Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007533.1

Orthogroup ID

OG0016120

Physical Location & Seq

Genomic Coordinates Reverse (-)

18992 .. 21868

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007533.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

atggcctctgtggcaccaccaccactcccattctcatatcatcaccatcccctgcttcccaaaccaaaccccaaacactccattttcacaccaaaatcttcactttctttctctcccgctcaaaccaaaaccaactcactccaagacctcaaccacctctgcaactccggcaacctctccgccgccctcaccctcctccaaaccaatgccttccccacctcacagcacctcaaagacgccatcggcgccctcctccaggcctgtggccgccacaaggacatcgaaaccggccgcaagctccaccacctcgtctcccaatccacccacttcacccacgacttcgtcctcaacacccgcatcatcaccatgtactcaatgtgcaactctccttccgattcccgcctcgttttcgaagggttacagagaaagaacctgttccagtggaatgctctggttagtgggtactcaagaaacgagctttatgaggaagcaattgataccttcattaagttgataagcgccgcggagtttaaacccgataatttcacaatgccttgtgtgatcaaggcgtgtggtgggcttttggatgtgggtttggggcagggggttcatgggatggttgtgaagatggggctggtttcggatgtgtttgtggggaatgcattgattgcggtgtatgggaaatttgggtttgttgaggattcagttaaggtgtttgagaaaatgagtgcgaggaacttggtgtcttggaattcgatgattagggggttttcggagaatgggatgtgtgaagagagttgttggttgttggtgaggcttttggagggtgaggaagggtttgttccggatgaggcgacgttggtgactgtattacctgtttgtgctgggaaaggggatgttagaatggggatggagattcatggtttggcggtgaagttggggctggataaggagttgatgttgagtaatgccttgatggacatgtatttgaaatgtgggtacttaacggaagctcgagttttgtttgagagaaatgagagtaagaatgtggtgtcttggaatgctttcataggaggttattctagacaaggggatgttagtggagcatttgatcttttgcgaaaaatgcagatgaaggagaaggtgaatgaggtcaccgtcttaaatgtgttaccggcttgtttagaggagtcggaacttttgagcttgaaggagcttcatggtcactcattcagacatgggttttatgatgatgaactggtggccaatgcttatgttgcagcctattcgaaatgtgggtcgctgagttctgccgagcaggtgttttatggtattgagacgaagacagtgagctcctggaatgcagttattggtggccatgcccagaatggagatcctaaaaaggctttagatttgtaccttcaaatgaaacaatcaggtttggatcctgacaagtttagcattggtagcctccttttagcttgtgcccacctcaaatttcttcaatatggtaaagagattcatgggtttgtgctacgtaatgggttagagttggattcatttattggtatttcattactatccttttacatccaatgtggtaaactatcgacggcaagagcattatttgataggatggaagataaaattccagtgtcatggaatgcaataatctctggttactctcagattggacttcctgatgaagccctcgatctctttcgactaatgctgtctaatggaatcctacctggtgaaatagccacaatgagtgcactgggggcttgttcacaactgtcagctctgcgtctagggaaagaactgcattgttttgctttgaaagcacgccttacactagacctgtttgttggttgttctctcatagatatgtatgcaaaaagtggctgcatagaacaatctcacagggcatttgacagtttaacaaagaaagatgtggcatcatggaatgttataattgcagggtatggaattcatggacatggaaacaaggctttggagctatttggagaaatgataagtttggggcataagcctgatgtctttacatttcttggaattctaactgcatgtaaccatgctgggcttgttaaaaatgggctaaaatatttcaaagagatgcaaagattatatggaatagagccgaagttagagcattatgcatgtgtagtagacatgctgggtagggctggtcaattggaggaagctttaaacctgatagataacatgcctgaagaaccagatactagaatttggagttcattgcttagttcctgtaggaattataatgatttgggaataggacagaaaattgctgaaaaactactagaattggagcccggaaaggcagagaattatgtcctactgtcgaacttatatgctgcatcagggaattgggatgatgtgagatgggtccggcaaaggatgaaggagattggccttcagaaagaagctggccgcagttggattgaaattggagggcaagtgtataactttgttgctggtgacaattctctgccagagtcggcggagattaggaagatgtggacaaaagtagaggaaagaataagtaaactcggatatacacccaacacagattctgtgcttcatgaagtggactatacagagaagattgaaatattgagggggcatagtgaaaagcttgcaatttcatttggattgttaaagatgaaaaaaggtgctacactgagagtctgtaaaaatctgcgcatctgcattgattgtcacaatgctgctaagttgatatcaaaggctgttgaaacggagataattgtgagagacaacaagcgcttccatcatttcaaagatggcctctgttcttgtggggattattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

958

Amino Acids

106.31

Weight (kDa)

6.54

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18485
fragaria_vesca	FvH4_5g13240
malus_domestica	MD06G1207000.v1.1
prunus_persica	Prupe.5G211400_v2.0.a1
pyrus_communis	pycom06g18480
rosa_chinensis	RchiOBHm_Chr7g0183921
rosa_laevigata	RLG00000005010
rosa_multiflora	Rmu_sc0004712.1_g000029 Rmu_sc0007533.1_g000009
rosa_rugosa	Rorug06G0461400
rosa_samantha	Rh7AG062600 Rh7BG062800 Rh7CG064100 Rh7DG062600
rosa_wichuraiana	Rw7G005170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1973, 2304
AarI	CACCTGC	1 cut(s)	1309
Acc16I	TGCGCA	1 cut(s)	2747
Acc36I	ACCTGC	1 cut(s)	1309
AccB1I	GGYRCC	2 cut(s)	13, 245
AccBSI	CCGCTC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	2190
AccII	CGCG	1 cut(s)	524
AccIII	TCCGGA	1 cut(s)	844
AclWI	GGATC	3 cut(s)	1388, 1439, 1452
AcoI	YGGCCR	5 cut(s)	265, 289, 1263, 1375, 2473
AcsI	RAATTY	7 cut(s)	683, 751, 1496, 1647, 1989, 2076, 2268
AcuI	CTGAAG	2 cut(s)	2271, 2444
AcyI	GRCGYC	2 cut(s)	237, 246
AfaI	GTAC	4 cut(s)	371, 464, 1001, 1418
AfeI	AGCGCT	1 cut(s)	2828
AfiI	CCNNNNNNNGG	2 cut(s)	256, 274
AflIII	ACRYGT	1 cut(s)	981
AjnI	CCWGG	3 cut(s)	255, 1355, 1750
Alw21I	GWGCWC	2 cut(s)	1355, 1777
Alw26I	GTCTC	3 cut(s)	316, 1331, 2811
Alw44I	GTGCAC	1 cut(s)	1773
AlwI	GGATC	3 cut(s)	1388, 1439, 1452
AlwNI	CAGNNNCTG	1 cut(s)	2618
Ama87I	CYCGRG	1 cut(s)	1014
Aor13HI	TCCGGA	1 cut(s)	844
Aor51HI	AGCGCT	1 cut(s)	2828
AoxI	GGCC	9 cut(s)	3, 258, 265, 289, 1263, 1375, 2455, 2473, 2848
ApaLI	GTGCAC	1 cut(s)	1773
ApeKI	GCWGC	4 cut(s)	1280, 1905, 2399, 2771
ApoI	RAATTY	7 cut(s)	683, 751, 1496, 1647, 1989, 2076, 2268
ArsI	GACNNNNNNTTYG	2 cut(s)	1283, 1315
Asp700I	GAANNNNTTC	2 cut(s)	434, 1064
AspLEI	GCGC	4 cut(s)	248, 521, 2748, 2829
AspS9I	GGNCC	1 cut(s)	2431
AsuC2I	CCSGG	1 cut(s)	2358
AsuII	TTCGAA	2 cut(s)	411, 1289
AvaI	CYCGRG	1 cut(s)	1014
AvaII	GGWCC	1 cut(s)	2431
BaeGI	GKGCMC	2 cut(s)	1489, 1777
BalI	TGGCCA	2 cut(s)	1265, 1377
BamHI	GGATCC	1 cut(s)	1444
BanI	GGYRCC	2 cut(s)	13, 245
BanII	GRGCYC	2 cut(s)	1355, 2358
BbsI	GAAGAC	1 cut(s)	1349
Bbv12I	GWGCWC	2 cut(s)	1355, 1777
BbvI	GCAGC	4 cut(s)	1292, 1892, 2386, 2758
BceAI	ACGGC	1 cut(s)	1629
BcgI	CGANNNNNNTGC	2 cut(s)	1269, 1303
BciT130I	CCWGG	3 cut(s)	257, 1357, 1752
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	2358
BcoDI	GTCTC	3 cut(s)	316, 1331, 2811
BfaI	CTAG	5 cut(s)	1083, 1811, 1856, 2265, 2345
BfmI	CTRYAG	1 cut(s)	2293
BfoI	RGCGCY	3 cut(s)	249, 522, 2830
BfuAI	ACCTGC	1 cut(s)	1309
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	9 cut(s)	183, 268, 292, 522, 1281, 1906, 2400, 2476, 2772
BlsI	GCNGC	9 cut(s)	184, 269, 293, 523, 1282, 1907, 2401, 2477, 2773
Bme1390I	CCNGG	4 cut(s)	257, 1357, 1752, 2358
Bme18I	GGWCC	1 cut(s)	2431
BmeT110I	CYCGRG	1 cut(s)	1014
BmgT120I	GGNCC	1 cut(s)	2431
BmiI	GGNNCC	5 cut(s)	15, 247, 1446, 2355, 2432
BmrFI	CCNGG	4 cut(s)	257, 1357, 1752, 2358
BmrI	ACTGGG	1 cut(s)	1787
BmsI	GCATC	5 cut(s)	366, 1967, 2127, 2411, 2757
BmuI	ACTGGG	1 cut(s)	1787
BpiI	GAAGAC	1 cut(s)	1349
BpmI	CTGGAG	1 cut(s)	239
Bpu14I	TTCGAA	2 cut(s)	411, 1289
BpuEI	CTTGAG	1 cut(s)	451
BpuMI	CCSGG	1 cut(s)	2358
BsaAI	YACGTR	1 cut(s)	1538
BsaHI	GRCGYC	2 cut(s)	237, 246
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 296, 326, 944, 974, 2487, 2517
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 274
Bse118I	RCCGGY	2 cut(s)	287, 1174
Bse1I	ACTGG	4 cut(s)	439, 1263, 1652, 1782
Bse3DI	GCAATG	1 cut(s)	2279
BseAI	TCCGGA	1 cut(s)	844
BseBI	CCWGG	3 cut(s)	257, 1357, 1752
BseDI	CCNNGG	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	256, 274
BseMI	GCAATG	1 cut(s)	2279
BseMII	CTCAG	3 cut(s)	1295, 1700, 2717
BseNI	ACTGG	4 cut(s)	439, 1263, 1652, 1782
BseRI	GAGGAG	3 cut(s)	185, 242, 1202
BseSI	GKGCMC	2 cut(s)	1489, 1777
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	4 cut(s)	1292, 1892, 2386, 2758
BseYI	CCCAGC	3 cut(s)	884, 2099, 2197
Bsh1236I	CGCG	1 cut(s)	524
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	9 cut(s)	5, 260, 267, 291, 1265, 1377, 2457, 2475, 2850
BshNI	GGYRCC	2 cut(s)	13, 245
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	1355, 1777
BsiHKCI	CYCGRG	1 cut(s)	1014
BsiSI	CCGG	6 cut(s)	168, 288, 845, 1175, 2358, 2434
BslI	CCNNNNNNNGG	2 cut(s)	256, 274
BsmAI	GTCTC	3 cut(s)	316, 1331, 2811
BsmBI	CGTCTC	2 cut(s)	316, 1331
BsmI	GAATGC	5 cut(s)	451, 664, 1066, 1366, 1669
BsnI	GGCC	9 cut(s)	5, 260, 267, 291, 1265, 1377, 2457, 2475, 2850
BsoBI	CYCGRG	1 cut(s)	1014
Bsp119I	TTCGAA	2 cut(s)	411, 1289
Bsp1286I	GDGCHC	4 cut(s)	1355, 1489, 1777, 2358
Bsp13I	TCCGGA	1 cut(s)	844
Bsp143I	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
BspANI	GGCC	9 cut(s)	5, 260, 267, 291, 1265, 1377, 2457, 2475, 2850
BspCNI	CTCAG	3 cut(s)	1296, 1699, 2718
BspEI	TCCGGA	1 cut(s)	844
BspFNI	CGCG	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	2626
BspLI	GGNNCC	5 cut(s)	15, 247, 1446, 2355, 2432
BspMI	ACCTGC	1 cut(s)	1309
BspPI	GGATC	3 cut(s)	1388, 1439, 1452
BspT104I	TTCGAA	2 cut(s)	411, 1289
BspT107I	GGYRCC	2 cut(s)	13, 245
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	2279
BsrFI	RCCGGY	2 cut(s)	287, 1174
BsrI	ACTGG	4 cut(s)	439, 1263, 1652, 1782
BssAI	RCCGGY	2 cut(s)	287, 1174
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
BssNI	GRCGYC	2 cut(s)	237, 246
Bst2UI	CCWGG	3 cut(s)	257, 1357, 1752
Bst4CI	ACNGT	6 cut(s)	868, 1159, 1348, 1797, 1937, 2385
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	2 cut(s)	237, 246
BstAPI	GCANNNNNTGC	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	1538
BstBI	TTCGAA	2 cut(s)	411, 1289
BstC8I	GCNNGC	4 cut(s)	296, 1846, 2473, 2682
BstDEI	CTNAG	5 cut(s)	1304, 1686, 2285, 2726, 2775
BstDSI	CCRYGG	1 cut(s)	522
BstEII	GGTNACC	1 cut(s)	1153
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	524
BstH2I	RGCGCY	3 cut(s)	249, 522, 2830
BstHHI	GCGC	4 cut(s)	248, 521, 2748, 2829
BstKTI	GATC	5 cut(s)	564, 1114, 1396, 1447, 1717
BstMAI	GTCTC	3 cut(s)	316, 1331, 2811
BstMBI	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 168, 245, 668, 1126, 1277, 1467, 1781, 1841
BstNI	CCWGG	3 cut(s)	257, 1357, 1752
BstNSI	RCATGY	5 cut(s)	985, 2091, 2184, 2197, 2248
BstPI	GGTNACC	1 cut(s)	1153
BstSCI	CCNGG	4 cut(s)	255, 1355, 1750, 2356
BstSFI	CTRYAG	1 cut(s)	2293
BstSLI	GKGCMC	2 cut(s)	1489, 1777
BstSNI	TACGTA	1 cut(s)	1538
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	1292, 1892, 2386, 2758
BstV2I	GAAGAC	1 cut(s)	1349
BstX2I	RGATCY	2 cut(s)	1393, 1444
BstXI	CCANNNNNNTGG	2 cut(s)	263, 1659
BstYI	RGATCY	2 cut(s)	1393, 1444
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	9 cut(s)	5, 260, 267, 291, 1265, 1377, 2457, 2475, 2850
BtgI	CCRYGG	1 cut(s)	522
BtsIMutI	CAGTG	5 cut(s)	446, 1353, 1659, 1775, 2723
BveI	ACCTGC	1 cut(s)	1309
Cac8I	GCNNGC	4 cut(s)	296, 1846, 2473, 2682
CaiI	CAGNNNCTG	1 cut(s)	2618
CciI	TCATGA	1 cut(s)	2626
CfoI	GCGC	4 cut(s)	248, 521, 2748, 2829
Cfr10I	RCCGGY	2 cut(s)	287, 1174
Cfr13I	GGNCC	1 cut(s)	2431
Cfr42I	CCGCGG	1 cut(s)	525
CseI	GACGC	2 cut(s)	245, 1796
CsiI	ACCWGGT	1 cut(s)	1750
Csp6I	GTAC	4 cut(s)	370, 463, 1000, 1417
CspCI	CAANNNNNGTGG	2 cut(s)	553, 588
CviQI	GTAC	4 cut(s)	370, 463, 1000, 1417
DdeI	CTNAG	5 cut(s)	1304, 1686, 2285, 2726, 2775
DinI	GGCGCC	1 cut(s)	247
DpnI	GATC	5 cut(s)	563, 1113, 1395, 1446, 1716
DpnII	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
DraI	TTTAAA	2 cut(s)	532, 2229
EaeI	YGGCCR	5 cut(s)	265, 289, 1263, 1375, 2473
EagI	CGGCCG	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
EciI	GGCGGA	2 cut(s)	169, 2561
Ecl136II	GAGCTC	1 cut(s)	1353
EclXI	CGGCCG	1 cut(s)	289
Eco105I	TACGTA	1 cut(s)	1538
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	1355, 2358
Eco32I	GATATC	1 cut(s)	2784
Eco47I	GGWCC	1 cut(s)	2431
Eco47III	AGCGCT	1 cut(s)	2828
Eco52I	CGGCCG	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	1353
Eco57I	CTGAAG	2 cut(s)	2271, 2444
Eco88I	CYCGRG	1 cut(s)	1014
Eco91I	GGTNACC	1 cut(s)	1153
EcoICRI	GAGCTC	1 cut(s)	1353
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	1153
EcoRI	GAATTC	3 cut(s)	751, 1989, 2076
EcoRII	CCWGG	3 cut(s)	255, 1355, 1750
EcoRV	GATATC	1 cut(s)	2784
EcoT22I	ATGCAT	2 cut(s)	664, 2182
EcoT38I	GRGCYC	2 cut(s)	1355, 2358
EgeI	GGCGCC	1 cut(s)	247
EheI	GGCGCC	1 cut(s)	247
Esp3I	CGTCTC	2 cut(s)	316, 1331
FalI	AAGNNNNNCTT	2 cut(s)	1833, 1865
FauI	CCCGC	3 cut(s)	124, 362, 407
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	2190
Fnu4HI	GCNGC	9 cut(s)	183, 268, 292, 522, 1281, 1906, 2400, 2476, 2772
FriOI	GRGCYC	2 cut(s)	1355, 2358
Fsp4HI	GCNGC	9 cut(s)	183, 268, 292, 522, 1281, 1906, 2400, 2476, 2772
FspBI	CTAG	5 cut(s)	1083, 1811, 1856, 2265, 2345
FspI	TGCGCA	1 cut(s)	2747
GlaI	GCGC	4 cut(s)	247, 520, 2747, 2828
GluI	GCNGC	9 cut(s)	183, 268, 292, 522, 1281, 1906, 2400, 2476, 2772
GsaI	CCCAGC	3 cut(s)	888, 2103, 2201
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	3 cut(s)	249, 522, 2830
HaeIII	GGCC	9 cut(s)	5, 260, 267, 291, 1265, 1377, 2457, 2475, 2850
HapII	CCGG	6 cut(s)	168, 288, 845, 1175, 2358, 2434
HgaI	GACGC	2 cut(s)	245, 1796
HhaI	GCGC	4 cut(s)	248, 521, 2748, 2829
Hin1I	GRCGYC	2 cut(s)	237, 246
Hin6I	GCGC	4 cut(s)	246, 519, 2746, 2827
HinP1I	GCGC	4 cut(s)	246, 519, 2746, 2827
HindIII	AAGCTT	2 cut(s)	2223, 2678
HpaII	CCGG	6 cut(s)	168, 288, 845, 1175, 2358, 2434
Hpy166II	GTNNAC	7 cut(s)	1604, 1775, 1790, 2191, 2565, 2591, 2635
Hpy188I	TCNGA	8 cut(s)	394, 643, 775, 1195, 1235, 1689, 2463, 2597
Hpy188III	TCNNGA	6 cut(s)	468, 845, 1083, 1448, 1700, 2627
Hpy8I	GTNNAC	7 cut(s)	1604, 1775, 1790, 2191, 2565, 2591, 2635
Hpy99I	CGWCG	2 cut(s)	859, 1615
HpyCH4III	ACNGT	6 cut(s)	868, 1159, 1348, 1797, 1937, 2385
HpyCH4IV	ACGT	2 cut(s)	857, 1537
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 168, 245, 668, 1126, 1277, 1467, 1781, 1841
HpyF3I	CTNAG	5 cut(s)	1304, 1686, 2285, 2726, 2775
HpySE526I	ACGT	2 cut(s)	857, 1537
Hsp92I	GRCGYC	2 cut(s)	237, 246
HspAI	GCGC	4 cut(s)	246, 519, 2746, 2827
KasI	GGCGCC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	844
Ksp22I	TGATCA	1 cut(s)	561
KspI	CCGCGG	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
LmnI	GCTCC	6 cut(s)	303, 1103, 1213, 1358, 2017, 2353
Lsp1109I	GCAGC	4 cut(s)	1292, 1892, 2386, 2758
LweI	GCATC	5 cut(s)	366, 1967, 2127, 2411, 2757
MabI	ACCWGGT	1 cut(s)	1750
MaeI	CTAG	5 cut(s)	1083, 1811, 1856, 2265, 2345
MaeII	ACGT	2 cut(s)	857, 1537
MaeIII	GTNAC	9 cut(s)	417, 862, 1153, 1170, 1223, 1679, 2090, 2522, 2762
MalI	GATC	5 cut(s)	563, 1113, 1395, 1446, 1716
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
MboII	GAAGA	9 cut(s)	90, 637, 803, 1354, 1493, 1652, 2264, 2569, 2659
MfeI	CAATTG	2 cut(s)	492, 2213
MflI	RGATCY	2 cut(s)	1393, 1444
MhlI	GDGCHC	4 cut(s)	1355, 1489, 1777, 2358
MlsI	TGGCCA	2 cut(s)	1265, 1377
MluNI	TGGCCA	2 cut(s)	1265, 1377
Mly113I	GGCGCC	1 cut(s)	246
MlyI	GAGTC	3 cut(s)	1199, 2549, 2739
MmeI	TCCRAC	3 cut(s)	1173, 1533, 2462
Mox20I	TGGCCA	2 cut(s)	1265, 1377
Mph1103I	ATGCAT	2 cut(s)	664, 2182
MroI	TCCGGA	1 cut(s)	844
MroXI	GAANNNNTTC	2 cut(s)	434, 1064
MscI	TGGCCA	2 cut(s)	1265, 1377
MseI	TTAA	9 cut(s)	507, 531, 708, 1004, 1163, 1940, 2109, 2228, 2702
MslI	CAYNNNNRTG	3 cut(s)	365, 1886, 1998
Msp20I	TGGCCA	2 cut(s)	1265, 1377
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	6 cut(s)	168, 288, 845, 1175, 2358, 2434
MspR9I	CCNGG	4 cut(s)	257, 1357, 1752, 2358
MssI	GTTTAAAC	1 cut(s)	532
MunI	CAATTG	2 cut(s)	492, 2213
Mva1269I	GAATGC	5 cut(s)	451, 664, 1066, 1366, 1669
MvaI	CCWGG	3 cut(s)	257, 1357, 1752
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	9 cut(s)	11, 168, 245, 668, 1126, 1277, 1467, 1781, 1841
NarI	GGCGCC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	2358
NdeII	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
NlaIV	GGNNCC	5 cut(s)	15, 247, 1446, 2355, 2432
NmeAIII	GCCGAG	1 cut(s)	1339
NmuCI	GTSAC	5 cut(s)	862, 1153, 1223, 2522, 2762
NsbI	TGCGCA	1 cut(s)	2747
NsiI	ATGCAT	2 cut(s)	664, 2182
NspI	RCATGY	5 cut(s)	985, 2091, 2184, 2197, 2248
NspV	TTCGAA	2 cut(s)	411, 1289
PaeR7I	CTCGAG	1 cut(s)	1014
PagI	TCATGA	1 cut(s)	2626
PaqCI	CACCTGC	1 cut(s)	1309
PceI	AGGCCT	1 cut(s)	260
PciI	ACATGT	1 cut(s)	981
PctI	GAATGC	5 cut(s)	451, 664, 1066, 1366, 1669
PdmI	GAANNNNTTC	2 cut(s)	434, 1064
PfeI	GAWTC	7 cut(s)	395, 701, 916, 1519, 1556, 1743, 2615
PflFI	GACNNNGTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	1355
PkrI	GCNGC	9 cut(s)	184, 269, 293, 523, 1282, 1907, 2401, 2477, 2773
PleI	GAGTC	3 cut(s)	1198, 2548, 2738
PluTI	GGCGCC	1 cut(s)	249
PmeI	GTTTAAAC	1 cut(s)	532
PpsI	GAGTC	3 cut(s)	1198, 2548, 2738
Ppu21I	YACGTR	1 cut(s)	1538
PscI	ACATGT	1 cut(s)	981
PsiI	TTATAA	2 cut(s)	1973, 2304
Psp124BI	GAGCTC	1 cut(s)	1355
Psp6I	CCWGG	3 cut(s)	255, 1355, 1750
PspEI	GGTNACC	1 cut(s)	1153
PspFI	CCCAGC	3 cut(s)	884, 2099, 2197
PspGI	CCWGG	3 cut(s)	255, 1355, 1750
PspN4I	GGNNCC	5 cut(s)	15, 247, 1446, 2355, 2432
PspPI	GGNCC	1 cut(s)	2431
PspXI	VCTCGAGB	1 cut(s)	1014
PstNI	CAGNNNCTG	1 cut(s)	2618
PsuI	RGATCY	2 cut(s)	1393, 1444
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	4 cut(s)	371, 464, 1001, 1418
RsaNI	GTAC	4 cut(s)	370, 463, 1000, 1417
RseI	CAYNNNNRTG	3 cut(s)	365, 1886, 1998
SacI	GAGCTC	1 cut(s)	1355
SacII	CCGCGG	1 cut(s)	525
SaqAI	TTAA	9 cut(s)	507, 531, 708, 1004, 1163, 1940, 2109, 2228, 2702
SatI	GCNGC	9 cut(s)	183, 268, 292, 522, 1281, 1906, 2400, 2476, 2772
Sau3AI	GATC	5 cut(s)	561, 1111, 1393, 1444, 1714
Sau96I	GGNCC	1 cut(s)	2431
SchI	GAGTC	3 cut(s)	1199, 2549, 2739
ScrFI	CCNGG	4 cut(s)	257, 1357, 1752, 2358
SduI	GDGCHC	4 cut(s)	1355, 1489, 1777, 2358
SexAI	ACCWGGT	1 cut(s)	1750
SfaNI	GCATC	5 cut(s)	366, 1967, 2127, 2411, 2757
SfcI	CTRYAG	1 cut(s)	2293
SfoI	GGCGCC	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	1014
Sfr303I	CCGCGG	1 cut(s)	525
SfuI	TTCGAA	2 cut(s)	411, 1289
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	2431
SlaI	CTCGAG	1 cut(s)	1014
SmiMI	CAYNNNNRTG	3 cut(s)	365, 1886, 1998
SmlI	CTYRAG	2 cut(s)	466, 1014
SmoI	CTYRAG	2 cut(s)	466, 1014
SnaBI	TACGTA	1 cut(s)	1538
SseBI	AGGCCT	1 cut(s)	260
SspDI	GGCGCC	1 cut(s)	245
SspI	AATATT	2 cut(s)	2126, 2658
SspMI	CTAG	5 cut(s)	1083, 1811, 1856, 2265, 2345
SstI	GAGCTC	1 cut(s)	1355
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	4 cut(s)	255, 1355, 1750, 2356
TaaI	ACNGT	6 cut(s)	868, 1159, 1348, 1797, 1937, 2385
TaiI	ACGT	2 cut(s)	860, 1540
TaqI	TCGA	9 cut(s)	282, 411, 755, 1015, 1289, 1610, 1713, 1723, 2387
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	5 cut(s)	185, 270, 294, 524, 2478
TfiI	GAWTC	7 cut(s)	395, 701, 916, 1519, 1556, 1743, 2615
Tru1I	TTAA	9 cut(s)	507, 531, 708, 1004, 1163, 1940, 2109, 2228, 2702
Tru9I	TTAA	9 cut(s)	507, 531, 708, 1004, 1163, 1940, 2109, 2228, 2702
TscAI	CASTG	5 cut(s)	446, 1353, 1659, 1782, 2730
TseFI	GTSAC	5 cut(s)	862, 1153, 1223, 2522, 2762
TseI	GCWGC	4 cut(s)	1280, 1905, 2399, 2771
Tsp45I	GTSAC	5 cut(s)	862, 1153, 1223, 2522, 2762
TspGWI	ACGGA	2 cut(s)	1022, 2816
TspRI	CASTG	5 cut(s)	446, 1353, 1659, 1782, 2730
Tth111I	GACNNNGTC	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	1773
VpaK11BI	GGWCC	1 cut(s)	2431
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	7 cut(s)	683, 751, 1496, 1647, 1989, 2076, 2268
XbaI	TCTAGA	1 cut(s)	1082
XceI	RCATGY	5 cut(s)	985, 2091, 2184, 2197, 2248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1385
XhoI	CTCGAG	1 cut(s)	1014
XmiI	GTMKAC	1 cut(s)	2190
XmnI	GAANNNNTTC	2 cut(s)	434, 1064
XspI	CTAG	5 cut(s)	1083, 1811, 1856, 2265, 2345
Zsp2I	ATGCAT	2 cut(s)	664, 2182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.