Rw7G005050

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003016
Physical Location & Seq
Forward (+)
4222628 .. 4226020
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005050.1

Sequence Viewer

Length: 813 bp
ATGGAGTTTTGGAACAGAGCCCGCGGCGTCGCCGAGGAGGCGGCGAAGCGATCGCAGGATCTCACGATCGGCAGCGCGTGGAAGCTCTCCGACACCGCCAAGCGCTCCAAGGAGATCATCGCCGCCGAGGCCTCCAAGCGAGCCGGTCACATCAAGCAATTTGCCGACGCCTTTGCTCCGTCGCTACCGCAGCCACCTGCGGCGGAGCTTCCACAACAGCAAGAACAAGAGAAGGATCTGGAAGCGTTTGGAATCACCGAGGAGTTGAGAGACTTCGCTAACGGAATGACTTTTGTCACGTTCAAAGATTTTCCTCTTCCAGATGATACGCGATTCTCTGACGTTCCAACAGTCACAAATGTTAGGCAGGATCTTACGGAGTGGCAAGAAAAGCATGCCAATCTTGTTCTTTCGACCGTCGAGGAAATTTCAAAATTAAGATATGGATTGTGTCCACGTGTTATGACCGAAAGGAAATTTTGGAGGATATATTTCATACTAGTTAACAATCATGTCGCACCCTATGAGAAGCGTTATCTGGAGGAAGTTAAACAAAAGTCAACTGAACAATTTTTAGATGACAGAGTAAAGGAACCTACTAAAGTTGAAACAACTTCTAAAGCAGAGGATAAGGAAGAAAAACATCACACTAAAACTTCAACCTCATCAACTACGGATCAAGACTTGGATGCATTTCTCCTGGGGGACAGTGATGATGATCCAGATCATGATGGTGGGGACTTTGATGATGATTTCGACAAATTAGTGGACGGATCGGTAAGCTCTCTTTTTCCTTCTTTTGGGCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

270

Amino Acids

30.76

Weight (kDa)

4.78

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 126 - 172 2.1e-09 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccII CGCG 3 cut(s) 24, 77, 331
AciI CCGC 8 cut(s) 22, 24, 41, 96, 123, 188, 200, 203
AclWI GGATC 6 cut(s) 66, 243, 378, 684, 713, 781
AcsI RAATTY 2 cut(s) 426, 476
AcvI CACGTG 1 cut(s) 458
AcyI GRCGYC 2 cut(s) 27, 168
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 800
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 304, 432, 608, 660
AhlI ACTAGT 1 cut(s) 499
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 3 cut(s) 85, 208, 783
AluI AGCT 3 cut(s) 85, 208, 783
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 6 cut(s) 66, 243, 378, 684, 713, 781
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 72, 190
ApoI RAATTY 2 cut(s) 426, 476
AsiSI GCGATCGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 77, 105
AsuHPI GGTGA 1 cut(s) 247
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 458
BbvI GCAGC 2 cut(s) 84, 202
BccI CCATC 1 cut(s) 725
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 264
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 205
BglI GCCNNNNNGGC 2 cut(s) 38, 128
BisI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
BlsI GCNGC 6 cut(s) 26, 43, 74, 124, 192, 202
Bme1390I CCNGG 1 cut(s) 701
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 701
BmsI GCATC 1 cut(s) 679
BoxI GACNNNNGTC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 560
BsaAI YACGTR 1 cut(s) 458
BsaBI GATNNNNATC 2 cut(s) 717, 723
BsaHI GRCGYC 2 cut(s) 27, 168
BsaJI CCNNGG 6 cut(s) 22, 33, 108, 126, 258, 700
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse118I RCCGGY 1 cut(s) 143
Bse8I GATNNNNATC 2 cut(s) 717, 723
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 6 cut(s) 22, 33, 108, 126, 258, 700
BseGI GGATG 1 cut(s) 694
BseJI GATNNNNATC 2 cut(s) 717, 723
BseLI CCNNNNNNNGG 1 cut(s) 800
BseRI GAGGAG 2 cut(s) 50, 275
BseXI GCAGC 2 cut(s) 84, 202
Bsh1236I CGCG 3 cut(s) 24, 77, 331
Bsh1285I CGRYCG 3 cut(s) 53, 69, 417
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 3 cut(s) 53, 69, 417
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 2 cut(s) 719, 752
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 719, 752
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 22
BspACI CCGC 8 cut(s) 22, 24, 41, 96, 123, 188, 200, 203
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 3 cut(s) 24, 77, 331
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 6 cut(s) 66, 243, 378, 684, 713, 781
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 6 cut(s) 22, 33, 108, 126, 258, 700
BssNI GRCGYC 2 cut(s) 27, 168
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 3 cut(s) 352, 418, 710
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 2 cut(s) 27, 168
BstBAI YACGTR 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 22, 141, 396
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 3 cut(s) 24, 77, 331
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 77, 105
BstMAI GTCTC 1 cut(s) 264
BstMCI CGRYCG 3 cut(s) 53, 69, 417
BstMWI GCNNNNNNNGC 4 cut(s) 38, 128, 190, 391
BstNI CCWGG 1 cut(s) 701
BstNSI RCATGY 1 cut(s) 398
BstPAI GACNNNNGTC 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 699
BstUI CGCG 3 cut(s) 24, 77, 331
BstV1I GCAGC 2 cut(s) 84, 202
BstX2I RGATCY 3 cut(s) 58, 235, 370
BstYI RGATCY 3 cut(s) 58, 235, 370
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 22, 141, 396
CciI TCATGA 1 cut(s) 727
CfoI GCGC 2 cut(s) 77, 105
Cfr10I RCCGGY 1 cut(s) 143
Cfr42I CCGCGG 1 cut(s) 25
CseI GACGC 2 cut(s) 16, 176
CviAII CATG 3 cut(s) 395, 512, 728
CviJI RGCY 8 cut(s) 20, 85, 131, 143, 193, 208, 783, 805
CviKI_1 RGCY 8 cut(s) 20, 85, 131, 143, 193, 208, 783, 805
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 3 cut(s) 398, 515, 731
FaiI YATR 8 cut(s) 396, 444, 464, 490, 497, 513, 525, 729
FaqI GGGAC 2 cut(s) 719, 752
FatI CATG 3 cut(s) 394, 511, 727
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
FspBI CTAG 1 cut(s) 500
GlaI GCGC 2 cut(s) 76, 104
GluI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 144
HgaI GACGC 2 cut(s) 16, 176
HhaI GCGC 2 cut(s) 77, 105
Hin1I GRCGYC 2 cut(s) 27, 168
Hin1II CATG 3 cut(s) 398, 515, 731
Hin6I GCGC 2 cut(s) 75, 103
HinP1I GCGC 2 cut(s) 75, 103
HincII GTYRAC 2 cut(s) 505, 561
HindII GTYRAC 2 cut(s) 505, 561
HinfI GANTC 2 cut(s) 252, 333
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 4 cut(s) 455, 505, 561, 769
Hpy188I TCNGA 3 cut(s) 91, 340, 812
Hpy188III TCNNGA 7 cut(s) 64, 239, 320, 539, 680, 722, 728
Hpy8I GTNNAC 4 cut(s) 455, 505, 561, 769
Hpy99I CGWCG 4 cut(s) 32, 170, 184, 422
HpyAV CCTTC 2 cut(s) 226, 804
HpyCH4III ACNGT 3 cut(s) 352, 418, 710
HpyCH4IV ACGT 3 cut(s) 299, 342, 457
HpyCH4V TGCA 1 cut(s) 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 128, 190, 391
HpySE526I ACGT 3 cut(s) 299, 342, 457
Hsp92I GRCGYC 2 cut(s) 27, 168
Hsp92II CATG 3 cut(s) 398, 515, 731
HspAI GCGC 2 cut(s) 75, 103
KspAI GTTAAC 1 cut(s) 505
KspI CCGCGG 1 cut(s) 25
LmnI GCTCC 3 cut(s) 110, 181, 205
Lsp1109I GCAGC 2 cut(s) 84, 202
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 500
MaeII ACGT 3 cut(s) 299, 342, 457
MaeIII GTNAC 3 cut(s) 146, 295, 352
MboII GAAGA 2 cut(s) 308, 647
MflI RGATCY 3 cut(s) 58, 235, 370
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 158, 426, 434, 476, 569, 761
MmeI TCCRAC 2 cut(s) 114, 371
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 3 cut(s) 437, 504, 549
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 701
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 3 cut(s) 24, 77, 331
MwoI GCNNNNNNNGC 4 cut(s) 38, 128, 190, 391
NlaIII CATG 3 cut(s) 398, 515, 731
NlaIV GGNNCC 1 cut(s) 594
NmeAIII GCCGAG 2 cut(s) 58, 151
NmuCI GTSAC 3 cut(s) 146, 295, 352
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 1 cut(s) 727
PaqCI CACCTGC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 131
PfeI GAWTC 2 cut(s) 252, 333
PkrI GCNGC 6 cut(s) 26, 43, 74, 124, 192, 202
Ple19I CGATCG 2 cut(s) 53, 69
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
Ppu21I YACGTR 1 cut(s) 458
PshAI GACNNNNGTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 699
PspCI CACGTG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 594
PsuI RGATCY 3 cut(s) 58, 235, 370
PvuI CGATCG 2 cut(s) 53, 69
RgaI GCGATCGC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 732
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 3 cut(s) 437, 504, 549
SatI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 1 cut(s) 22
SetI ASST 9 cut(s) 87, 199, 210, 302, 345, 460, 598, 665, 785
SfaAI GCGATCGC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 679
Sfr303I CCGCGG 1 cut(s) 25
SgfI GCGATCGC 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 732
SpeI ACTAGT 1 cut(s) 499
SphI GCATGC 1 cut(s) 398
Sse9I AATT 6 cut(s) 158, 426, 434, 476, 569, 761
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 8 cut(s) 22, 24, 41, 96, 123, 188, 200, 203
SspMI CTAG 1 cut(s) 500
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 352, 418, 710
TaiI ACGT 3 cut(s) 302, 345, 460
TaqI TCGA 3 cut(s) 413, 420, 756
TaqII GACCGA 1 cut(s) 482
TasI AATT 6 cut(s) 158, 426, 434, 476, 569, 761
TauI GCSGC 4 cut(s) 27, 44, 125, 203
TfiI GAWTC 2 cut(s) 252, 333
Tru1I TTAA 3 cut(s) 437, 504, 549
Tru9I TTAA 3 cut(s) 437, 504, 549
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 3 cut(s) 146, 295, 352
TseI GCWGC 2 cut(s) 72, 190
Tsp45I GTSAC 3 cut(s) 146, 295, 352
TspDTI ATGAA 1 cut(s) 484
TspGWI ACGGA 5 cut(s) 168, 297, 392, 689, 786
TspRI CASTG 1 cut(s) 715
XapI RAATTY 2 cut(s) 426, 476
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.