Rorug06G0460000

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003016
Physical Location & Seq
Forward (+)
58658005 .. 58661336
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0460000.1

Sequence Viewer

Length: 591 bp
ATGTTTGGTTCATTAAGAATTTCTTCCCAGAATCCAAGAAAGCAGCAGAAGCAAGAACGAGAATGGTTAAACTTGAGTTTTAAGCCAGAGAATTTCCTTCCAGGAGTTGTCATTGGCTTCATTCTTGGGTTGTTGTTGGATTTATCACAACCTGGTAAGGGTTCCTTGAAGTTGAAGAGGAAAAATTTCTCGGAGGGAAAGCCCCAACAGCGAAGTTTGGTCTCGACTAATGGTGATGAAGAGCTTAAAATGGTTCTTGTAGTTAGACGAGACTTAAAGATGACAACTGGAAAAATCGCATCTCAGTGTGCTCATGCTGCCACTGGCATGTATGCAGAACTGATGCAAAGCCATAGGTCCCTTTTGAGACAATGGGAGGAAAATGGGCAACCCAAAATAGTGGTTACATGCAAGAATCAACAAGAAATGAATAAGCTGAAAGAAGCAGCTGAGGGCATTGGCCTTCCAACTTTTGTTGTCGCTGATGCAGGGCGAACACAGGTTGTGAGTGGGTCAAAGACAGTTCTTGCCGTTGGACCAGGACCAAAAGAAGTGGTAGATTCAGTGACAGGGAAACAGGGTCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

196

Amino Acids

21.51

Weight (kDa)

9.79

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 82 - 193 5.7e-44 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 18, 91, 184
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 169, 175
AjnI CCWGG 3 cut(s) 100, 151, 538
AluBI AGCT 3 cut(s) 244, 436, 449
AluI AGCT 3 cut(s) 244, 436, 449
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 4 cut(s) 226, 264, 361, 587
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 3 cut(s) 43, 317, 446
ApoI RAATTY 3 cut(s) 18, 91, 184
Asp700I GAANNNNTTC 2 cut(s) 22, 185
AspS9I GGNCC 3 cut(s) 357, 536, 542
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 3 cut(s) 357, 536, 542
Bbv12I GWGCWC 1 cut(s) 313
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 55, 304, 458
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 3 cut(s) 102, 153, 540
BcoDI GTCTC 4 cut(s) 226, 264, 361, 587
BisI GCNGC 3 cut(s) 44, 318, 447
BlsI GCNGC 3 cut(s) 45, 319, 448
Bme1390I CCNGG 3 cut(s) 102, 153, 540
Bme18I GGWCC 3 cut(s) 357, 536, 542
BmgT120I GGNCC 3 cut(s) 357, 536, 542
BmiI GGNNCC 2 cut(s) 163, 359
BmrFI CCNGG 3 cut(s) 102, 153, 540
BmsI GCATC 3 cut(s) 308, 333, 475
Bpu10I CCTNAGC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 94
BsaI GGTCTC 2 cut(s) 226, 587
BsaXI ACNNNNNCTCC 1 cut(s) 567
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 292, 328
BseBI CCWGG 3 cut(s) 102, 153, 540
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 317, 441
BseNI ACTGG 2 cut(s) 292, 328
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 3 cut(s) 55, 304, 458
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 313
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 4 cut(s) 226, 264, 361, 587
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 462
Bso31I GGTCTC 2 cut(s) 226, 587
Bsp1286I GDGCHC 1 cut(s) 313
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 316, 442
BspLI GGNNCC 2 cut(s) 163, 359
BspQI GCTCTTC 1 cut(s) 234
BspTNI GGTCTC 2 cut(s) 226, 587
BsrI ACTGG 2 cut(s) 292, 328
Bst2UI CCWGG 3 cut(s) 102, 153, 540
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 2 cut(s) 170, 234
BstDEI CTNAG 2 cut(s) 303, 450
BstMAI GTCTC 4 cut(s) 226, 264, 361, 587
BstMWI GCNNNNNNNGC 3 cut(s) 49, 208, 317
BstNI CCWGG 3 cut(s) 102, 153, 540
BstNSI RCATGY 2 cut(s) 331, 411
BstSCI CCNGG 3 cut(s) 100, 151, 538
BstV1I GCAGC 3 cut(s) 55, 304, 458
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuRI GGCC 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 311, 321, 570
Cfr13I GGNCC 3 cut(s) 357, 536, 542
CsiI ACCWGGT 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviAII CATG 3 cut(s) 314, 328, 408
CviJI RGCY 8 cut(s) 85, 117, 202, 244, 351, 436, 449, 462
CviKI_1 RGCY 8 cut(s) 85, 117, 202, 244, 351, 436, 449, 462
DdeI CTNAG 2 cut(s) 303, 450
Eam1104I CTCTTC 2 cut(s) 170, 234
EarI CTCTTC 2 cut(s) 170, 234
Eco31I GGTCTC 2 cut(s) 226, 587
Eco47I GGWCC 3 cut(s) 357, 536, 542
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 3 cut(s) 100, 151, 538
FaeI CATG 3 cut(s) 317, 331, 411
FaiI YATR 5 cut(s) 315, 329, 333, 354, 409
FalI AAGNNNNNCTT 4 cut(s) 7, 39, 149, 181
FaqI GGGAC 1 cut(s) 343
FatI CATG 3 cut(s) 313, 327, 407
Fnu4HI GCNGC 3 cut(s) 44, 318, 447
Fsp4HI GCNGC 3 cut(s) 44, 318, 447
GluI GCNGC 3 cut(s) 44, 318, 447
HaeIII GGCC 1 cut(s) 462
Hin1II CATG 3 cut(s) 317, 331, 411
HinfI GANTC 3 cut(s) 31, 415, 560
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 193, 590
Hpy188III TCNNGA 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 107, 473
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 4 cut(s) 335, 346, 411, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 208, 317
HpyF3I CTNAG 2 cut(s) 303, 450
Hsp92II CATG 3 cut(s) 317, 331, 411
LguI GCTCTTC 1 cut(s) 234
Lsp1109I GCAGC 3 cut(s) 55, 304, 458
LweI GCATC 3 cut(s) 308, 333, 475
MabI ACCWGGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 403, 565
MboII GAAGA 3 cut(s) 15, 187, 251
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 3 cut(s) 18, 91, 184
MmeI TCCRAC 3 cut(s) 117, 491, 514
MnlI CCTC 4 cut(s) 171, 187, 370, 445
MroXI GAANNNNTTC 2 cut(s) 22, 185
MseI TTAA 5 cut(s) 14, 68, 81, 246, 275
MslI CAYNNNNRTG 2 cut(s) 304, 326
MspA1I CMGCKG 1 cut(s) 449
MspR9I CCNGG 3 cut(s) 102, 153, 540
MvaI CCWGG 3 cut(s) 102, 153, 540
MwoI GCNNNNNNNGC 3 cut(s) 49, 208, 317
NlaIII CATG 3 cut(s) 317, 331, 411
NlaIV GGNNCC 2 cut(s) 163, 359
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 2 cut(s) 331, 411
PciSI GCTCTTC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 22, 185
PfeI GAWTC 3 cut(s) 31, 415, 560
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 3 cut(s) 45, 319, 448
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 3 cut(s) 100, 151, 538
PspGI CCWGG 3 cut(s) 100, 151, 538
PspN4I GGNNCC 2 cut(s) 163, 359
PspPI GGNCC 3 cut(s) 357, 536, 542
PspPPI RGGWCCY 1 cut(s) 357
PvuII CAGCTG 1 cut(s) 449
RseI CAYNNNNRTG 2 cut(s) 304, 326
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 14, 68, 81, 246, 275
SatI GCNGC 3 cut(s) 44, 318, 447
Sau96I GGNCC 3 cut(s) 357, 536, 542
ScrFI CCNGG 3 cut(s) 102, 153, 540
SduI GDGCHC 1 cut(s) 313
SetI ASST 6 cut(s) 154, 246, 359, 438, 451, 504
SexAI ACCWGGT 1 cut(s) 151
SfaNI GCATC 3 cut(s) 308, 333, 475
SinI GGWCC 3 cut(s) 357, 536, 542
SmiMI CAYNNNNRTG 2 cut(s) 304, 326
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 3 cut(s) 18, 91, 184
StyD4I CCNGG 3 cut(s) 100, 151, 538
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 1 cut(s) 224
TasI AATT 3 cut(s) 18, 91, 184
TfiI GAWTC 3 cut(s) 31, 415, 560
Tru1I TTAA 5 cut(s) 14, 68, 81, 246, 275
Tru9I TTAA 5 cut(s) 14, 68, 81, 246, 275
TscAI CASTG 3 cut(s) 311, 328, 570
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 3 cut(s) 43, 317, 446
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 3 cut(s) 109, 252, 443
TspRI CASTG 3 cut(s) 311, 328, 570
VpaK11BI GGWCC 3 cut(s) 357, 536, 542
XapI RAATTY 3 cut(s) 18, 91, 184
XceI RCATGY 2 cut(s) 331, 411
XmnI GAANNNNTTC 2 cut(s) 22, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.