Rh4BG364600

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003016
Physical Location & Seq
Reverse (-)
52226299 .. 52228498
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG364600.1

Sequence Viewer

Length: 891 bp
ATGGAAGACCTGTGGAAGCGAGCCAAGAGCTTCGCGGAAGAAGCCGCCAAGAAATCCCAGACCATCACCACCTCCTCCGCCTCCGCCAAAATCTCCGACTTAGTCTCCGAGACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCCTCCAAGAAAGCCGACGAGATCAAATCCGCCGCCCTCAAGCAAGCCGATCAGATCAAGTCTCTCTCCGTCTCCGAGATCATACCTCCTCAGCTCTCCAACCTCTCCCTCGTCAACTCCTCCTCCGCCTCTGCCTCGGTCAATGAGCCTTCGCCGGAGGAGCTTCAGAAGTTTGGAGTCTCCGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGATACCTTCAAGCACTTTCCGATCCAAGATGAAGCGGAGGAGGTTTCTGAGGTGCCGACTACGGCGTCGAATGTGAGGAAGGATCTGACTGAGTGGCAGGAGCGCCATGCCACTCTGGTTCTCACTACTGTTAAGGAGATTTCGAGGTTAAGATATGAACTGTGCCCACGTGTTATGAAAGAACGAAGATTCTGGAGGATATATTTTACCCTTGTGAGCAGCCATGTGGCTCCATATGAGAAGCAATATATGGAGGAGTTGAAGCTCAAGGAAGCAGAGCAATTGGAAGATGATAAAGCGAAGCAAACACCTGTTGTTGGAGAGGCTGATAAAGCAGAAGGAAGTGAAACAAACAAGAAGAGCTTAACTTCCAAATCTTCATCAACTGAGCAGGACTTGGATACATTCCTTTTGGGGGATCTTGAAGACAGTGATGGGGGTCAAGATGATGGCAACGACAATTTTGATGATGATTTCGACAAGATTGGCGATTCGGATGTTGATGATGAAAAGCATGTGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

296

Amino Acids

33.1

Weight (kDa)

4.76

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 150 - 197 1.8e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 415
AccII CGCG 2 cut(s) 35, 129
AclWI GGATC 4 cut(s) 117, 379, 453, 789
AcuI CTGAAG 1 cut(s) 293
AcvI CACGTG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 680, 778
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 373, 625, 788
AluBI AGCT 5 cut(s) 30, 238, 307, 628, 726
AluI AGCT 5 cut(s) 30, 238, 307, 628, 726
Alw26I GTCTC 6 cut(s) 104, 109, 210, 220, 328, 333
AlwI GGATC 4 cut(s) 117, 379, 453, 789
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 530
BanI GGYRCC 1 cut(s) 415
BbrPI CACGTG 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 12, 795
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 594
BccI CCATC 3 cut(s) 71, 791, 806
BceAI ACGGC 1 cut(s) 441
BciVI GTATCC 1 cut(s) 757
BcoDI GTCTC 6 cut(s) 104, 109, 210, 220, 328, 333
BfoI RGCGCY 1 cut(s) 469
BfuI GTATCC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 45, 138, 177, 583
BlsI GCNGC 4 cut(s) 46, 139, 178, 584
BmiI GGNNCC 2 cut(s) 417, 594
BpiI GAAGAC 2 cut(s) 12, 795
BpmI CTGGAG 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 167, 614
BsaAI YACGTR 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 141, 279
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 778
BseDI CCNNGG 2 cut(s) 141, 279
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 2 cut(s) 680, 778
BseMII CTCAG 5 cut(s) 248, 349, 402, 444, 741
BseRI GAGGAG 7 cut(s) 64, 222, 253, 256, 317, 416, 632
BseSI GKGCMC 1 cut(s) 530
BseXI GCAGC 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 35, 129
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 680, 778
BsmAI GTCTC 6 cut(s) 104, 109, 210, 220, 328, 333
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 5 cut(s) 247, 348, 403, 445, 742
BspFNI CGCG 2 cut(s) 35, 129
BspLI GGNNCC 2 cut(s) 417, 594
BspPI GGATC 4 cut(s) 117, 379, 453, 789
BspQI GCTCTTC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 141, 279
BssMI GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
BssNI GRCGYC 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 493, 525, 794
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 21, 189
BstDEI CTNAG 6 cut(s) 100, 234, 335, 411, 453, 750
BstF5I GGATG 1 cut(s) 865
BstFNI CGCG 2 cut(s) 35, 129
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 9 cut(s) 125, 168, 196, 201, 225, 334, 387, 448, 784
BstMAI GTCTC 6 cut(s) 104, 109, 210, 220, 328, 333
BstMBI GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
BstMWI GCNNNNNNNGC 4 cut(s) 41, 143, 304, 695
BstNSI RCATGY 1 cut(s) 881
BstSLI GKGCMC 1 cut(s) 530
BstUI CGCG 2 cut(s) 35, 129
BstV1I GCAGC 1 cut(s) 594
BstV2I GAAGAC 2 cut(s) 12, 795
BstX2I RGATCY 2 cut(s) 445, 781
BstYI RGATCY 2 cut(s) 445, 781
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 865
BtsIMutI CAGTG 1 cut(s) 799
Cac8I GCNNGC 2 cut(s) 21, 189
CfoI GCGC 1 cut(s) 468
CseI GACGC 1 cut(s) 417
CviAII CATG 3 cut(s) 470, 587, 878
DdeI CTNAG 6 cut(s) 100, 234, 335, 411, 453, 750
DpnI GATC 9 cut(s) 124, 167, 195, 200, 224, 333, 386, 447, 783
DpnII GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
DrdI GACNNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
EciI GGCGGA 4 cut(s) 67, 73, 163, 259
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 293
Eco72I CACGTG 1 cut(s) 533
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 3 cut(s) 473, 590, 881
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 1 cut(s) 366
FatI CATG 3 cut(s) 469, 586, 877
FauI CCCGC 1 cut(s) 134
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 4 cut(s) 45, 138, 177, 583
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 4 cut(s) 45, 138, 177, 583
GlaI GCGC 1 cut(s) 467
GluI GCNGC 4 cut(s) 45, 138, 177, 583
GsuI CTGGAG 1 cut(s) 577
HaeII RGCGCY 1 cut(s) 469
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 417
HhaI GCGC 1 cut(s) 468
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 3 cut(s) 473, 590, 881
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 321, 354, 552, 854
HpaII CCGG 1 cut(s) 299
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 556, 785, 806
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 3 cut(s) 164, 332, 433
HpyAV CCTTC 4 cut(s) 303, 379, 436, 695
HpyCH4III ACNGT 3 cut(s) 493, 525, 794
HpyCH4IV ACGT 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 143, 304, 695
HpyF3I CTNAG 6 cut(s) 100, 234, 335, 411, 453, 750
HpySE526I ACGT 1 cut(s) 532
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 3 cut(s) 473, 590, 881
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 3 cut(s) 304, 463, 598
LpnPI CCDG 8 cut(s) 23, 71, 312, 446, 464, 541, 687, 740
Lsp1109I GCAGC 1 cut(s) 594
MaeII ACGT 1 cut(s) 532
MalI GATC 9 cut(s) 124, 167, 195, 200, 224, 333, 386, 447, 783
MboI GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
MboII GAAGA 7 cut(s) 17, 50, 561, 662, 732, 733, 800
MfeI CAATTG 1 cut(s) 644
MflI RGATCY 2 cut(s) 445, 781
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 2 cut(s) 644, 823
MlyI GAGTC 2 cut(s) 330, 348
MmeI TCCRAC 4 cut(s) 120, 267, 351, 661
MseI TTAA 3 cut(s) 495, 512, 728
MspI CCGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 644
MvnI CGCG 2 cut(s) 35, 129
MwoI GCNNNNNNNGC 4 cut(s) 41, 143, 304, 695
NdeI CATATG 1 cut(s) 598
NdeII GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
NlaIII CATG 3 cut(s) 473, 590, 881
NlaIV GGNNCC 2 cut(s) 417, 594
NmeAIII GCCGAG 1 cut(s) 166
NspI RCATGY 1 cut(s) 881
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 716
PfeI GAWTC 2 cut(s) 552, 854
PflFI GACNNNGTC 2 cut(s) 101, 344
PkrI GCNGC 4 cut(s) 46, 139, 178, 584
PleI GAGTC 2 cut(s) 329, 348
PmaCI CACGTG 1 cut(s) 533
PmlI CACGTG 1 cut(s) 533
PpsI GAGTC 2 cut(s) 329, 348
Ppu21I YACGTR 1 cut(s) 533
PspCI CACGTG 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 417, 594
PsuI RGATCY 2 cut(s) 445, 781
PsyI GACNNNGTC 2 cut(s) 101, 344
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 3 cut(s) 495, 512, 728
SatI GCNGC 4 cut(s) 45, 138, 177, 583
Sau3AI GATC 9 cut(s) 122, 165, 193, 198, 222, 331, 384, 445, 781
SchI GAGTC 2 cut(s) 330, 348
SduI GDGCHC 1 cut(s) 530
SmlI CTYRAG 2 cut(s) 182, 629
SmoI CTYRAG 2 cut(s) 182, 629
Sse9I AATT 2 cut(s) 644, 823
SseBI AGGCCT 1 cut(s) 146
StuI AGGCCT 1 cut(s) 146
TaaI ACNGT 3 cut(s) 493, 525, 794
TaiI ACGT 1 cut(s) 535
TaqI TCGA 3 cut(s) 431, 506, 840
TaqII GACCGA 1 cut(s) 271
TasI AATT 2 cut(s) 644, 823
TauI GCSGC 3 cut(s) 47, 140, 179
TfiI GAWTC 2 cut(s) 552, 854
Tru1I TTAA 3 cut(s) 495, 512, 728
Tru9I TTAA 3 cut(s) 495, 512, 728
TscAI CASTG 1 cut(s) 799
TseI GCWGC 1 cut(s) 582
TspDTI ATGAA 5 cut(s) 408, 534, 554, 732, 885
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 799
Tth111I GACNNNGTC 2 cut(s) 101, 344
XceI RCATGY 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.