Rh4DG358400

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003016
Physical Location & Seq
Reverse (-)
57906740 .. 57909539
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG358400.1

Sequence Viewer

Length: 861 bp
ATGGAAGACCTGTGGAAGCGAGCCAAGAACTTCGCGGAAGAAGCCGCCAAGAAATCCCAGACCATCACCACCTCCTCCGCCTCCGCCAAAATCTCCGACTTAGTCTCCGAGACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCCTCCAAGAAAGCCGACGAGATCAAATCCGCCGCCCTCAAGCAAGCCGGTCAGATCAAGTCTCTCTCCGTCTCCGAGATCATACCTCCTCAGCTCTCCAACCTCTCCCTCGTCAACTCCTCCTCCTCCTCCGCCTCTGCCTCGGTCAATGAGCCTTCGCCGGAGGAGCTTCAGAAGTTTGGAGTCTCCGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGATACCTTCAAGCACTTTCCGATCCAAGATGAAGCGGAGGAGGTTTCTGAGGTGCCGACTAAGGCGTCGAATGTGAGGAAGGATCTGACTGAGTGGCAGGAGCGCCATGCCACTCTGGTTCTCACTACTGTTAAGGAGATTTCGAGGTTAAGATATGAACTGTGCCCACGTGTTATGAAAGAAGGAAGATTCTGGAGGATATATTTTACCCTTGTGAGCAGTCATGTGGCTCCATATGAGAAGCAATATATGGAGGAGTTGAAGCTCAAGGAAGCAGAGCAATTGGAAGATGATAAAGCGAAGCAAACACCTGTTGTTGGAGAGGCTGATAAAGCAGAAGGAAGTGAAACAAACAAGAAGAGCTTAACTTCCAAATCTTCATCAACTGAGCAGGACTTGGATACATTCCTTTTGGGGGATCTTGAAGACAGCGATGGGGGTCAAGGTCCAGTTCCTTTACCTTTTGACTTGTCAAGTTCTATAGTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

286

Amino Acids

31.6

Weight (kDa)

5.02

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 152 - 199 1.3e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 421
AccII CGCG 2 cut(s) 35, 129
AclWI GGATC 4 cut(s) 117, 385, 459, 795
AcuI CTGAAG 1 cut(s) 299
AcvI CACGTG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 434
AfiI CCNNNNNNNGG 2 cut(s) 686, 784
AflIII ACRYGT 1 cut(s) 538
AgsI TTSAA 3 cut(s) 379, 631, 794
AluBI AGCT 4 cut(s) 238, 313, 634, 732
AluI AGCT 4 cut(s) 238, 313, 634, 732
Alw26I GTCTC 6 cut(s) 104, 109, 210, 220, 334, 339
AlwI GGATC 4 cut(s) 117, 385, 459, 795
AoxI GGCC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 815
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 421
BbrPI CACGTG 1 cut(s) 539
BbsI GAAGAC 2 cut(s) 12, 801
BbvCI CCTCAGC 1 cut(s) 234
BccI CCATC 2 cut(s) 71, 797
BciVI GTATCC 1 cut(s) 763
BcoDI GTCTC 6 cut(s) 104, 109, 210, 220, 334, 339
BfmI CTRYAG 1 cut(s) 849
BfoI RGCGCY 1 cut(s) 475
BfuI GTATCC 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 3 cut(s) 45, 138, 177
BlsI GCNGC 3 cut(s) 46, 139, 178
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 2 cut(s) 423, 600
BpiI GAAGAC 2 cut(s) 12, 801
BpmI CTGGAG 1 cut(s) 583
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 167, 620
BsaAI YACGTR 1 cut(s) 539
BsaHI GRCGYC 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 141, 285
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 784
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 818
BseDI CCNNGG 2 cut(s) 141, 285
BseLI CCNNNNNNNGG 2 cut(s) 686, 784
BseMII CTCAG 5 cut(s) 248, 355, 408, 450, 747
BseNI ACTGG 1 cut(s) 818
BseRI GAGGAG 9 cut(s) 64, 222, 253, 256, 259, 262, 323, 422, 638
BseSI GKGCMC 1 cut(s) 536
Bsh1236I CGCG 2 cut(s) 35, 129
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 421
BsiSI CCGG 2 cut(s) 192, 305
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 686, 784
BsmAI GTCTC 6 cut(s) 104, 109, 210, 220, 334, 339
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 536
Bsp143I GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 5 cut(s) 247, 354, 409, 451, 748
BspFNI CGCG 2 cut(s) 35, 129
BspLI GGNNCC 2 cut(s) 423, 600
BspPI GGATC 4 cut(s) 117, 385, 459, 795
BspQI GCTCTTC 1 cut(s) 722
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 818
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 141, 285
BssMI GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
BssNI GRCGYC 1 cut(s) 434
Bst4CI ACNGT 2 cut(s) 499, 531
Bst6I CTCTTC 1 cut(s) 722
BstACI GRCGYC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 21, 189
BstDEI CTNAG 7 cut(s) 100, 234, 341, 417, 429, 459, 756
BstFNI CGCG 2 cut(s) 35, 129
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 8 cut(s) 125, 168, 201, 225, 340, 393, 454, 790
BstMAI GTCTC 6 cut(s) 104, 109, 210, 220, 334, 339
BstMBI GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
BstMWI GCNNNNNNNGC 4 cut(s) 41, 143, 310, 701
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 2 cut(s) 35, 129
BstV2I GAAGAC 2 cut(s) 12, 801
BstX2I RGATCY 2 cut(s) 451, 787
BstYI RGATCY 2 cut(s) 451, 787
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 816
Cac8I GCNNGC 2 cut(s) 21, 189
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 815
CseI GACGC 1 cut(s) 423
CviAII CATG 2 cut(s) 476, 593
DdeI CTNAG 7 cut(s) 100, 234, 341, 417, 429, 459, 756
DpnI GATC 8 cut(s) 124, 167, 200, 224, 339, 392, 453, 789
DpnII GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 722
EarI CTCTTC 1 cut(s) 722
EciI GGCGGA 4 cut(s) 67, 73, 163, 265
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 815
Eco57I CTGAAG 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 539
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 2 cut(s) 479, 596
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 1 cut(s) 372
FatI CATG 2 cut(s) 475, 592
FauI CCCGC 1 cut(s) 134
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 45, 138, 177
Fsp4HI GCNGC 3 cut(s) 45, 138, 177
GlaI GCGC 1 cut(s) 473
GluI GCNGC 3 cut(s) 45, 138, 177
GsuI CTGGAG 1 cut(s) 583
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 192, 305
HgaI GACGC 1 cut(s) 423
HhaI GCGC 1 cut(s) 474
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 2 cut(s) 479, 596
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 3 cut(s) 327, 360, 558
HpaII CCGG 2 cut(s) 192, 305
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 562, 791
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 3 cut(s) 164, 338, 439
HpyAV CCTTC 5 cut(s) 309, 385, 442, 545, 701
HpyCH4III ACNGT 2 cut(s) 499, 531
HpyCH4IV ACGT 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 143, 310, 701
HpyF3I CTNAG 7 cut(s) 100, 234, 341, 417, 429, 459, 756
HpySE526I ACGT 1 cut(s) 538
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 2 cut(s) 479, 596
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
LguI GCTCTTC 1 cut(s) 722
LmnI GCTCC 3 cut(s) 310, 469, 604
MaeII ACGT 1 cut(s) 538
MalI GATC 8 cut(s) 124, 167, 200, 224, 339, 392, 453, 789
MboI GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
MboII GAAGA 7 cut(s) 17, 50, 567, 668, 738, 739, 806
MfeI CAATTG 1 cut(s) 650
MflI RGATCY 2 cut(s) 451, 787
MhlI GDGCHC 1 cut(s) 536
MluCI AATT 1 cut(s) 650
MlyI GAGTC 2 cut(s) 336, 354
MmeI TCCRAC 4 cut(s) 120, 267, 357, 667
MseI TTAA 3 cut(s) 501, 518, 734
MspI CCGG 2 cut(s) 192, 305
MunI CAATTG 1 cut(s) 650
MvnI CGCG 2 cut(s) 35, 129
MwoI GCNNNNNNNGC 4 cut(s) 41, 143, 310, 701
NdeI CATATG 1 cut(s) 604
NdeII GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
NlaIII CATG 2 cut(s) 479, 596
NlaIV GGNNCC 2 cut(s) 423, 600
NmeAIII GCCGAG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 722
PfeI GAWTC 1 cut(s) 558
PflFI GACNNNGTC 2 cut(s) 101, 350
PkrI GCNGC 3 cut(s) 46, 139, 178
PleI GAGTC 2 cut(s) 335, 354
PmaCI CACGTG 1 cut(s) 539
PmlI CACGTG 1 cut(s) 539
PpsI GAGTC 2 cut(s) 335, 354
Ppu21I YACGTR 1 cut(s) 539
PspCI CACGTG 1 cut(s) 539
PspN4I GGNNCC 2 cut(s) 423, 600
PspPI GGNCC 1 cut(s) 815
PsuI RGATCY 2 cut(s) 451, 787
PsyI GACNNNGTC 2 cut(s) 101, 350
SapI GCTCTTC 1 cut(s) 722
SaqAI TTAA 3 cut(s) 501, 518, 734
SatI GCNGC 3 cut(s) 45, 138, 177
Sau3AI GATC 8 cut(s) 122, 165, 198, 222, 337, 390, 451, 787
Sau96I GGNCC 1 cut(s) 815
SchI GAGTC 2 cut(s) 336, 354
SduI GDGCHC 1 cut(s) 536
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 1 cut(s) 815
SmlI CTYRAG 2 cut(s) 182, 635
SmoI CTYRAG 2 cut(s) 182, 635
Sse9I AATT 1 cut(s) 650
SseBI AGGCCT 1 cut(s) 146
StuI AGGCCT 1 cut(s) 146
TaaI ACNGT 2 cut(s) 499, 531
TaiI ACGT 1 cut(s) 541
TaqI TCGA 2 cut(s) 437, 512
TaqII GACCGA 1 cut(s) 277
TasI AATT 1 cut(s) 650
TauI GCSGC 3 cut(s) 47, 140, 179
TfiI GAWTC 1 cut(s) 558
Tru1I TTAA 3 cut(s) 501, 518, 734
Tru9I TTAA 3 cut(s) 501, 518, 734
TspDTI ATGAA 4 cut(s) 414, 540, 560, 738
TspGWI ACGGA 1 cut(s) 202
Tth111I GACNNNGTC 2 cut(s) 101, 350
VpaK11BI GGWCC 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.