC	2 cut(s)	2074, 2331
Eco57I	CTGAAG	3 cut(s)	485, 2062, 2498
Eco72I	CACGTG	1 cut(s)	2485
Eco91I	GGTNACC	1 cut(s)	1207
EcoICRI	GAGCTC	2 cut(s)	2074, 2331
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoO65I	GGTNACC	1 cut(s)	1207
EcoRI	GAATTC	4 cut(s)	796, 1105, 2043, 2645
EcoRII	CCWGG	2 cut(s)	993, 1409
EcoRV	GATATC	1 cut(s)	2841
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	2236
EcoT38I	GRGCYC	3 cut(s)	1409, 2076, 2333
EgeI	GGCGCC	1 cut(s)	314
EheI	GGCGCC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	1385
FaqI	GGGAC	3 cut(s)	657, 1621, 2733
FauI	CCCGC	4 cut(s)	302, 452, 725, 803
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	365
FokI	GGATG	8 cut(s)	673, 701, 758, 905, 967, 1151, 1631, 2018
FriOI	GRGCYC	3 cut(s)	1409, 2076, 2333
FspBI	CTAG	5 cut(s)	884, 1128, 2222, 2319, 2687
GlaI	GCGC	2 cut(s)	314, 2885
GsaI	CCCAGC	2 cut(s)	933, 2157
GsuI	CTGGAG	1 cut(s)	2619
HaeII	RGCGCY	2 cut(s)	316, 2887
HaeIII	GGCC	8 cut(s)	49, 305, 614, 2100, 2256, 2265, 2511, 2907
HgaI	GACGC	5 cut(s)	209, 290, 345, 351, 2538
HhaI	GCGC	2 cut(s)	315, 2886
Hin1I	GRCGYC	4 cut(s)	183, 201, 282, 313
Hin6I	GCGC	2 cut(s)	313, 2884
HinP1I	GCGC	2 cut(s)	313, 2884
HincII	GTYRAC	3 cut(s)	187, 366, 1995
HindII	GTYRAC	3 cut(s)	187, 366, 1995
HindIII	AAGCTT	5 cut(s)	1458, 1896, 2197, 2277, 2732
HpaI	GTTAAC	1 cut(s)	1995
HphI	GGTGA	6 cut(s)	884, 919, 1018, 1201, 1210, 2515
Hpy166II	GTNNAC	8 cut(s)	187, 266, 366, 1341, 1844, 1995, 2245, 2560
Hpy8I	GTNNAC	8 cut(s)	187, 266, 366, 1341, 1844, 1995, 2245, 2560
Hpy99I	CGWCG	2 cut(s)	367, 461
HpyCH4III	ACNGT	3 cut(s)	913, 1402, 1635
HpyF3I	CTNAG	8 cut(s)	448, 666, 774, 1048, 1740, 2090, 2339, 2832
Hsp92I	GRCGYC	4 cut(s)	183, 201, 282, 313
HspAI	GCGC	2 cut(s)	313, 2884
KasI	GGCGCC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	558
KspAI	GTTAAC	1 cut(s)	1995
Kzo9I	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
LguI	GCTCTTC	1 cut(s)	2081
LmnI	GCTCC	4 cut(s)	290, 1412, 2308, 2328
Lsp1109I	GCAGC	7 cut(s)	761, 1346, 1863, 1946, 2421, 2544, 2840
MaeI	CTAG	5 cut(s)	884, 1128, 2222, 2319, 2687
MaeIII	GTNAC	9 cut(s)	197, 297, 565, 907, 1207, 1224, 1353, 1733, 2503
MalI	GATC	7 cut(s)	560, 834, 1449, 1500, 1727, 1770, 2606
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
MfeI	CAATTG	1 cut(s)	1812
MflI	RGATCY	2 cut(s)	1447, 1498
MhlI	GDGCHC	5 cut(s)	1409, 1438, 1543, 2076, 2333
MlsI	TGGCCA	1 cut(s)	2100
MluNI	TGGCCA	1 cut(s)	2100
Mly113I	GGCGCC	1 cut(s)	313
MlyI	GAGTC	5 cut(s)	155, 1253, 2362, 2603, 2796
MmeI	TCCRAC	4 cut(s)	1227, 1726, 2250, 2527
Mox20I	TGGCCA	1 cut(s)	2100
Mph1103I	ATGCAT	1 cut(s)	2236
MroXI	GAANNNNTTC	1 cut(s)	479
MscI	TGGCCA	1 cut(s)	2100
MseI	TTAA	7 cut(s)	576, 609, 1001, 1994, 2135, 2163, 2282
MslI	CAYNNNNRTG	4 cut(s)	34, 410, 542, 2052
Msp20I	TGGCCA	1 cut(s)	2100
MspA1I	CMGCKG	3 cut(s)	1367, 1849, 2535
MspR9I	CCNGG	3 cut(s)	995, 1411, 2258
MssI	GTTTAAAC	1 cut(s)	577
MunI	CAATTG	1 cut(s)	1812
Mva1269I	GAATGC	2 cut(s)	496, 1723
MvaI	CCWGG	2 cut(s)	995, 1411
MvnI	CGCG	2 cut(s)	362, 1418
NarI	GGCGCC	1 cut(s)	313
NciI	CCSGG	1 cut(s)	2258
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
NlaIV	GGNNCC	6 cut(s)	21, 292, 314, 1408, 1500, 2310
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	5 cut(s)	197, 907, 1207, 1353, 2503
NsiI	ATGCAT	1 cut(s)	2236
NspI	RCATGY	5 cut(s)	1030, 1831, 2145, 2238, 2251
PagI	TCATGA	2 cut(s)	835, 2680
PceI	AGGCCT	2 cut(s)	305, 614
PciI	ACATGT	1 cut(s)	1026
PciSI	GCTCTTC	1 cut(s)	2081
PctI	GAATGC	2 cut(s)	496, 1723
PdmI	GAANNNNTTC	1 cut(s)	479
PfeI	GAWTC	5 cut(s)	440, 961, 1573, 1610, 1694
PflMI	CCANNNNNTGG	2 cut(s)	352, 2597
PfoI	TCCNGGA	1 cut(s)	1409
PinAI	ACCGGT	1 cut(s)	1989
PleI	GAGTC	5 cut(s)	155, 1252, 2361, 2602, 2795
PluTI	GGCGCC	1 cut(s)	316
PmaCI	CACGTG	1 cut(s)	2485
PmeI	GTTTAAAC	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	2485
PpsI	GAGTC	5 cut(s)	155, 1252, 2361, 2602, 2795
Ppu21I	YACGTR	3 cut(s)	1592, 2431, 2485
PscI	ACATGT	1 cut(s)	1026
PshBI	ATTAAT	1 cut(s)	1001
PsiI	TTATAA	1 cut(s)	2027
Psp124BI	GAGCTC	2 cut(s)	2076, 2333
Psp1406I	AACGTT	1 cut(s)	2022
Psp6I	CCWGG	2 cut(s)	993, 1409
PspCI	CACGTG	1 cut(s)	2485
PspEI	GGTNACC	1 cut(s)	1207
PspFI	CCCAGC	2 cut(s)	929, 2153
PspGI	CCWGG	2 cut(s)	993, 1409
PspN4I	GGNNCC	6 cut(s)	21, 292, 314, 1408, 1500, 2310
PspPI	GGNCC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	2597
PsuI	RGATCY	2 cut(s)	1447, 1498
PvuII	CAGCTG	2 cut(s)	1849, 2535
RsaI	GTAC	6 cut(s)	888, 1031, 1046, 1340, 1472, 2204
RsaNI	GTAC	6 cut(s)	887, 1030, 1045, 1339, 1471, 2203
RseI	CAYNNNNRTG	4 cut(s)	34, 410, 542, 2052
SacI	GAGCTC	2 cut(s)	2076, 2333
SalI	GTCGAC	1 cut(s)	364
SapI	GCTCTTC	1 cut(s)	2081
SaqAI	TTAA	7 cut(s)	576, 609, 1001, 1994, 2135, 2163, 2282
Sau3AI	GATC	7 cut(s)	558, 832, 1447, 1498, 1725, 1768, 2604
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	5 cut(s)	155, 1253, 2362, 2603, 2796
ScrFI	CCNGG	3 cut(s)	995, 1411, 2258
SduI	GDGCHC	5 cut(s)	1409, 1438, 1543, 2076, 2333
SfcI	CTRYAG	1 cut(s)	2347
SfiI	GGCCNNNNNGGCC	1 cut(s)	2262
SfoI	GGCGCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	4 cut(s)	34, 410, 542, 2052
SmlI	CTYRAG	1 cut(s)	1059
SmoI	CTYRAG	1 cut(s)	1059
SnaBI	TACGTA	1 cut(s)	1592
SseBI	AGGCCT	2 cut(s)	305, 614
SspDI	GGCGCC	1 cut(s)	312
SspI	AATATT	2 cut(s)	1487, 2180
SspMI	CTAG	5 cut(s)	884, 1128, 2222, 2319, 2687
SstI	GAGCTC	2 cut(s)	2076, 2333
StuI	AGGCCT	2 cut(s)	305, 614
StyD4I	CCNGG	3 cut(s)	993, 1409, 2256
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	913, 1402, 1635
TaqI	TCGA	8 cut(s)	365, 456, 762, 800, 1034, 1697, 1965, 2843
TatI	WGTACW	2 cut(s)	1029, 2202
TauI	GCSGC	4 cut(s)	125, 318, 2456, 2491
TfiI	GAWTC	5 cut(s)	440, 961, 1573, 1610, 1694
Tru1I	TTAA	7 cut(s)	576, 609, 1001, 1994, 2135, 2163, 2282
Tru9I	TTAA	7 cut(s)	576, 609, 1001, 1994, 2135, 2163, 2282
TscAI	CASTG	4 cut(s)	21, 491, 981, 1407
TseFI	GTSAC	5 cut(s)	197, 907, 1207, 1353, 2503
TseI	GCWGC	7 cut(s)	749, 1334, 1876, 1959, 2434, 2532, 2828
Tsp45I	GTSAC	5 cut(s)	197, 907, 1207, 1353, 2503
TspGWI	ACGGA	4 cut(s)	584, 951, 1099, 2055
TspRI	CASTG	4 cut(s)	21, 491, 981, 1407
Van91I	CCANNNNNTGG	2 cut(s)	352, 2597
VspI	ATTAAT	1 cut(s)	1001
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	7 cut(s)	781, 796, 1105, 1360, 2043, 2130, 2645
XbaI	TCTAGA	1 cut(s)	1127
XceI	RCATGY	5 cut(s)	1030, 1831, 2145, 2238, 2251
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2005, 2108
XmiI	GTMKAC	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	5 cut(s)	884, 1128, 2222, 2319, 2687
ZraI	GACGTC	1 cut(s)	184
Zsp2I	ATGCAT	1 cut(s)	2236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.