Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Reverse (-)

3927003 .. 3929989

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1056300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAAGACTTGTGGAAGCGAGCCAGGACCTTCGCCGAAGAAGCGGCCAAGAAGTCCCAAACCCTAACCGCCTCCGCCAAGATCACCGACCTGGTCTCCGAAACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCGTCGAAGAAGGCCGACGAGATCAAGACGGCCGCGCTCAAGCAGGCCGATCAGATCAAGTCCCTCTCCGTCTCCGAGATCATTCCTCCCCAGCTCGCCTCGCTCTCGATCGTCAACTCCGCCTCCGCGTCCTCCGCCCCTGAGCCGCCCTCGCCGTCTGAGCTCAGGAAGTTCGGTGTCACCGACGATCTCAGAGATTTTGTCAAGGGACTCACTTCCGACACCTTCAAGCATTTTCCGGTCCAGGATGCGGCGGCGGAGGTCTCCGATGTGCCGACCACGACCTCGAATGTGAGGAAGGATCTGACGGAGTGGCAGGAGCGACATGCAACTTTGGTGCTCACTACTGTTAAGGAAATTTCAAGGCTGAGATATGAATTATGCCCGCGTGTTATGAAAGAAAGAATATTCTGGAAGATATACTTTACCCTTGTGAGCAGTCATGTGGCGCCATATGAGAAGCAATACATGGAGGAATTGAAGGTCAAGGAAGCAGAGAAACTAAAAGATGATATTGTGAAGCCAACACCTGTTGTTGGAGTGACTGACAAAGCAGAAGGATCTGAAAAGAACACAAAGCCTTTAGTTTCCAAATCATCGTCAACTGAGCAGGACTTGGATAGTTTTCTTTTGGGTGATCTTGAAGACAGTGATGGGGGTCCAGATGATGGTGATGATGGTGATGGGAGCTTTGATGATGATTTTGACAAGATTGGCAATTCGGATGTTGAAGATGAGAAGCATGCGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

297

Amino Acids

32.75

Weight (kDa)

4.93

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSD	PF03909	147 - 194	5.7e-11	BSD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AccB7I	CCANNNNNTGG	1 cut(s)	803
AccII	CGCG	4 cut(s)	120, 170, 263, 523
AclWI	GGATC	3 cut(s)	108, 444, 703
AcoI	YGGCCR	2 cut(s)	45, 165
AcsI	RAATTY	1 cut(s)	492
AcyI	GRCGYC	2 cut(s)	137, 584
AfiI	CCNNNNNNNGG	3 cut(s)	385, 671, 803
AgsI	TTSAA	5 cut(s)	364, 498, 616, 779, 866
AjnI	CCWGG	3 cut(s)	23, 90, 378
AluBI	AGCT	3 cut(s)	229, 298, 825
AluI	AGCT	3 cut(s)	229, 298, 825
Alw21I	GWGCWC	2 cut(s)	300, 477
Alw26I	GTCTC	3 cut(s)	100, 211, 403
AlwI	GGATC	3 cut(s)	108, 444, 703
AoxI	GGCC	4 cut(s)	45, 147, 165, 180
ApoI	RAATTY	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	172, 586
AspS9I	GGNCC	3 cut(s)	27, 376, 794
AsuHPI	GGTGA	5 cut(s)	76, 307, 782, 818, 827
AvaII	GGWCC	3 cut(s)	27, 376, 794
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	12, 786
Bbv12I	GWGCWC	2 cut(s)	300, 477
BccI	CCATC	4 cut(s)	782, 797, 806, 812
BceAI	ACGGC	2 cut(s)	180, 274
BciT130I	CCWGG	3 cut(s)	25, 92, 380
BcoDI	GTCTC	3 cut(s)	100, 211, 403
BfoI	RGCGCY	1 cut(s)	587
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 390
BlsI	GCNGC	6 cut(s)	46, 130, 169, 282, 388, 391
Bme1390I	CCNGG	3 cut(s)	25, 92, 380
Bme18I	GGWCC	3 cut(s)	27, 376, 794
BmgT120I	GGNCC	3 cut(s)	27, 376, 794
BmiI	GGNNCC	2 cut(s)	585, 795
BmrFI	CCNGG	3 cut(s)	25, 92, 380
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	12, 786
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	2 cut(s)	276, 299
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	137, 584
BsaI	GGTCTC	2 cut(s)	100, 403
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 671, 803
BseBI	CCWGG	3 cut(s)	25, 92, 380
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	388, 865
BseLI	CCNNNNNNNGG	3 cut(s)	385, 671, 803
BseMII	CTCAG	6 cut(s)	267, 285, 313, 340, 494, 732
BseX3I	CGGCCG	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	4 cut(s)	120, 170, 263, 523
Bsh1285I	CGRYCG	2 cut(s)	168, 246
BshFI	GGCC	4 cut(s)	47, 149, 167, 182
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	2 cut(s)	168, 246
BsiHKAI	GWGCWC	2 cut(s)	300, 477
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	3 cut(s)	40, 181, 357
BslI	CCNNNNNNNGG	3 cut(s)	385, 671, 803
BsmAI	GTCTC	3 cut(s)	100, 211, 403
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	3 cut(s)	40, 181, 357
BsnI	GGCC	4 cut(s)	47, 149, 167, 182
Bso31I	GGTCTC	2 cut(s)	100, 403
Bsp1286I	GDGCHC	2 cut(s)	300, 477
BspANI	GGCC	4 cut(s)	47, 149, 167, 182
BspCNI	CTCAG	6 cut(s)	268, 286, 312, 339, 495, 733
BspFNI	CGCG	4 cut(s)	120, 170, 263, 523
BspLI	GGNNCC	2 cut(s)	585, 795
BspPI	GGATC	3 cut(s)	108, 444, 703
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	2 cut(s)	100, 403
BssECI	CCNNGG	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	137, 584
Bst2UI	CCWGG	3 cut(s)	25, 92, 380
Bst4CI	ACNGT	2 cut(s)	484, 785
BstACI	GRCGYC	2 cut(s)	137, 584
BstC8I	GCNNGC	5 cut(s)	21, 180, 231, 521, 879
BstDEI	CTNAG	6 cut(s)	276, 294, 299, 326, 503, 741
BstF5I	GGATG	2 cut(s)	388, 865
BstFNI	CGCG	4 cut(s)	120, 170, 263, 523
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	172, 586
BstMAI	GTCTC	3 cut(s)	100, 211, 403
BstMCI	CGRYCG	2 cut(s)	168, 246
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 134, 235, 269, 286, 295
BstNI	CCWGG	3 cut(s)	25, 92, 380
BstNSI	RCATGY	2 cut(s)	464, 881
BstSCI	CCNGG	3 cut(s)	23, 90, 378
BstUI	CGCG	4 cut(s)	120, 170, 263, 523
BstV2I	GAAGAC	2 cut(s)	12, 786
BstX2I	RGATCY	2 cut(s)	436, 695
BstYI	RGATCY	2 cut(s)	436, 695
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	47, 149, 167, 182
BtsCI	GGATG	2 cut(s)	388, 865
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	5 cut(s)	21, 180, 231, 521, 879
CfoI	GCGC	2 cut(s)	172, 586
Cfr13I	GGNCC	3 cut(s)	27, 376, 794
CseI	GACGC	2 cut(s)	126, 252
CsiI	ACCWGGT	1 cut(s)	90
CviAII	CATG	4 cut(s)	461, 578, 604, 878
DdeI	CTNAG	6 cut(s)	276, 294, 299, 326, 503, 741
DinI	GGCGCC	1 cut(s)	585
EaeI	YGGCCR	2 cut(s)	45, 165
EagI	CGGCCG	1 cut(s)	165
EciI	GGCGGA	4 cut(s)	64, 244, 259, 407
Ecl136II	GAGCTC	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	2 cut(s)	100, 403
Eco47I	GGWCC	3 cut(s)	27, 376, 794
Eco52I	CGGCCG	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	3 cut(s)	23, 90, 378
EcoT38I	GRGCYC	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	585
EheI	GGCGCC	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	464, 581, 607, 881
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	3 cut(s)	40, 181, 357
FatI	CATG	4 cut(s)	460, 577, 603, 877
FauI	CCCGC	2 cut(s)	125, 528
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 390
FokI	GGATG	2 cut(s)	395, 872
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 390
GlaI	GCGC	2 cut(s)	171, 585
GluI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 390
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	4 cut(s)	47, 149, 167, 182
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	2 cut(s)	126, 252
HhaI	GCGC	2 cut(s)	172, 586
Hin1I	GRCGYC	2 cut(s)	137, 584
Hin1II	CATG	4 cut(s)	464, 581, 607, 881
Hin6I	GCGC	2 cut(s)	170, 584
HinP1I	GCGC	2 cut(s)	170, 584
HincII	GTYRAC	2 cut(s)	250, 738
HindII	GTYRAC	2 cut(s)	250, 738
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	5 cut(s)	76, 307, 782, 818, 827
Hpy166II	GTNNAC	2 cut(s)	250, 738
Hpy188III	TCNNGA	6 cut(s)	160, 241, 301, 547, 776, 797
Hpy8I	GTNNAC	2 cut(s)	250, 738
Hpy99I	CGWCG	3 cut(s)	142, 155, 323
HpyAV	CCTTC	6 cut(s)	40, 139, 370, 427, 610, 686
HpyCH4III	ACNGT	2 cut(s)	484, 785
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 134, 235, 269, 286, 295
HpyF3I	CTNAG	6 cut(s)	276, 294, 299, 326, 503, 741
Hsp92I	GRCGYC	2 cut(s)	137, 584
Hsp92II	CATG	4 cut(s)	464, 581, 607, 881
HspAI	GCGC	2 cut(s)	170, 584
KasI	GGCGCC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	454, 822
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	313, 676
MboII	GAAGA	6 cut(s)	17, 50, 154, 562, 791, 878
MflI	RGATCY	2 cut(s)	436, 695
MhlI	GDGCHC	2 cut(s)	300, 477
MluCI	AATT	4 cut(s)	492, 512, 611, 853
Mly113I	GGCGCC	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	2 cut(s)	378, 652
MseI	TTAA	1 cut(s)	486
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	3 cut(s)	25, 92, 380
MvaI	CCWGG	3 cut(s)	25, 92, 380
MvnI	CGCG	4 cut(s)	120, 170, 263, 523
MwoI	GCNNNNNNNGC	6 cut(s)	41, 134, 235, 269, 286, 295
NarI	GGCGCC	1 cut(s)	584
NdeI	CATATG	1 cut(s)	589
NlaIII	CATG	4 cut(s)	464, 581, 607, 881
NlaIV	GGNNCC	2 cut(s)	585, 795
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	313, 676
NspI	RCATGY	2 cut(s)	464, 881
PaeI	GCATGC	1 cut(s)	881
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PflFI	GACNNNGTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	803
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	6 cut(s)	46, 130, 169, 282, 388, 391
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	339
PluTI	GGCGCC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	339
PpuMI	RGGWCCY	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	3 cut(s)	23, 90, 378
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	3 cut(s)	23, 90, 378
PspN4I	GGNNCC	2 cut(s)	585, 795
PspPI	GGNCC	3 cut(s)	27, 376, 794
PspPPI	RGGWCCY	1 cut(s)	27
PsuI	RGATCY	2 cut(s)	436, 695
PsyI	GACNNNGTC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 390
Sau96I	GGNCC	3 cut(s)	27, 376, 794
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	25, 92, 380
SduI	GDGCHC	2 cut(s)	300, 477
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	373
SfoI	GGCGCC	1 cut(s)	585
SinI	GGWCC	3 cut(s)	27, 376, 794
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SphI	GCATGC	1 cut(s)	881
Sse9I	AATT	4 cut(s)	492, 512, 611, 853
SspDI	GGCGCC	1 cut(s)	583
SspI	AATATT	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	23, 90, 378
TaaI	ACNGT	2 cut(s)	484, 785
TaqI	TCGA	3 cut(s)	140, 242, 422
TasI	AATT	4 cut(s)	492, 512, 611, 853
TauI	GCSGC	6 cut(s)	47, 131, 170, 283, 389, 392
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	313, 676
Tsp45I	GTSAC	2 cut(s)	313, 676
TspDTI	ATGAA	2 cut(s)	525, 545
TspGWI	ACGGA	2 cut(s)	193, 458
TspRI	CASTG	1 cut(s)	790
Tth111I	GACNNNGTC	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	803
VpaK11BI	GGWCC	3 cut(s)	27, 376, 794
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	2 cut(s)	464, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.