Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015444

Physical Location & Seq

Genomic Coordinates Reverse (-)

16714120 .. 16715100

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAAGACATTCATTCAGTGGGAGGAGCGAGGTTCTTCGCAGGCTCAGGAGGAGGAGGAGGGGATAGGAGGCTGAGGCCCCACCACCACCCGAACCAGCAGGCCTTGAAGTGCCCAAGGTGCGACTCTCTTAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCACTTCTGTAAGTCCTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTTGGTGGCGGCTGCCGCAAAACCAAACGCTCCAAGCCCAAATCCTCGTCCTCCTTATCGCCGCCGCCACCGCCGCCGCAGCTGAACAGTGCTACTGATCAGCACAAAGCCAGCTCTCATTCGAGCAGCGAGAGCTCTAGCCTCACCAACACCACCACCGCAGCCGCGGCCGCCGCGACGGCCACGGAGGCGGTTTCGGCGCCGTCTTCGACTGGCTCGGCTTCCAACCTGTTGAGTAATATTCATCGTCAGGAGTCGAAATTCTTCGGTTCTCAAAGCGGTGGCTTCGAGCCTGGTGCTGAGGCAGCGTTGCTTGAGCAGAGTACGGAGATGAATGGAATGTTCTCGGAGATTGGAAGCTTCACGAGCTTGATCACGTCGTCCAACGACGTGCCGTTTGGTTTCGGTAACATCGGCGGCACCGACGCTTCGGTTTCGCCGTTTAGGGTGAATCAGCAAGCGCAAGGGGATCATCAGAATCAATGGGCTGAGCAGAACCAGAGCGAGGAATTGAAGATGCAGGAATTGAGTGGGGGATTGATGGATCAGACGGGTCAGGTGGATTTATCAGTGTACCATGGCAGATCCAACGGCGGAGGAGGAGGAGTATTTGGATCGTTGGATTGGCAAGCGTGTTCAGGGGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAAGCATATTGGAGTCAGAGTCAATGGACTGATCAAGACCACCCTACGCTCTACCTCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

327

Amino Acids

34.84

Weight (kDa)

6.59

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60850
fragaria_vesca	FvH4_5g13390
malus_domestica	MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica	Prupe.5G210200_v2.0.a1
pyrus_communis	pycom06g18370 pycom14g17960
rosa_chinensis	RchiOBHm_Chr7g0183751
rosa_laevigata	RLG00000005026
rosa_multiflora	Rmu_sc0003610.1_g000031
rosa_rugosa	Rorug06G0460000
rosa_samantha	Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana	Rw7G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	439, 659
AccII	CGCG	2 cut(s)	407, 416
AclWI	GGATC	5 cut(s)	717, 792, 819, 862, 891
AcoI	YGGCCR	2 cut(s)	408, 420
AcsI	RAATTY	1 cut(s)	500
AcyI	GRCGYC	2 cut(s)	222, 440
AfaI	GTAC	2 cut(s)	565, 815
AfiI	CCNNNNNNNGG	2 cut(s)	245, 745
AgsI	TTSAA	2 cut(s)	109, 754
AjiI	CACGTC	2 cut(s)	618, 631
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	5 cut(s)	322, 354, 375, 600, 609
AluI	AGCT	5 cut(s)	322, 354, 375, 600, 609
Alw21I	GWGCWC	1 cut(s)	377
AlwI	GGATC	5 cut(s)	717, 792, 819, 862, 891
AoxI	GGCC	4 cut(s)	77, 102, 408, 420
ApeKI	GCWGC	5 cut(s)	252, 319, 366, 401, 545
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	4 cut(s)	207, 239, 620, 652
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	442, 703
AspS9I	GGNCC	2 cut(s)	78, 210
AsuHPI	GGTGA	2 cut(s)	376, 700
AvaII	GGWCC	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	2 cut(s)	439, 659
BanII	GRGCYC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	604
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	377
BbvCI	CCTCAGC	2 cut(s)	74, 540
BbvI	GCAGC	5 cut(s)	239, 331, 378, 413, 557
BccI	CCATC	1 cut(s)	775
BceAI	ACGGC	5 cut(s)	427, 435, 619, 664, 847
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	534
BclI	TGATCA	4 cut(s)	337, 612, 916, 949
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	443
BglI	GCCNNNNNGGC	2 cut(s)	419, 428
BlpI	GCTNAGC	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	210
BmgBI	CACGTC	2 cut(s)	618, 631
BmgT120I	GGNCC	2 cut(s)	78, 210
BmiI	GGNNCC	3 cut(s)	80, 441, 661
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	1 cut(s)	747
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	3 cut(s)	46, 74, 540
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	575
BsaHI	GRCGYC	2 cut(s)	222, 440
BsaJI	CCNNGG	4 cut(s)	116, 405, 423, 817
BsaXI	ACNNNNNCTCC	4 cut(s)	831, 861, 922, 952
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 745
Bse1I	ACTGG	2 cut(s)	212, 457
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	4 cut(s)	116, 405, 423, 817
BseLI	CCNNNNNNNGG	2 cut(s)	245, 745
BseMII	CTCAG	5 cut(s)	60, 65, 185, 531, 720
BseNI	ACTGG	2 cut(s)	212, 457
BseRI	GAGGAG	7 cut(s)	39, 66, 69, 72, 852, 855, 858
BseSI	GKGCMC	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	408
BseXI	GCAGC	5 cut(s)	239, 331, 378, 413, 557
Bsh1236I	CGCG	2 cut(s)	407, 416
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	79, 104, 410, 422
BshNI	GGYRCC	2 cut(s)	439, 659
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	245, 745
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	79, 104, 410, 422
Bsp1286I	GDGCHC	2 cut(s)	116, 377
Bsp1720I	GCTNAGC	1 cut(s)	729
Bsp19I	CCATGG	1 cut(s)	817
BspANI	GGCC	4 cut(s)	79, 104, 410, 422
BspCNI	CTCAG	5 cut(s)	59, 66, 184, 532, 721
BspFNI	CGCG	2 cut(s)	407, 416
BspLI	GGNNCC	3 cut(s)	80, 441, 661
BspPI	GGATC	5 cut(s)	717, 792, 819, 862, 891
BspT107I	GGYRCC	2 cut(s)	439, 659
BsrI	ACTGG	2 cut(s)	212, 457
BssECI	CCNNGG	4 cut(s)	116, 405, 423, 817
BssNI	GRCGYC	2 cut(s)	222, 440
BssSI	CACGAG	1 cut(s)	604
BssT1I	CCWWGG	2 cut(s)	116, 817
Bst2BI	CACGAG	1 cut(s)	604
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	329, 913
BstACI	GRCGYC	2 cut(s)	222, 440
BstC8I	GCNNGC	5 cut(s)	43, 102, 352, 699, 870
BstDEI	CTNAG	5 cut(s)	46, 74, 171, 540, 729
BstDSI	CCRYGG	3 cut(s)	405, 423, 817
BstFNI	CGCG	2 cut(s)	407, 416
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	442, 703
BstMCI	CGRYCG	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	2 cut(s)	407, 416
BstV1I	GCAGC	5 cut(s)	239, 331, 378, 413, 557
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	824
BstYI	RGATCY	1 cut(s)	824
BstZI	CGGCCG	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	79, 104, 410, 422
BtgI	CCRYGG	3 cut(s)	405, 423, 817
BtrI	CACGTC	2 cut(s)	618, 631
BtsIMutI	CAGTG	3 cut(s)	24, 334, 816
Cac8I	GCNNGC	5 cut(s)	43, 102, 352, 699, 870
CciNI	GCGGCCGC	1 cut(s)	408
CfoI	GCGC	2 cut(s)	442, 703
Cfr13I	GGNCC	2 cut(s)	78, 210
Cfr42I	CCGCGG	1 cut(s)	408
CseI	GACGC	2 cut(s)	211, 674
Csp6I	GTAC	2 cut(s)	564, 814
CviAII	CATG	1 cut(s)	818
CviQI	GTAC	2 cut(s)	564, 814
DdeI	CTNAG	5 cut(s)	46, 74, 171, 540, 729
DinI	GGCGCC	1 cut(s)	441
EaeI	YGGCCR	2 cut(s)	408, 420
EagI	CGGCCG	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	849
Ecl136II	GAGCTC	1 cut(s)	375
EclXI	CGGCCG	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	116, 817
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	116, 817
EcoT38I	GRGCYC	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	441
EheI	GGCGCC	1 cut(s)	441
ErhI	CCWWGG	2 cut(s)	116, 817
FaeI	CATG	1 cut(s)	821
FaiI	YATR	2 cut(s)	819, 925
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	817
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	4 cut(s)	337, 612, 916, 949
FriOI	GRGCYC	1 cut(s)	377
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	441, 702
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	4 cut(s)	79, 104, 410, 422
HgaI	GACGC	2 cut(s)	211, 674
HhaI	GCGC	2 cut(s)	442, 703
Hin1I	GRCGYC	2 cut(s)	222, 440
Hin1II	CATG	1 cut(s)	821
Hin6I	GCGC	2 cut(s)	440, 701
HinP1I	GCGC	2 cut(s)	440, 701
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	6 cut(s)	125, 494, 691, 718, 931, 937
HphI	GGTGA	2 cut(s)	376, 700
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	4 cut(s)	589, 717, 789, 936
Hpy188III	TCNNGA	4 cut(s)	48, 491, 604, 953
Hpy8I	GTNNAC	1 cut(s)	814
Hpy99I	CGWCG	4 cut(s)	421, 622, 632, 668
HpyCH4III	ACNGT	2 cut(s)	329, 913
HpyCH4IV	ACGT	3 cut(s)	234, 617, 630
HpyCH4V	TGCA	2 cut(s)	4, 760
HpyF3I	CTNAG	5 cut(s)	46, 74, 171, 540, 729
HpySE526I	ACGT	3 cut(s)	234, 617, 630
Hsp92I	GRCGYC	2 cut(s)	222, 440
Hsp92II	CATG	1 cut(s)	821
HspAI	GCGC	2 cut(s)	440, 701
KasI	GGCGCC	1 cut(s)	439
Ksp22I	TGATCA	4 cut(s)	337, 612, 916, 949
KspI	CCGCGG	1 cut(s)	408
LmnI	GCTCC	2 cut(s)	26, 275
Lsp1109I	GCAGC	5 cut(s)	239, 331, 378, 413, 557
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	3 cut(s)	234, 617, 630
MaeIII	GTNAC	1 cut(s)	647
MboII	GAAGA	5 cut(s)	28, 438, 496, 766, 893
MflI	RGATCY	1 cut(s)	824
MhlI	GDGCHC	2 cut(s)	116, 377
MluCI	AATT	3 cut(s)	500, 749, 764
Mly113I	GGCGCC	1 cut(s)	440
MlyI	GAGTC	4 cut(s)	119, 503, 940, 946
MmeI	TCCRAC	4 cut(s)	489, 648, 840, 852
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	322, 407
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	2 cut(s)	407, 416
NarI	GGCGCC	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	817
NlaIII	CATG	1 cut(s)	821
NlaIV	GGNNCC	3 cut(s)	80, 441, 661
NmeAIII	GCCGAG	1 cut(s)	437
NotI	GCGGCCGC	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	660, 677
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	691, 718
PleI	GAGTC	4 cut(s)	119, 502, 939, 945
PluTI	GGCGCC	1 cut(s)	443
PpsI	GAGTC	4 cut(s)	119, 502, 939, 945
Psp124BI	GAGCTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	80, 441, 661
PspPI	GGNCC	2 cut(s)	78, 210
PsuI	RGATCY	1 cut(s)	824
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	565, 815
RsaNI	GTAC	2 cut(s)	564, 814
SacI	GAGCTC	1 cut(s)	377
SacII	CCGCGG	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	132
Sau96I	GGNCC	2 cut(s)	78, 210
SchI	GAGTC	4 cut(s)	119, 503, 940, 946
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	116, 377
SfaNI	GCATC	1 cut(s)	747
SfoI	GGCGCC	1 cut(s)	441
Sfr303I	CCGCGG	1 cut(s)	408
SgrBI	CCGCGG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	3 cut(s)	500, 749, 764
SseBI	AGGCCT	1 cut(s)	104
SspDI	GGCGCC	1 cut(s)	439
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	377
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	116, 817
TaaI	ACNGT	2 cut(s)	329, 913
TaiI	ACGT	3 cut(s)	237, 620, 633
TaqI	TCGA	4 cut(s)	362, 449, 497, 528
TasI	AATT	3 cut(s)	500, 749, 764
TfiI	GAWTC	2 cut(s)	691, 718
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	24, 334, 816
TseI	GCWGC	5 cut(s)	252, 319, 366, 401, 545
TspDTI	ATGAA	2 cut(s)	473, 587
TspGWI	ACGGA	2 cut(s)	440, 581
TspRI	CASTG	3 cut(s)	24, 334, 816
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.