Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015444

Physical Location & Seq

Genomic Coordinates Reverse (-)

30008141 .. 30009118

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1216800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCAAGACATTTATTCAGTGAGAGGAGGAGGGAGGTTCTTCGGCGGCTCGGGAGGAGGAGACCGGCGGCTGAGGCCGCACCAGCACCCCAACCAGCAGGCCTTGAAGTGCCCGCGGTGCGATTCTCTCCACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGTAAGGCCTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCAGTCGGCGGTGGATGTCGCAAAACTAAACGCTCCAAGCCGAAAAATTCATCTTCGTCATCGCCGACATCGTCTCCGCCTCCTCCTCCGCCGCAACCGAACAGCGCCGATCAGAACAAATCCAGCTCTCATTCGAGCAGCGAGAGCTCGAGCCTCACCAACCCCACCGCCGCCGCCGCTACTGCCGTCACGGAGGCCGTCTCAGCGCCGTCTTCGACCGGCTCTGCTTCCAATTTACTGACCAATATTCATAATCCGGAATCCAAATTCTTCGTTTCTCAAGGCGGCGCGAACGGTGGCTTTGAGCCCAGCACGTCGGCGGCGGCGCTGCTGGAGCAGATTACGGAGATTAACGGATTGTTCTCGGAGATTGGGAGCTTCACGAGCTTGATCACGTCTTCCAACGACGTGCCGTTTAGTTTCGGGAACATCAACGGCTCGCCGTTTGATCAGCCAGCCCAAGTTGGTAATCATCATCACAATCAAGTTCATCAAAACCAATGGGGGCAGCAGAACCAGGAAGGGAAGATGCAGGAGATCAGTGGTGGATTGCTGGATCAGACGGCGCAGGTCGATCTATCAGTGTTCCAAAACAGATCCAACGGCGTCGGAGGAGGAGAATTTGGACCGTTGGATTGGCAACCGGGATCAGTTGATCAAGGTTTGTTTGATCTTCCTAACACCGTAGACTGGAGTCAAGGTCAATGGGCTGATCAAGACCACCCTACTCTCTACCTCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

326

Amino Acids

34.86

Weight (kDa)

7.16

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	33 - 89	2.4e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60850
fragaria_vesca	FvH4_5g13390
malus_domestica	MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica	Prupe.5G210200_v2.0.a1
pyrus_communis	pycom06g18370 pycom14g17960
rosa_chinensis	RchiOBHm_Chr7g0183751
rosa_laevigata	RLG00000005026
rosa_multiflora	Rmu_sc0003610.1_g000031
rosa_rugosa	Rorug06G0460000
rosa_samantha	Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana	Rw7G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	921
AccII	CGCG	2 cut(s)	115, 524
AccIII	TCCGGA	1 cut(s)	490
AclWI	GGATC	3 cut(s)	798, 825, 889
AcsI	RAATTY	3 cut(s)	280, 500, 854
AcyI	GRCGYC	2 cut(s)	219, 840
AfiI	CCNNNNNNNGG	2 cut(s)	242, 924
AgsI	TTSAA	1 cut(s)	106
AjiI	CACGTC	3 cut(s)	549, 630, 643
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	4 cut(s)	360, 381, 612, 621
AluI	AGCT	4 cut(s)	360, 381, 612, 621
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	3 cut(s)	54, 312, 439
AlwI	GGATC	3 cut(s)	798, 825, 889
Ama87I	CYCGRG	2 cut(s)	49, 382
Aor13HI	TCCGGA	1 cut(s)	490
AoxI	GGCC	4 cut(s)	74, 99, 189, 429
ApeKI	GCWGC	3 cut(s)	372, 562, 742
ApoI	RAATTY	3 cut(s)	280, 500, 854
AspLEI	GCGC	5 cut(s)	341, 442, 524, 562, 802
AspS9I	GGNCC	2 cut(s)	207, 860
AsuC2I	CCSGG	1 cut(s)	879
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	2 cut(s)	49, 382
AvaII	GGWCC	2 cut(s)	207, 860
BaeGI	GKGCMC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	383, 543
BauI	CACGAG	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	438, 624
Bbv12I	GWGCWC	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	384, 549, 754
BceAI	ACGGC	8 cut(s)	404, 416, 427, 631, 661, 685, 813, 853
BciT130I	CCWGG	1 cut(s)	752
BclI	TGATCA	4 cut(s)	624, 682, 889, 946
BcnI	CCSGG	1 cut(s)	879
BcoDI	GTCTC	3 cut(s)	54, 312, 439
BfoI	RGCGCY	3 cut(s)	342, 443, 563
BfuAI	ACCTGC	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	752, 879
Bme18I	GGWCC	2 cut(s)	207, 860
BmeT110I	CYCGRG	2 cut(s)	49, 382
BmgBI	CACGTC	3 cut(s)	549, 630, 643
BmgT120I	GGNCC	2 cut(s)	207, 860
BmrFI	CCNGG	2 cut(s)	752, 879
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	753
BmuI	ACTGGG	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	927
BpiI	GAAGAC	2 cut(s)	438, 624
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpmI	CTGGAG	2 cut(s)	587, 946
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	879
BsaHI	GRCGYC	2 cut(s)	219, 840
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	113, 210
BsaWI	WCCGGW	1 cut(s)	490
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 292, 322, 919, 949
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 924
Bse118I	RCCGGY	2 cut(s)	63, 452
Bse1I	ACTGG	3 cut(s)	209, 236, 929
BseAI	TCCGGA	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	2 cut(s)	113, 210
BseGI	GGATG	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	242, 924
BseMII	CTCAG	2 cut(s)	62, 450
BseNI	ACTGG	3 cut(s)	209, 236, 929
BseRI	GAGGAG	8 cut(s)	39, 42, 69, 72, 306, 309, 861, 864
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	384, 549, 754
BseYI	CCCAGC	2 cut(s)	168, 542
Bsh1236I	CGCG	2 cut(s)	115, 524
Bsh1285I	CGRYCG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	76, 101, 191, 431
BsiEI	CGRYCG	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	383
BsiHKCI	CYCGRG	2 cut(s)	49, 382
BsiSI	CCGG	4 cut(s)	64, 453, 491, 878
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	242, 924
BsmAI	GTCTC	3 cut(s)	54, 312, 439
BsmBI	CGTCTC	2 cut(s)	312, 439
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	4 cut(s)	76, 101, 191, 431
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	2 cut(s)	49, 382
Bsp1286I	GDGCHC	3 cut(s)	113, 383, 543
Bsp13I	TCCGGA	1 cut(s)	490
BspANI	GGCC	4 cut(s)	76, 101, 191, 431
BspCNI	CTCAG	2 cut(s)	63, 449
BspEI	TCCGGA	1 cut(s)	490
BspFNI	CGCG	2 cut(s)	115, 524
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	3 cut(s)	798, 825, 889
BspTNI	GGTCTC	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	63, 452
BsrI	ACTGG	3 cut(s)	209, 236, 929
BssAI	RCCGGY	2 cut(s)	63, 452
BssECI	CCNNGG	2 cut(s)	113, 210
BssNI	GRCGYC	2 cut(s)	219, 840
BssSI	CACGAG	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	3 cut(s)	530, 864, 919
BstACI	GRCGYC	2 cut(s)	219, 840
BstC8I	GCNNGC	5 cut(s)	99, 113, 193, 674, 690
BstDEI	CTNAG	2 cut(s)	71, 436
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	2 cut(s)	115, 524
BstH2I	RGCGCY	3 cut(s)	342, 443, 563
BstHHI	GCGC	5 cut(s)	341, 442, 524, 562, 802
BstMAI	GTCTC	3 cut(s)	54, 312, 439
BstMCI	CGRYCG	1 cut(s)	453
BstNI	CCWGG	1 cut(s)	752
BstPAI	GACNNNNGTC	1 cut(s)	927
BstSCI	CCNGG	2 cut(s)	750, 877
BstSLI	GKGCMC	1 cut(s)	113
BstUI	CGCG	2 cut(s)	115, 524
BstV1I	GCAGC	3 cut(s)	384, 549, 754
BstV2I	GAAGAC	2 cut(s)	438, 624
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	4 cut(s)	76, 101, 191, 431
BtgI	CCRYGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	279
BtrI	CACGTC	3 cut(s)	549, 630, 643
BtsCI	GGATG	1 cut(s)	254
BtsIMutI	CAGTG	3 cut(s)	24, 781, 822
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	5 cut(s)	99, 113, 193, 674, 690
CfoI	GCGC	5 cut(s)	341, 442, 524, 562, 802
Cfr10I	RCCGGY	2 cut(s)	63, 452
Cfr13I	GGNCC	2 cut(s)	207, 860
Cfr42I	CCGCGG	1 cut(s)	116
CseI	GACGC	2 cut(s)	208, 829
DdeI	CTNAG	2 cut(s)	71, 436
EciI	GGCGGA	2 cut(s)	300, 312
Ecl136II	GAGCTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	2 cut(s)	101, 191
Eco24I	GRGCYC	2 cut(s)	383, 543
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	207, 860
Eco53kI	GAGCTC	1 cut(s)	381
Eco88I	CYCGRG	2 cut(s)	49, 382
EcoICRI	GAGCTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	2 cut(s)	383, 543
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	2 cut(s)	312, 439
FaiI	YATR	1 cut(s)	486
FaqI	GGGAC	1 cut(s)	218
FauI	CCCGC	2 cut(s)	120, 182
FbaI	TGATCA	4 cut(s)	624, 682, 889, 946
FblI	GTMKAC	1 cut(s)	921
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	383, 543
GlaI	GCGC	5 cut(s)	340, 441, 523, 561, 801
GsaI	CCCAGC	2 cut(s)	172, 546
GsuI	CTGGAG	2 cut(s)	587, 946
HaeII	RGCGCY	3 cut(s)	342, 443, 563
HaeIII	GGCC	4 cut(s)	76, 101, 191, 431
HapII	CCGG	4 cut(s)	64, 453, 491, 878
HgaI	GACGC	2 cut(s)	208, 829
HhaI	GCGC	5 cut(s)	341, 442, 524, 562, 802
Hin1I	GRCGYC	2 cut(s)	219, 840
Hin6I	GCGC	5 cut(s)	339, 440, 522, 560, 800
HinP1I	GCGC	5 cut(s)	339, 440, 522, 560, 800
HinfI	GANTC	3 cut(s)	122, 494, 928
HpaII	CCGG	4 cut(s)	64, 453, 491, 878
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	922
Hpy188I	TCNGA	4 cut(s)	348, 601, 795, 845
Hpy188III	TCNNGA	5 cut(s)	51, 491, 616, 658, 950
Hpy8I	GTNNAC	1 cut(s)	922
Hpy99I	CGWCG	3 cut(s)	553, 644, 845
HpyAV	CCTTC	1 cut(s)	749
HpyCH4III	ACNGT	3 cut(s)	530, 864, 919
HpyCH4IV	ACGT	4 cut(s)	231, 548, 629, 642
HpyCH4V	TGCA	2 cut(s)	4, 766
HpyF3I	CTNAG	2 cut(s)	71, 436
HpySE526I	ACGT	4 cut(s)	231, 548, 629, 642
Hsp92I	GRCGYC	2 cut(s)	219, 840
HspAI	GCGC	5 cut(s)	339, 440, 522, 560, 800
Kpn2I	TCCGGA	1 cut(s)	490
Ksp22I	TGATCA	4 cut(s)	624, 682, 889, 946
KspI	CCGCGG	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	272, 568, 609
Lsp1109I	GCAGC	3 cut(s)	384, 549, 754
LweI	GCATC	1 cut(s)	753
MaeII	ACGT	4 cut(s)	231, 548, 629, 642
MaeIII	GTNAC	1 cut(s)	421
MboII	GAAGA	7 cut(s)	31, 279, 438, 496, 624, 772, 899
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	113, 383, 543
MluCI	AATT	4 cut(s)	280, 466, 500, 854
MlyI	GAGTC	1 cut(s)	937
MmeI	TCCRAC	4 cut(s)	660, 823, 846, 858
MroI	TCCGGA	1 cut(s)	490
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	4 cut(s)	64, 453, 491, 878
MspR9I	CCNGG	2 cut(s)	752, 879
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	2 cut(s)	115, 524
NciI	CCSGG	1 cut(s)	879
NmuCI	GTSAC	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	382
PceI	AGGCCT	2 cut(s)	101, 191
PcsI	WCGNNNNNNNCGW	2 cut(s)	296, 302
PfeI	GAWTC	2 cut(s)	122, 494
PflFI	GACNNNGTC	1 cut(s)	304
PleI	GAGTC	1 cut(s)	936
PpsI	GAGTC	1 cut(s)	936
PshAI	GACNNNNGTC	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	750
PspFI	CCCAGC	2 cut(s)	168, 542
PspGI	CCWGG	1 cut(s)	750
PspPI	GGNCC	2 cut(s)	207, 860
PspXI	VCTCGAGB	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	830
PsyI	GACNNNGTC	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	383
SacII	CCGCGG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	585
Sau96I	GGNCC	2 cut(s)	207, 860
SchI	GAGTC	1 cut(s)	937
ScrFI	CCNGG	2 cut(s)	752, 879
SduI	GDGCHC	3 cut(s)	113, 383, 543
SfaNI	GCATC	1 cut(s)	753
Sfr274I	CTCGAG	1 cut(s)	382
Sfr303I	CCGCGG	1 cut(s)	116
SgrBI	CCGCGG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	207, 860
SlaI	CTCGAG	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	382, 513
SmoI	CTYRAG	2 cut(s)	382, 513
Sse9I	AATT	4 cut(s)	280, 466, 500, 854
SseBI	AGGCCT	2 cut(s)	101, 191
SspI	AATATT	1 cut(s)	481
SstI	GAGCTC	1 cut(s)	383
StuI	AGGCCT	2 cut(s)	101, 191
StyD4I	CCNGG	2 cut(s)	750, 877
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	530, 864, 919
TaiI	ACGT	4 cut(s)	234, 551, 632, 645
TaqI	TCGA	4 cut(s)	368, 383, 449, 807
TasI	AATT	4 cut(s)	280, 466, 500, 854
TfiI	GAWTC	2 cut(s)	122, 494
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	3 cut(s)	24, 781, 822
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	3 cut(s)	372, 562, 742
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	273, 473, 713
TspGWI	ACGGA	3 cut(s)	440, 593, 603
TspRI	CASTG	3 cut(s)	24, 781, 822
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	207, 860
XapI	RAATTY	3 cut(s)	280, 500, 854
XhoI	CTCGAG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.