FvH4_5g13390

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015444
Physical Location & Seq
Forward (+)
7556519 .. 7558181
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13390.t1

Sequence Viewer

Length: 945 bp
ATGCAAGACATTCAGTCGTCGTTCGGAGGGAGGTTCTTCGGCGGAGCCGGAGCCGGAGACAGGAGGCTACGGCCGCACCACAACCAAAACCACCAGGCCTTGAAGTGTCCTAGATGCGACTCGCTCAACACAAAGTTCTGCTACTACAACAACTACAACCTTTCTCAGCCGCGCCACTTCTGCAAGAGCTGCCGACGCTACTGGACCAAAGGTGGCGTCCTCCGCAACGTCCCGGTCGGCGGAGGTTGCCGCAAAGCCAAGCGATCCAAGCCGAAGTCCTCTTCTTCGTCGCCGGCATCACCGCCGCAGCCGAACAGCGAGCGCAGAGCTACCTCCAACTCTAGCAGCGAAAGCTCGAGCCTCACCAACACTACTGCCACAGCAACGGAGGCCGTCTCGGCGCCGTCGTCCACGTCATCAGCTTCCAATCTTCTCAACATTCCAGACTCCAAGTTCTTCGTCTCCCAAAGCGGCGCAAACGCGAGTTTCGAGACGACGACTACTGCAACCATGCTCGAACAGAGCGCTGCCACAGAAATTGGAATGTTCTCAGATATGGTAACCTTCACGAGCTTGATCACGGCCTCGAACGACGTGCCGTTTGGTTTCACCAACATCAACAATATTTCCGTCCCGCCGTTCAGGGTGAACCAACCGGGTCATCAACAACAGCAGGTTGAGCAAAGCCAGTGGGAGCAGCAACAAAACAGCCAGGAAATGAAGTTGCCGGAGTTGACCGGAGGAATGCTGGATCAGACAACGGCTCAGGTGGACTTATCGGTGTTTCAAACAAAAGCCAACGGCGGAGGAGGAGGGTTTGGGTCGCTGGATTGGCAGCCGGCTGGTGATCAAGGTTTGTTTGATCTCCCCAATACCGTTGATCATGCATATTGGAGTCAGGGTCAATGGACCGATCAAGATCCTCCCAGTCTCTACATCCCGTAA

Protein Analysis

315

Amino Acids

34.1

Weight (kDa)

7.64

Isoelectric Point (pI)

65.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 32 - 88 8.4e-34 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60850
fragaria_vesca FvH4_5g13390
malus_domestica MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica Prupe.5G210200_v2.0.a1
pyrus_communis pycom06g18370 pycom14g17960
rosa_chinensis RchiOBHm_Chr7g0183751
rosa_laevigata RLG00000005026
rosa_multiflora Rmu_sc0003610.1_g000031
rosa_rugosa Rorug06G0460000
rosa_samantha Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana Rw7G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 664
AccB1I GGYRCC 1 cut(s) 400
AccII CGCG 2 cut(s) 172, 482
AclWI GGATC 3 cut(s) 258, 759, 914
AcoI YGGCCR 1 cut(s) 71
AcyI GRCGYC 2 cut(s) 216, 401
AfeI AGCGCT 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 60, 239
AgsI TTSAA 2 cut(s) 103, 788
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 2 cut(s) 414, 595
AjnI CCWGG 2 cut(s) 93, 711
AluBI AGCT 5 cut(s) 189, 329, 354, 422, 573
AluI AGCT 5 cut(s) 189, 329, 354, 422, 573
Alw26I GTCTC 5 cut(s) 51, 400, 466, 485, 935
AlwI GGATC 3 cut(s) 258, 759, 914
Ama87I CYCGRG 1 cut(s) 355
Aor51HI AGCGCT 1 cut(s) 526
AoxI GGCC 4 cut(s) 71, 96, 390, 582
ApeKI GCWGC 6 cut(s) 189, 307, 345, 527, 697, 835
ArsI GACNNNNNNTTYG 4 cut(s) 201, 233, 584, 616
AspLEI GCGC 5 cut(s) 174, 324, 403, 476, 527
AspS9I GGNCC 2 cut(s) 204, 909
AsuC2I CCSGG 2 cut(s) 233, 657
AsuHPI GGTGA 5 cut(s) 291, 355, 601, 658, 857
AvaI CYCGRG 1 cut(s) 355
AvaII GGWCC 2 cut(s) 204, 909
BanI GGYRCC 1 cut(s) 400
BauI CACGAG 1 cut(s) 568
BbvI GCAGC 6 cut(s) 176, 319, 357, 514, 709, 847
BceAI ACGGC 8 cut(s) 86, 377, 388, 583, 597, 622, 777, 817
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 2 cut(s) 95, 713
BclI TGATCA 3 cut(s) 576, 847, 880
BcnI CCSGG 2 cut(s) 233, 657
BcoDI GTCTC 5 cut(s) 51, 400, 466, 485, 935
BfaI CTAG 2 cut(s) 111, 342
BfoI RGCGCY 2 cut(s) 404, 528
BfuAI ACCTGC 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 398
Bme1390I CCNGG 4 cut(s) 95, 233, 657, 713
Bme18I GGWCC 2 cut(s) 204, 909
BmeRI GACNNNNNGTC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 355
BmgBI CACGTC 2 cut(s) 414, 595
BmgT120I GGNCC 2 cut(s) 204, 909
BmiI GGNNCC 3 cut(s) 46, 52, 402
BmrFI CCNGG 4 cut(s) 95, 233, 657, 713
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 2 cut(s) 104, 305
BmuI ACTGGG 1 cut(s) 921
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu10I CCTNAGC 1 cut(s) 765
BpuMI CCSGG 2 cut(s) 233, 657
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 2 cut(s) 216, 401
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 239
Bse118I RCCGGY 2 cut(s) 292, 838
Bse1I ACTGG 3 cut(s) 206, 688, 927
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 2 cut(s) 95, 713
BseGI GGATG 1 cut(s) 936
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 2 cut(s) 60, 239
BseMII CTCAG 3 cut(s) 179, 564, 779
BseNI ACTGG 3 cut(s) 206, 688, 927
BseRI GAGGAG 2 cut(s) 822, 825
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 6 cut(s) 176, 319, 357, 514, 709, 847
Bsh1236I CGCG 2 cut(s) 172, 482
Bsh1285I CGRYCG 2 cut(s) 74, 237
BshFI GGCC 4 cut(s) 73, 98, 392, 584
BshNI GGYRCC 1 cut(s) 400
BsiEI CGRYCG 2 cut(s) 74, 237
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 8 cut(s) 48, 54, 233, 293, 656, 728, 738, 839
BslFI GGGAC 2 cut(s) 215, 617
BslI CCNNNNNNNGG 2 cut(s) 60, 239
BsmAI GTCTC 5 cut(s) 51, 400, 466, 485, 935
BsmBI CGTCTC 3 cut(s) 400, 466, 485
BsmFI GGGAC 2 cut(s) 215, 617
BsmI GAATGC 1 cut(s) 750
BsnI GGCC 4 cut(s) 73, 98, 392, 584
BsoBI CYCGRG 1 cut(s) 355
Bsp143I GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
BspANI GGCC 4 cut(s) 73, 98, 392, 584
BspCNI CTCAG 3 cut(s) 178, 563, 778
BspFNI CGCG 2 cut(s) 172, 482
BspLI GGNNCC 3 cut(s) 46, 52, 402
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 3 cut(s) 258, 759, 914
BspT107I GGYRCC 1 cut(s) 400
BsrFI RCCGGY 2 cut(s) 292, 838
BsrI ACTGG 3 cut(s) 206, 688, 927
BssAI RCCGGY 2 cut(s) 292, 838
BssMI GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
BssNI GRCGYC 2 cut(s) 216, 401
BssSI CACGAG 1 cut(s) 568
Bst2BI CACGAG 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 95, 713
Bst4CI ACNGT 1 cut(s) 877
Bst6I CTCTTC 1 cut(s) 286
BstACI GRCGYC 2 cut(s) 216, 401
BstAPI GCANNNNNTGC 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 294, 320, 840
BstDEI CTNAG 3 cut(s) 165, 550, 765
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 1 cut(s) 936
BstFNI CGCG 2 cut(s) 172, 482
BstH2I RGCGCY 2 cut(s) 404, 528
BstHHI GCGC 5 cut(s) 174, 324, 403, 476, 527
BstKTI GATC 8 cut(s) 266, 579, 754, 850, 865, 883, 916, 922
BstMAI GTCTC 5 cut(s) 51, 400, 466, 485, 935
BstMBI GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
BstMCI CGRYCG 2 cut(s) 74, 237
BstNI CCWGG 2 cut(s) 95, 713
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 4 cut(s) 93, 231, 655, 711
BstUI CGCG 2 cut(s) 172, 482
BstV1I GCAGC 6 cut(s) 176, 319, 357, 514, 709, 847
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
BstZI CGGCCG 1 cut(s) 71
BsuRI GGCC 4 cut(s) 73, 98, 392, 584
BtrI CACGTC 2 cut(s) 414, 595
BtsCI GGATG 1 cut(s) 936
BtsIMutI CAGTG 1 cut(s) 695
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 3 cut(s) 294, 320, 840
CfoI GCGC 5 cut(s) 174, 324, 403, 476, 527
Cfr10I RCCGGY 2 cut(s) 292, 838
Cfr13I GGNCC 2 cut(s) 204, 909
CseI GACGC 2 cut(s) 204, 205
CspCI CAANNNNNGTGG 4 cut(s) 520, 555, 671, 706
CviAII CATG 2 cut(s) 511, 884
DdeI CTNAG 3 cut(s) 165, 550, 765
DinI GGCGCC 1 cut(s) 402
DpnI GATC 8 cut(s) 265, 578, 753, 849, 864, 882, 915, 921
DpnII GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 71
EagI CGGCCG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 286
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 286
EciI GGCGGA 3 cut(s) 57, 255, 819
EclXI CGGCCG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 204, 909
Eco47III AGCGCT 1 cut(s) 526
Eco52I CGGCCG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 355
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 93, 711
EcoT22I ATGCAT 1 cut(s) 889
EgeI GGCGCC 1 cut(s) 402
EheI GGCGCC 1 cut(s) 402
Esp3I CGTCTC 3 cut(s) 400, 466, 485
FaeI CATG 2 cut(s) 514, 887
FaiI YATR 4 cut(s) 512, 557, 885, 889
FaqI GGGAC 2 cut(s) 215, 617
FatI CATG 2 cut(s) 510, 883
FauI CCCGC 1 cut(s) 642
FbaI TGATCA 3 cut(s) 576, 847, 880
FokI GGATG 1 cut(s) 923
FspBI CTAG 2 cut(s) 111, 342
GlaI GCGC 5 cut(s) 173, 323, 402, 475, 526
HaeII RGCGCY 2 cut(s) 404, 528
HaeIII GGCC 4 cut(s) 73, 98, 392, 584
HapII CCGG 8 cut(s) 48, 54, 233, 293, 656, 728, 738, 839
HgaI GACGC 2 cut(s) 204, 205
HhaI GCGC 5 cut(s) 174, 324, 403, 476, 527
Hin1I GRCGYC 2 cut(s) 216, 401
Hin1II CATG 2 cut(s) 514, 887
Hin6I GCGC 5 cut(s) 172, 322, 401, 474, 525
HinP1I GCGC 5 cut(s) 172, 322, 401, 474, 525
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 3 cut(s) 119, 446, 895
HpaII CCGG 8 cut(s) 48, 54, 233, 293, 656, 728, 738, 839
HphI GGTGA 5 cut(s) 291, 355, 601, 658, 857
Hpy166II GTNNAC 4 cut(s) 411, 649, 735, 772
Hpy188I TCNGA 3 cut(s) 26, 553, 756
Hpy188III TCNNGA 4 cut(s) 443, 490, 568, 917
Hpy8I GTNNAC 4 cut(s) 411, 649, 735, 772
Hpy99I CGWCG 6 cut(s) 22, 198, 292, 409, 499, 596
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 1 cut(s) 877
HpyCH4IV ACGT 3 cut(s) 228, 413, 594
HpyCH4V TGCA 4 cut(s) 4, 183, 506, 887
HpyF3I CTNAG 3 cut(s) 165, 550, 765
HpySE526I ACGT 3 cut(s) 228, 413, 594
Hsp92I GRCGYC 2 cut(s) 216, 401
Hsp92II CATG 2 cut(s) 514, 887
HspAI GCGC 5 cut(s) 172, 322, 401, 474, 525
KasI GGCGCC 1 cut(s) 400
KroI GCCGGC 2 cut(s) 292, 838
KroNI GCCGGC 2 cut(s) 294, 840
Ksp22I TGATCA 3 cut(s) 576, 847, 880
Kzo9I GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
LmnI GCTCC 3 cut(s) 44, 50, 694
Lsp1109I GCAGC 6 cut(s) 176, 319, 357, 514, 709, 847
LweI GCATC 2 cut(s) 104, 305
MaeI CTAG 2 cut(s) 111, 342
MaeII ACGT 3 cut(s) 228, 413, 594
MaeIII GTNAC 1 cut(s) 559
MalI GATC 8 cut(s) 265, 578, 753, 849, 864, 882, 915, 921
MboI GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
MboII GAAGA 5 cut(s) 28, 273, 276, 422, 448
MflI RGATCY 1 cut(s) 919
MluCI AATT 1 cut(s) 537
Mly113I GGCGCC 1 cut(s) 401
MlyI GAGTC 3 cut(s) 113, 440, 904
MmeI TCCRAC 1 cut(s) 360
Mph1103I ATGCAT 1 cut(s) 889
MroNI GCCGGC 2 cut(s) 292, 838
MspI CCGG 8 cut(s) 48, 54, 233, 293, 656, 728, 738, 839
MspR9I CCNGG 4 cut(s) 95, 233, 657, 713
Mva1269I GAATGC 1 cut(s) 750
MvaI CCWGG 2 cut(s) 95, 713
MvnI CGCG 2 cut(s) 172, 482
NaeI GCCGGC 2 cut(s) 294, 840
NarI GGCGCC 1 cut(s) 401
NciI CCSGG 2 cut(s) 233, 657
NdeII GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
NgoMIV GCCGGC 2 cut(s) 292, 838
NlaIII CATG 2 cut(s) 514, 887
NlaIV GGNNCC 3 cut(s) 46, 52, 402
NmeAIII GCCGAG 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 889
PaeR7I CTCGAG 1 cut(s) 355
PceI AGGCCT 1 cut(s) 98
PcsI WCGNNNNNNNCGW 2 cut(s) 404, 486
PctI GAATGC 1 cut(s) 750
PdiI GCCGGC 2 cut(s) 294, 840
PleI GAGTC 3 cut(s) 113, 440, 903
PluTI GGCGCC 1 cut(s) 404
PpsI GAGTC 3 cut(s) 113, 440, 903
Psp6I CCWGG 2 cut(s) 93, 711
PspEI GGTNACC 1 cut(s) 559
PspGI CCWGG 2 cut(s) 93, 711
PspN4I GGNNCC 3 cut(s) 46, 52, 402
PspPI GGNCC 2 cut(s) 204, 909
PspXI VCTCGAGB 1 cut(s) 355
PsuI RGATCY 1 cut(s) 919
Sau3AI GATC 8 cut(s) 263, 576, 751, 847, 862, 880, 913, 919
Sau96I GGNCC 2 cut(s) 204, 909
SchI GAGTC 3 cut(s) 113, 440, 904
ScrFI CCNGG 4 cut(s) 95, 233, 657, 713
SfaNI GCATC 2 cut(s) 104, 305
SfoI GGCGCC 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 355
SinI GGWCC 2 cut(s) 204, 909
SlaI CTCGAG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 1 cut(s) 537
SseBI AGGCCT 1 cut(s) 98
SspDI GGCGCC 1 cut(s) 400
SspI AATATT 1 cut(s) 625
SspMI CTAG 2 cut(s) 111, 342
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 4 cut(s) 93, 231, 655, 711
TaaI ACNGT 1 cut(s) 877
TaiI ACGT 3 cut(s) 231, 416, 597
TaqI TCGA 4 cut(s) 356, 489, 516, 587
TaqII GACCGA 1 cut(s) 926
TasI AATT 1 cut(s) 537
TauI GCSGC 5 cut(s) 76, 172, 252, 307, 474
TscAI CASTG 1 cut(s) 695
TseI GCWGC 6 cut(s) 189, 307, 345, 527, 697, 835
TspDTI ATGAA 1 cut(s) 734
TspGWI ACGGA 2 cut(s) 401, 619
TspRI CASTG 1 cut(s) 695
VpaK11BI GGWCC 2 cut(s) 204, 909
XhoI CTCGAG 1 cut(s) 355
XspI CTAG 2 cut(s) 111, 342
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.