Rh7BG060800

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015444
Physical Location & Seq
Reverse (-)
4061701 .. 4063390
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG060800.1

Sequence Viewer

Length: 951 bp
ATGCAAGACATTCAGTCGATCGGAGGGAGGTTCTTTGGCAGCGCCGGAGGCGGAGACCGGAGGCTACGGCCGCACCACAACCAGAACCACCAGGCCTTGAAGTGCCCTAGGTGCGACTCGCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCGCGCCACTTCTGCAAGAGCTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGAGGCTGCCGGAAAACGAAGCGTTCCAAGCCGAAGTCTTCTTCTTCTTCGTCGCCGGCCTCACCGCCGCAGCAGCCGAACAGCGAGCGCAGAGCCAGCTCCAATAATTCCAGCAGCGAGAGCTCGAGCCTCACGAACACGGCCACCGCAACGGCGACGGAGGCGGTCTCGCCGCCGTCTTCGACTTCCAATCTTCTCAACATTCCTCGTCCCGAGTCCAAATTCTTCGTTTCCCCGAACGCGAATTTCGAGGCGGCTGGAGGAGCCACCATGCTCGAACAGAGCGCCACGGAAATTGGAATGTTCTCGGATATTGGGAGCTTCACGAGCTTGATCACGGCCTCCTCGAACGACGTGCCGTTCGGTTTCACCAACATCAACGACATTTCCGTCTCGCCGTTCAGGCCAAACCAACCGGCGGCCGGTCATCTAAATCAGGTGCAGCAAAACCAGTGGGAGCAGCAACACAACCAGAATAATCAGGAACTGAAGATGCCGGACATCACCGGAGGAATGCTGGATCAGACGGCTCAGGTGGATTTATCAGTGTTCCAAACCAAAATCAACGGCGGAGGAGGAGGAGGGTTTGGGTCGCTGGATTGGCAGCCGGCCGGTGATCAAGGTCTGTTTGATCTCCCCAACACCGTTGATCAAGCATACTGGAGTCAGGGTCAGTGGACCGATCAAGACCCTCCCAGTCTCTACCTCCCGTAA

Protein Analysis

316

Amino Acids

34.28

Weight (kDa)

8.2

Isoelectric Point (pI)

66.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 31 - 87 1.2e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60850
fragaria_vesca FvH4_5g13390
malus_domestica MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica Prupe.5G210200_v2.0.a1
pyrus_communis pycom06g18370 pycom14g17960
rosa_chinensis RchiOBHm_Chr7g0183751
rosa_laevigata RLG00000005026
rosa_multiflora Rmu_sc0003610.1_g000031
rosa_rugosa Rorug06G0460000
rosa_samantha Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana Rw7G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 626
AccII CGCG 2 cut(s) 169, 479
AclWI GGATC 1 cut(s) 765
AcoI YGGCCR 4 cut(s) 68, 378, 657, 846
AcsI RAATTY 2 cut(s) 458, 481
AcuI CTGAAG 1 cut(s) 746
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 236, 655, 659
AgsI TTSAA 1 cut(s) 100
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 1 cut(s) 592
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 5 cut(s) 186, 336, 360, 558, 567
AluI AGCT 5 cut(s) 186, 336, 360, 558, 567
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 4 cut(s) 48, 409, 634, 941
AlwI GGATC 1 cut(s) 765
AlwNI CAGNNNCTG 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 361, 449
AoxI GGCC 8 cut(s) 68, 93, 294, 378, 576, 641, 657, 846
ApeKI GCWGC 9 cut(s) 39, 186, 243, 307, 310, 351, 679, 697, 841
ApoI RAATTY 2 cut(s) 458, 481
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 581, 613
AspA2I CCTAGG 1 cut(s) 107
AspLEI GCGC 4 cut(s) 44, 171, 327, 524
AspS9I GGNCC 2 cut(s) 201, 915
AsuHPI GGTGA 4 cut(s) 291, 598, 733, 863
AvaI CYCGRG 2 cut(s) 361, 449
AvaII GGWCC 2 cut(s) 201, 915
AvrII CCTAGG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 362
BauI CACGAG 1 cut(s) 562
BbsI GAAGAC 2 cut(s) 267, 408
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 9 cut(s) 51, 173, 230, 319, 322, 363, 691, 709, 853
BceAI ACGGC 9 cut(s) 83, 393, 397, 405, 580, 591, 619, 780, 820
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 3 cut(s) 570, 853, 886
BcoDI GTCTC 4 cut(s) 48, 409, 634, 941
BfaI CTAG 1 cut(s) 108
BfoI RGCGCY 2 cut(s) 45, 525
BglI GCCNNNNNGGC 1 cut(s) 640
BlnI CCTAGG 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 2 cut(s) 201, 915
BmeRI GACNNNNNGTC 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 361, 449
BmgBI CACGTC 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 201, 915
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 1 cut(s) 720
BmuI ACTGGG 1 cut(s) 927
BpiI GAAGAC 2 cut(s) 267, 408
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 2 cut(s) 516, 919
Bpu10I CCTNAGC 1 cut(s) 768
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 2 cut(s) 48, 409
BsaJI CCNNGG 2 cut(s) 107, 525
BsaWI WCCGGW 2 cut(s) 57, 743
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 892, 922
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 655, 659
Bse118I RCCGGY 5 cut(s) 292, 652, 659, 844, 848
Bse1I ACTGG 4 cut(s) 203, 688, 902, 933
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 107, 525
BseLI CCNNNNNNNGG 3 cut(s) 236, 655, 659
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 4 cut(s) 203, 688, 902, 933
BseRI GAGGAG 5 cut(s) 513, 571, 825, 828, 831
BseSI GKGCMC 1 cut(s) 107
BseX3I CGGCCG 3 cut(s) 68, 657, 846
BseXI GCAGC 9 cut(s) 51, 173, 230, 319, 322, 363, 691, 709, 853
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 169, 479
Bsh1285I CGRYCG 4 cut(s) 21, 71, 660, 849
BshFI GGCC 8 cut(s) 70, 95, 296, 380, 578, 643, 659, 848
BsiEI CGRYCG 4 cut(s) 21, 71, 660, 849
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 2 cut(s) 361, 449
BslFI GGGAC 2 cut(s) 212, 432
BslI CCNNNNNNNGG 3 cut(s) 236, 655, 659
BsmAI GTCTC 4 cut(s) 48, 409, 634, 941
BsmBI CGTCTC 1 cut(s) 634
BsmFI GGGAC 2 cut(s) 212, 432
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 8 cut(s) 70, 95, 296, 380, 578, 643, 659, 848
Bso31I GGTCTC 2 cut(s) 48, 409
BsoBI CYCGRG 2 cut(s) 361, 449
Bsp1286I GDGCHC 2 cut(s) 107, 362
Bsp143I GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
BspANI GGCC 8 cut(s) 70, 95, 296, 380, 578, 643, 659, 848
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 2 cut(s) 169, 479
BspLI GGNNCC 1 cut(s) 502
BspPI GGATC 1 cut(s) 765
BspTNI GGTCTC 2 cut(s) 48, 409
BsrFI RCCGGY 5 cut(s) 292, 652, 659, 844, 848
BsrI ACTGG 4 cut(s) 203, 688, 902, 933
BssAI RCCGGY 5 cut(s) 292, 652, 659, 844, 848
BssECI CCNNGG 2 cut(s) 107, 525
BssMI GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 883
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 294, 323, 334, 846
BstDEI CTNAG 1 cut(s) 768
BstDSI CCRYGG 1 cut(s) 525
BstFNI CGCG 2 cut(s) 169, 479
BstH2I RGCGCY 2 cut(s) 45, 525
BstHHI GCGC 4 cut(s) 44, 171, 327, 524
BstKTI GATC 7 cut(s) 21, 573, 760, 856, 871, 889, 922
BstMAI GTCTC 4 cut(s) 48, 409, 634, 941
BstMBI GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
BstMCI CGRYCG 4 cut(s) 21, 71, 660, 849
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 2 cut(s) 169, 479
BstV1I GCAGC 9 cut(s) 51, 173, 230, 319, 322, 363, 691, 709, 853
BstV2I GAAGAC 2 cut(s) 267, 408
BstZI CGGCCG 3 cut(s) 68, 657, 846
BsuRI GGCC 8 cut(s) 70, 95, 296, 380, 578, 643, 659, 848
BtgI CCRYGG 1 cut(s) 525
BtrI CACGTC 1 cut(s) 592
BtsIMutI CAGTG 3 cut(s) 695, 789, 917
Cac8I GCNNGC 4 cut(s) 294, 323, 334, 846
CaiI CAGNNNCTG 1 cut(s) 724
CfoI GCGC 4 cut(s) 44, 171, 327, 524
Cfr10I RCCGGY 5 cut(s) 292, 652, 659, 844, 848
Cfr13I GGNCC 2 cut(s) 201, 915
CseI GACGC 1 cut(s) 202
CspCI CAANNNNNGTGG 4 cut(s) 514, 549, 671, 706
CviAII CATG 1 cut(s) 508
DdeI CTNAG 1 cut(s) 768
DpnI GATC 7 cut(s) 20, 572, 759, 855, 870, 888, 921
DpnII GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
DrdI GACNNNNNNGTC 1 cut(s) 626
DriI GACNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 4 cut(s) 68, 378, 657, 846
EagI CGGCCG 3 cut(s) 68, 657, 846
Eam1105I GACNNNNNGTC 1 cut(s) 13
EciI GGCGGA 3 cut(s) 66, 252, 822
Ecl136II GAGCTC 1 cut(s) 360
EclXI CGGCCG 3 cut(s) 68, 657, 846
Eco130I CCWWGG 1 cut(s) 107
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 362
Eco31I GGTCTC 2 cut(s) 48, 409
Eco47I GGWCC 2 cut(s) 201, 915
Eco52I CGGCCG 3 cut(s) 68, 657, 846
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 746
Eco88I CYCGRG 2 cut(s) 361, 449
EcoICRI GAGCTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 1 cut(s) 511
FaiI YATR 2 cut(s) 509, 895
FaqI GGGAC 2 cut(s) 212, 432
FatI CATG 1 cut(s) 507
FbaI TGATCA 3 cut(s) 570, 853, 886
FriOI GRGCYC 1 cut(s) 362
FspBI CTAG 1 cut(s) 108
GlaI GCGC 4 cut(s) 43, 170, 326, 523
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 2 cut(s) 516, 919
HaeII RGCGCY 2 cut(s) 45, 525
HaeIII GGCC 8 cut(s) 70, 95, 296, 380, 578, 643, 659, 848
HgaI GACGC 1 cut(s) 202
HhaI GCGC 4 cut(s) 44, 171, 327, 524
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 1 cut(s) 511
Hin6I GCGC 4 cut(s) 42, 169, 325, 522
HinP1I GCGC 4 cut(s) 42, 169, 325, 522
HinfI GANTC 3 cut(s) 116, 452, 901
HphI GGTGA 4 cut(s) 291, 598, 733, 863
Hpy166II GTNNAC 1 cut(s) 915
Hpy188I TCNGA 3 cut(s) 23, 547, 762
Hpy188III TCNNGA 5 cut(s) 370, 449, 562, 719, 923
Hpy8I GTNNAC 1 cut(s) 915
Hpy99I CGWCG 4 cut(s) 236, 292, 397, 593
HpyCH4III ACNGT 1 cut(s) 883
HpyCH4IV ACGT 2 cut(s) 225, 591
HpyCH4V TGCA 3 cut(s) 4, 180, 679
HpyF3I CTNAG 1 cut(s) 768
HpySE526I ACGT 2 cut(s) 225, 591
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 1 cut(s) 511
HspAI GCGC 4 cut(s) 42, 169, 325, 522
KroI GCCGGC 2 cut(s) 292, 844
KroNI GCCGGC 2 cut(s) 294, 846
Ksp22I TGATCA 3 cut(s) 570, 853, 886
Kzo9I GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
LmnI GCTCC 4 cut(s) 341, 500, 555, 694
Lsp1109I GCAGC 9 cut(s) 51, 173, 230, 319, 322, 363, 691, 709, 853
LweI GCATC 1 cut(s) 720
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 225, 591
MalI GATC 7 cut(s) 20, 572, 759, 855, 870, 888, 921
MboI GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
MboII GAAGA 8 cut(s) 267, 270, 273, 276, 408, 422, 454, 739
MhlI GDGCHC 2 cut(s) 107, 362
MluCI AATT 4 cut(s) 343, 458, 481, 531
MlyI GAGTC 3 cut(s) 110, 461, 910
MroNI GCCGGC 2 cut(s) 292, 844
MspR9I CCNGG 1 cut(s) 92
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 2 cut(s) 169, 479
NaeI GCCGGC 2 cut(s) 294, 846
NdeII GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
NgoMIV GCCGGC 2 cut(s) 292, 844
NlaIII CATG 1 cut(s) 511
NlaIV GGNNCC 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 361
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 4 cut(s) 368, 483, 581, 624
PctI GAATGC 1 cut(s) 756
PdiI GCCGGC 2 cut(s) 294, 846
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 3 cut(s) 110, 460, 909
PpsI GAGTC 3 cut(s) 110, 460, 909
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 2 cut(s) 201, 915
PspXI VCTCGAGB 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 724
PvuI CGATCG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 362
Sau3AI GATC 7 cut(s) 18, 570, 757, 853, 868, 886, 919
Sau96I GGNCC 2 cut(s) 201, 915
SchI GAGTC 3 cut(s) 110, 461, 910
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 2 cut(s) 107, 362
SfaNI GCATC 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 361
SinI GGWCC 2 cut(s) 201, 915
SlaI CTCGAG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 343, 458, 481, 531
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 362
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 883
TaiI ACGT 2 cut(s) 228, 594
TaqI TCGA 6 cut(s) 17, 362, 419, 486, 513, 584
TaqII GACCGA 1 cut(s) 932
TasI AATT 4 cut(s) 343, 458, 481, 531
TauI GCSGC 9 cut(s) 73, 169, 192, 195, 213, 307, 412, 494, 659
TscAI CASTG 3 cut(s) 695, 789, 917
TseI GCWGC 9 cut(s) 39, 186, 243, 307, 310, 351, 679, 697, 841
TspGWI ACGGA 3 cut(s) 410, 542, 616
TspRI CASTG 3 cut(s) 695, 789, 917
VpaK11BI GGWCC 2 cut(s) 201, 915
XapI RAATTY 2 cut(s) 458, 481
XhoI CTCGAG 1 cut(s) 361
XmaJI CCTAGG 1 cut(s) 107
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.