Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8013130.1

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 388

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8013130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 334 bp

atggagttttggaacagagcccgcggcgtcgccgaggaggcggcgaagcgatcgcaggatctcacgatcggcggcgcgtggaagctctccgacatcgtctccgacaccgccaagcgctccaaggagatcatagccgcggaggcctccaagcgagccgatcacatcaagcaatttgccgacgcctttgctccgtcgctactgcagccacctgcggcggagattccacaacaacaagaacaagagaaggatctgatagcgttcggaatcaccgaggagttgagagacttcgctaacggaatgacttttgtcacgttcaaagattttcctcttccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

111

Amino Acids

12.37

Weight (kDa)

4.99

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	3 cut(s)	24, 77, 137
AciI	CCGC	9 cut(s)	22, 24, 41, 72, 108, 135, 137, 212, 215
AclWI	GGATC	2 cut(s)	66, 255
AcyI	GRCGYC	2 cut(s)	27, 180
AfeI	AGCGCT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	316
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	103, 276
AlwI	GGATC	2 cut(s)	66, 255
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	202
AsiSI	GCGATCGC	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	77, 117
AsuHPI	GGTGA	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	2 cut(s)	103, 276
BfmI	CTRYAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	217
BglI	GCCNNNNNGGC	2 cut(s)	38, 140
BisI	GCNGC	6 cut(s)	25, 42, 73, 135, 203, 213
BlsI	GCNGC	6 cut(s)	26, 43, 74, 136, 204, 214
BoxI	GACNNNNGTC	1 cut(s)	305
BsaHI	GRCGYC	2 cut(s)	27, 180
BsaJI	CCNNGG	5 cut(s)	22, 33, 120, 135, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
BseDI	CCNNGG	5 cut(s)	22, 33, 120, 135, 270
BseRI	GAGGAG	2 cut(s)	50, 287
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	3 cut(s)	24, 77, 137
Bsh1285I	CGRYCG	2 cut(s)	53, 69
BshFI	GGCC	1 cut(s)	143
BsiEI	CGRYCG	2 cut(s)	53, 69
BsmAI	GTCTC	2 cut(s)	103, 276
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
BspACI	CCGC	9 cut(s)	22, 24, 41, 72, 108, 135, 137, 212, 215
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	3 cut(s)	24, 77, 137
BspMAI	CTGCAG	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	66, 255
BssECI	CCNNGG	5 cut(s)	22, 33, 120, 135, 270
BssMI	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
BssNI	GRCGYC	2 cut(s)	27, 180
BssT1I	CCWWGG	1 cut(s)	120
BstACI	GRCGYC	2 cut(s)	27, 180
BstC8I	GCNNGC	2 cut(s)	22, 153
BstDSI	CCRYGG	2 cut(s)	22, 135
BstFNI	CGCG	3 cut(s)	24, 77, 137
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	77, 117
BstKTI	GATC	6 cut(s)	53, 61, 69, 129, 160, 250
BstMAI	GTCTC	2 cut(s)	103, 276
BstMBI	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
BstMCI	CGRYCG	2 cut(s)	53, 69
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 140, 202
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	3 cut(s)	24, 77, 137
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	58, 247
BstYI	RGATCY	2 cut(s)	58, 247
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	22, 135
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	22, 153
CfoI	GCGC	2 cut(s)	77, 117
Cfr42I	CCGCGG	2 cut(s)	25, 138
CseI	GACGC	2 cut(s)	16, 188
CviJI	RGCY	6 cut(s)	20, 85, 134, 143, 155, 205
CviKI_1	RGCY	6 cut(s)	20, 85, 134, 143, 155, 205
DpnI	GATC	6 cut(s)	52, 60, 68, 128, 159, 249
DpnII	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	1 cut(s)	131
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	6 cut(s)	25, 42, 73, 135, 203, 213
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	6 cut(s)	25, 42, 73, 135, 203, 213
GlaI	GCGC	2 cut(s)	76, 116
GluI	GCNGC	6 cut(s)	25, 42, 73, 135, 203, 213
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	2 cut(s)	16, 188
HhaI	GCGC	2 cut(s)	77, 117
Hin1I	GRCGYC	2 cut(s)	27, 180
Hin6I	GCGC	2 cut(s)	75, 115
HinP1I	GCGC	2 cut(s)	75, 115
HinfI	GANTC	2 cut(s)	220, 264
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	4 cut(s)	91, 103, 252, 263
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	32, 182, 196
HpyAV	CCTTC	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 140, 202
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	2 cut(s)	27, 180
HspAI	GCGC	2 cut(s)	75, 115
KspI	CCGCGG	2 cut(s)	25, 138
Kzo9I	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
LmnI	GCTCC	2 cut(s)	122, 193
LpnPI	CCDG	2 cut(s)	41, 222
Lsp1109I	GCAGC	1 cut(s)	214
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	6 cut(s)	52, 60, 68, 128, 159, 249
MboI	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	2 cut(s)	58, 247
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	114, 126
MnlI	CCTC	5 cut(s)	28, 31, 133, 154, 265
MspA1I	CMGCKG	2 cut(s)	24, 137
MvnI	CGCG	3 cut(s)	24, 77, 137
MwoI	GCNNNNNNNGC	3 cut(s)	38, 140, 202
NdeII	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	220, 264
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	26, 43, 74, 136, 204, 214
Ple19I	CGATCG	2 cut(s)	53, 69
PshAI	GACNNNNGTC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	2 cut(s)	58, 247
PsyI	GACNNNGTC	1 cut(s)	95
PvuI	CGATCG	2 cut(s)	53, 69
RgaI	GCGATCGC	1 cut(s)	53
SacII	CCGCGG	2 cut(s)	25, 138
SatI	GCNGC	6 cut(s)	25, 42, 73, 135, 203, 213
Sau3AI	GATC	6 cut(s)	50, 58, 66, 126, 157, 247
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	3 cut(s)	87, 211, 314
SfaAI	GCGATCGC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	200
Sfr303I	CCGCGG	2 cut(s)	25, 138
SgfI	GCGATCGC	1 cut(s)	53
SgrBI	CCGCGG	2 cut(s)	25, 138
Sse9I	AATT	1 cut(s)	170
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	9 cut(s)	22, 24, 41, 72, 108, 135, 137, 212, 215
StuI	AGGCCT	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	314
TasI	AATT	1 cut(s)	170
TauI	GCSGC	5 cut(s)	27, 44, 75, 137, 215
TfiI	GAWTC	2 cut(s)	220, 264
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	2 cut(s)	180, 309
Tth111I	GACNNNGTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.