Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002806.1

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Reverse (-)

52546 .. 59363

Gene Structure 6818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002806.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgaggactttgagctgggggccgattacagcagtcagggctttgagcccagaagggtcgttacaagagctcgatgattcaccggtttcagtggagctggcgcccttctgcagcgaagcccagtttgatcggctcgtcactgaggctcaacagctccagcagttgttcgtcatcatttgggcaagcattactcctagaactgtcttcattattttggctggaagcttcaaaagcaacgaaattatctttttcaagcacataaattgcagtaaaggaacaaggacaataaggtcagtcctccctgcaattctatttgtgaaagcaagcaatgcagagttgtgggagaataaagatgatacgcgattctctgacgttccaacagtcacaaatgttaggcaggatcttacggagtggcaagaaaagcatgccaatcttgttctttcgaccgtcgaggaaatttcaaaattaagatatgaattgtgtccacgtgttatgaccgaaaggaaattttggaggatatatttcatactagttaacaatcatgtcgcaccctatgagaagcgttatctggaggaagttaagcaaaagtcaactgaacaatttttagatgacagagtaaaggaacctactaaagttgaaacaacttctaaagcagaggataaggaagaaaaacatcacactaaaacttcaacctcatcaactacggatcaagacttggatgcatttctcctgggggacagtgatgatgatccagatcatgatggtggggactctgatgatgatttcgacaaattagtggacggattggttcaaactaccgtacgagatacactgaaaaagcatgaactgacaagacctcttgctacgaaagagttggagtggtttgcggcctctgctttgttggcacttcccatcttaattctgttcagagttttatcctcaattttctgtacaaagtcaacaaaacctgtacggagtacccaccattcacgtcgcaaggccaaaaggggtcatccagacaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

341

Amino Acids

38.99

Weight (kDa)

5.98

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	100
AccII	CGCG	1 cut(s)	361
AciI	CCGC	1 cut(s)	887
AclWI	GGATC	3 cut(s)	408, 714, 743
AcsI	RAATTY	2 cut(s)	456, 506
AcvI	CACGTG	1 cut(s)	488
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	4 cut(s)	822, 952, 972, 979
AflIII	ACRYGT	1 cut(s)	487
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	6 cut(s)	229, 253, 462, 638, 690, 812
AhlI	ACTAGT	1 cut(s)	529
AjiI	CACGTC	1 cut(s)	992
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	5 cut(s)	15, 70, 97, 154, 225
AluI	AGCT	5 cut(s)	15, 70, 97, 154, 225
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	3 cut(s)	408, 714, 743
AoxI	GGCC	3 cut(s)	20, 888, 999
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	2 cut(s)	456, 506
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	50, 72
BarI	GAAGNNNNNNTAC	2 cut(s)	45, 77
BbrPI	CACGTG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	755, 920
BciT130I	CCWGG	1 cut(s)	731
BcuI	ACTAGT	1 cut(s)	529
BfaI	CTAG	2 cut(s)	195, 530
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	104
BisI	GCNGC	2 cut(s)	112, 888
BlsI	GCNGC	2 cut(s)	113, 889
Bme1390I	CCNGG	1 cut(s)	731
BmgBI	CACGTC	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	3 cut(s)	21, 102, 624
BmrFI	CCNGG	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	709
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	140, 590
BsaAI	YACGTR	1 cut(s)	488
BsaBI	GATNNNNATC	2 cut(s)	747, 753
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	334
Bse8I	GATNNNNATC	2 cut(s)	747, 753
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	2 cut(s)	724, 1012
BseJI	GATNNNNATC	2 cut(s)	747, 753
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	22, 890, 1001
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	83
BsiWI	CGTACG	1 cut(s)	820
BslFI	GGGAC	2 cut(s)	749, 782
BsmFI	GGGAC	2 cut(s)	749, 782
BsnI	GGCC	3 cut(s)	22, 890, 1001
Bsp1286I	GDGCHC	2 cut(s)	50, 72
Bsp1407I	TGTACA	1 cut(s)	950
Bsp143I	GATC	5 cut(s)	127, 400, 706, 748, 754
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	3 cut(s)	22, 890, 1001
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	21, 102, 624
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	3 cut(s)	408, 714, 743
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	5 cut(s)	127, 400, 706, 748, 754
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	5 cut(s)	202, 382, 448, 740, 820
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	950
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	99, 184, 325, 426
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	724, 1012
BstFNI	CGCG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	5 cut(s)	130, 403, 709, 751, 757
BstMBI	GATC	5 cut(s)	127, 400, 706, 748, 754
BstMCI	CGRYCG	1 cut(s)	447
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 231, 329, 421, 893, 902
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	22, 890, 1001
BtrI	CACGTC	1 cut(s)	992
BtsCI	GGATG	2 cut(s)	724, 1012
BtsIMutI	CAGTG	4 cut(s)	96, 138, 745, 830
Cac8I	GCNNGC	4 cut(s)	99, 184, 325, 426
CciI	TCATGA	1 cut(s)	757
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	4 cut(s)	821, 951, 971, 978
CspAI	ACCGGT	1 cut(s)	82
CviAII	CATG	4 cut(s)	425, 542, 758, 842
CviQI	GTAC	4 cut(s)	821, 951, 971, 978
DdeI	CTNAG	1 cut(s)	141
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	5 cut(s)	129, 402, 708, 750, 756
DpnII	GATC	5 cut(s)	127, 400, 706, 748, 754
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	50, 72
Eco53kI	GAGCTC	1 cut(s)	70
Eco72I	CACGTG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	724
EcoT38I	GRGCYC	2 cut(s)	50, 72
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
FaeI	CATG	4 cut(s)	428, 545, 761, 845
FaqI	GGGAC	2 cut(s)	749, 782
FatI	CATG	4 cut(s)	424, 541, 757, 841
Fnu4HI	GCNGC	2 cut(s)	112, 888
FokI	GGATG	2 cut(s)	731, 999
FriOI	GRGCYC	2 cut(s)	50, 72
Fsp4HI	GCNGC	2 cut(s)	112, 888
FspBI	CTAG	2 cut(s)	195, 530
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	112, 888
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	140, 590
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	22, 890, 1001
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	4 cut(s)	428, 545, 761, 845
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	3 cut(s)	535, 591, 960
HindII	GTYRAC	3 cut(s)	535, 591, 960
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	3 cut(s)	77, 363, 770
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	5 cut(s)	485, 535, 591, 799, 960
Hpy188I	TCNGA	3 cut(s)	370, 775, 929
Hpy188III	TCNNGA	5 cut(s)	569, 710, 752, 758, 1016
Hpy8I	GTNNAC	5 cut(s)	485, 535, 591, 799, 960
Hpy99I	CGWCG	2 cut(s)	452, 996
HpyAV	CCTTC	2 cut(s)	47, 115
HpyCH4III	ACNGT	5 cut(s)	202, 382, 448, 740, 820
HpyCH4IV	ACGT	3 cut(s)	372, 487, 991
HpyCH4V	TGCA	5 cut(s)	111, 267, 305, 332, 722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 231, 329, 421, 893, 902
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	3 cut(s)	372, 487, 991
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	4 cut(s)	428, 545, 761, 845
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	127, 400, 706, 748, 754
LmnI	GCTCC	2 cut(s)	94, 159
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	2 cut(s)	195, 530
MaeII	ACGT	3 cut(s)	372, 487, 991
MaeIII	GTNAC	3 cut(s)	60, 136, 382
MalI	GATC	5 cut(s)	129, 402, 708, 750, 756
MboI	GATC	5 cut(s)	127, 400, 706, 748, 754
MboII	GAAGA	2 cut(s)	196, 677
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	50, 72
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	401, 855
Mph1103I	ATGCAT	1 cut(s)	724
MseI	TTAA	4 cut(s)	467, 534, 579, 917
MslI	CAYNNNNRTG	1 cut(s)	762
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	6 cut(s)	38, 231, 329, 421, 893, 902
NarI	GGCGCC	1 cut(s)	101
NdeII	GATC	5 cut(s)	127, 400, 706, 748, 754
NlaIII	CATG	4 cut(s)	428, 545, 761, 845
NlaIV	GGNNCC	3 cut(s)	21, 102, 624
NmuCI	GTSAC	2 cut(s)	136, 382
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PagI	TCATGA	1 cut(s)	757
PfeI	GAWTC	2 cut(s)	77, 363
Pfl23II	CGTACG	1 cut(s)	820
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	113, 889
PleI	GAGTC	1 cut(s)	764
PluTI	GGCGCC	1 cut(s)	104
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	764
Ppu21I	YACGTR	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	729
PspCI	CACGTG	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	729
PspLI	CGTACG	1 cut(s)	820
PspN4I	GGNNCC	3 cut(s)	21, 102, 624
PspPI	GGNCC	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	4 cut(s)	822, 952, 972, 979
RsaNI	GTAC	4 cut(s)	821, 951, 971, 978
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	467, 534, 579, 917
SatI	GCNGC	2 cut(s)	112, 888
Sau3AI	GATC	5 cut(s)	127, 400, 706, 748, 754
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	2 cut(s)	50, 72
SfaNI	GCATC	1 cut(s)	709
SfcI	CTRYAG	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	762
SpeI	ACTAGT	1 cut(s)	529
SphI	GCATGC	1 cut(s)	428
SsiI	CCGC	1 cut(s)	887
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	195, 530
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	729
TaaI	ACNGT	5 cut(s)	202, 382, 448, 740, 820
TaiI	ACGT	3 cut(s)	375, 490, 994
TaqI	TCGA	4 cut(s)	72, 443, 450, 786
TaqII	GACCGA	1 cut(s)	512
TatI	WGTACW	1 cut(s)	950
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	2 cut(s)	77, 363
Tru1I	TTAA	4 cut(s)	467, 534, 579, 917
Tru9I	TTAA	4 cut(s)	467, 534, 579, 917
TscAI	CASTG	4 cut(s)	96, 145, 745, 837
TseFI	GTSAC	2 cut(s)	136, 382
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	2 cut(s)	136, 382
TspDTI	ATGAA	4 cut(s)	196, 489, 514, 858
TspGWI	ACGGA	4 cut(s)	422, 719, 816, 988
TspRI	CASTG	4 cut(s)	96, 145, 745, 837
XapI	RAATTY	2 cut(s)	456, 506
XceI	RCATGY	1 cut(s)	428
XspI	CTAG	2 cut(s)	195, 530
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.