FvH4_4g29270

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003016
Physical Location & Seq
Reverse (-)
29466622 .. 29469415
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29270.t1

Sequence Viewer

Length: 885 bp
ATGGAAGACCTCTGGAAGCGAGCCAAGAGCTTCGCGGAAGAAGCCGCCAAGAAATCCCAAACCATCACCACCTCCTCCGCCTCCGCCAAAATCTCCGACTTAGTCTCCGAGACCGCCAAACGCTCCCGCGAGTTCGCCGCCGAGGCCTCCAAGAAAGCCGACGAGATCAAAACCGCCGCCCTCAAGCAGGCCGATCAGATCAAGTCCCTCTCCGTCTCCGAGATCATTCCTCCTAACCTCTCCAACATCGTCAACTCCTCCGCTTCCTCCGCCTCCGCCGCTGAGCCGTCGCCGGAGGAGCTTCAGAAGTTCGGCGTCTCCGACGATCTGAGGGACTTCGTCAAGGGGCTGACGTCTGATACCTTCAAGCATTTTCCGATCCAAGATGAAGCGGAGGAGGTTAATGAGGTGCCGACGACGACGTCGAATGTGAGGAAGGATCTGACTGAGTGGCAGGAGCGCCATGCTACTCTGGTTCTCACCACTGTTAAGGAGATTTCAAGGTTAAGATATGAACTGTGCCCGCGTGTTATGAAAGAAAGAAGATTCTGGAAGATATATTTTACCCTTGTGAGCAGCCATGTGGCTCCGTATGAGAAGCGATACATGGAAGAGTTGAAGCTCAAGGAAGAAGAGAAATTGAAGGATGATAAAGTGAAGCAAACACCTGTGGTTGGAGAGGCTGACAAAGCAGAAGGAAGTGAAACAAACAACAAGAGTTTGACTTCCAAATCTTCATCAACTGAGCAGGACTTGGATTCATTCCTTTTGGGGGATCTTGAAGACAGCGATGGGGGTCAAGATGATGGTAATGACAATTTTGATGATGATTTTGACAAGATTGGCGATTCGGATGTTGATGATGAAAAGCAAGTGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

295

Amino Acids

32.93

Weight (kDa)

4.8

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 148 - 195 1.9e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AatII GACGTC 2 cut(s) 356, 425
AccB1I GGYRCC 1 cut(s) 409
AccII CGCG 3 cut(s) 35, 129, 526
AclWI GGATC 3 cut(s) 373, 447, 783
AcuI CTGAAG 1 cut(s) 287
AcyI GRCGYC 3 cut(s) 315, 353, 422
AfiI CCNNNNNNNGG 3 cut(s) 187, 674, 772
AgsI TTSAA 5 cut(s) 367, 501, 619, 643, 782
AluBI AGCT 3 cut(s) 30, 301, 622
AluI AGCT 3 cut(s) 30, 301, 622
Alw26I GTCTC 4 cut(s) 104, 109, 220, 322
AlwI GGATC 3 cut(s) 373, 447, 783
AoxI GGCC 2 cut(s) 144, 189
ApeKI GCWGC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 58, 472
BaeGI GKGCMC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 409
BbsI GAAGAC 2 cut(s) 12, 789
BbvI GCAGC 1 cut(s) 588
BccI CCATC 3 cut(s) 71, 785, 800
BceAI ACGGC 1 cut(s) 271
BcoDI GTCTC 4 cut(s) 104, 109, 220, 322
BfoI RGCGCY 1 cut(s) 463
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 5 cut(s) 45, 138, 177, 279, 577
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 5 cut(s) 46, 139, 178, 280, 578
BmiI GGNNCC 2 cut(s) 411, 588
BpiI GAAGAC 2 cut(s) 12, 789
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 167, 608
BsaHI GRCGYC 3 cut(s) 315, 353, 422
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 674, 772
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 652, 859
BseLI CCNNNNNNNGG 3 cut(s) 187, 674, 772
BseMII CTCAG 4 cut(s) 273, 320, 438, 735
BseRI GAGGAG 4 cut(s) 64, 247, 311, 410
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 1 cut(s) 588
Bsh1236I CGCG 3 cut(s) 35, 129, 526
BshFI GGCC 2 cut(s) 146, 191
BshNI GGYRCC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 2 cut(s) 190, 347
BslI CCNNNNNNNGG 3 cut(s) 187, 674, 772
BsmAI GTCTC 4 cut(s) 104, 109, 220, 322
BsmBI CGTCTC 2 cut(s) 220, 322
BsmFI GGGAC 2 cut(s) 190, 347
BsnI GGCC 2 cut(s) 146, 191
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
Bsp1720I GCTNAGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 146, 191
BspCNI CTCAG 4 cut(s) 274, 321, 439, 736
BspFNI CGCG 3 cut(s) 35, 129, 526
BspLI GGNNCC 2 cut(s) 411, 588
BspPI GGATC 3 cut(s) 373, 447, 783
BspT107I GGYRCC 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
BssNI GRCGYC 3 cut(s) 315, 353, 422
Bst4CI ACNGT 2 cut(s) 487, 519
Bst6I CTCTTC 2 cut(s) 606, 627
BstACI GRCGYC 3 cut(s) 315, 353, 422
BstC8I GCNNGC 3 cut(s) 21, 189, 524
BstDEI CTNAG 5 cut(s) 100, 282, 329, 447, 744
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 652, 859
BstFNI CGCG 3 cut(s) 35, 129, 526
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 8 cut(s) 168, 196, 201, 225, 328, 381, 442, 778
BstMAI GTCTC 4 cut(s) 104, 109, 220, 322
BstMBI GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
BstMWI GCNNNNNNNGC 6 cut(s) 41, 143, 269, 278, 298, 689
BstSLI GKGCMC 1 cut(s) 524
BstUI CGCG 3 cut(s) 35, 129, 526
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 2 cut(s) 12, 789
BstX2I RGATCY 2 cut(s) 439, 775
BstYI RGATCY 2 cut(s) 439, 775
BsuRI GGCC 2 cut(s) 146, 191
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 2 cut(s) 652, 859
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 3 cut(s) 21, 189, 524
CfoI GCGC 1 cut(s) 462
CseI GACGC 1 cut(s) 304
CviAII CATG 3 cut(s) 464, 581, 607
DdeI CTNAG 5 cut(s) 100, 282, 329, 447, 744
DpnI GATC 8 cut(s) 167, 195, 200, 224, 327, 380, 441, 777
DpnII GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 606, 627
EarI CTCTTC 2 cut(s) 606, 627
EciI GGCGGA 4 cut(s) 67, 73, 259, 265
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 185
Esp3I CGTCTC 2 cut(s) 220, 322
FaeI CATG 3 cut(s) 467, 584, 610
FaiI YATR 7 cut(s) 465, 513, 533, 559, 582, 594, 608
FaqI GGGAC 2 cut(s) 190, 347
FatI CATG 3 cut(s) 463, 580, 606
FauI CCCGC 2 cut(s) 134, 531
Fnu4HI GCNGC 5 cut(s) 45, 138, 177, 279, 577
FokI GGATG 2 cut(s) 659, 866
Fsp4HI GCNGC 5 cut(s) 45, 138, 177, 279, 577
GlaI GCGC 1 cut(s) 461
GluI GCNGC 5 cut(s) 45, 138, 177, 279, 577
HaeII RGCGCY 1 cut(s) 463
HaeIII GGCC 2 cut(s) 146, 191
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 462
Hin1I GRCGYC 3 cut(s) 315, 353, 422
Hin1II CATG 3 cut(s) 467, 584, 610
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 546, 758, 848
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 58, 472
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 4 cut(s) 13, 550, 779, 800
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 7 cut(s) 164, 292, 326, 418, 421, 424, 427
HpyAV CCTTC 4 cut(s) 373, 430, 637, 689
HpyCH4III ACNGT 2 cut(s) 487, 519
HpyCH4IV ACGT 2 cut(s) 353, 422
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 143, 269, 278, 298, 689
HpyF3I CTNAG 5 cut(s) 100, 282, 329, 447, 744
HpySE526I ACGT 2 cut(s) 353, 422
Hsp92I GRCGYC 3 cut(s) 315, 353, 422
Hsp92II CATG 3 cut(s) 467, 584, 610
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
LmnI GCTCC 4 cut(s) 128, 298, 457, 592
LpnPI CCDG 7 cut(s) 173, 306, 440, 458, 535, 681, 734
Lsp1109I GCAGC 1 cut(s) 588
MaeII ACGT 2 cut(s) 353, 422
MalI GATC 8 cut(s) 167, 195, 200, 224, 327, 380, 441, 777
MboI GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
MboII GAAGA 9 cut(s) 17, 50, 555, 565, 623, 641, 644, 726, 794
MflI RGATCY 2 cut(s) 439, 775
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 638, 817
MmeI TCCRAC 4 cut(s) 120, 267, 345, 655
MseI TTAA 3 cut(s) 402, 489, 506
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 293
MvnI CGCG 3 cut(s) 35, 129, 526
MwoI GCNNNNNNNGC 6 cut(s) 41, 143, 269, 278, 298, 689
NdeII GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
NlaIII CATG 3 cut(s) 467, 584, 610
NlaIV GGNNCC 2 cut(s) 411, 588
NmeAIII GCCGAG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 146
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 422
PfeI GAWTC 3 cut(s) 546, 758, 848
PflFI GACNNNGTC 3 cut(s) 101, 338, 421
PkrI GCNGC 5 cut(s) 46, 139, 178, 280, 578
PspN4I GGNNCC 2 cut(s) 411, 588
PsuI RGATCY 2 cut(s) 439, 775
PsyI GACNNNGTC 3 cut(s) 101, 338, 421
SaqAI TTAA 3 cut(s) 402, 489, 506
SatI GCNGC 5 cut(s) 45, 138, 177, 279, 577
Sau3AI GATC 8 cut(s) 165, 193, 198, 222, 325, 378, 439, 775
SduI GDGCHC 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 182, 623
SmoI CTYRAG 2 cut(s) 182, 623
Sse9I AATT 2 cut(s) 638, 817
SseBI AGGCCT 1 cut(s) 146
StuI AGGCCT 1 cut(s) 146
TaaI ACNGT 2 cut(s) 487, 519
TaiI ACGT 2 cut(s) 356, 425
TaqI TCGA 1 cut(s) 425
TasI AATT 2 cut(s) 638, 817
TauI GCSGC 4 cut(s) 47, 140, 179, 281
TfiI GAWTC 3 cut(s) 546, 758, 848
Tru1I TTAA 3 cut(s) 402, 489, 506
Tru9I TTAA 3 cut(s) 402, 489, 506
TscAI CASTG 1 cut(s) 490
TseI GCWGC 1 cut(s) 576
TspDTI ATGAA 6 cut(s) 402, 528, 548, 726, 750, 879
TspGWI ACGGA 2 cut(s) 202, 579
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 3 cut(s) 101, 338, 421
XagI CCTNNNNNAGG 1 cut(s) 185
ZraI GACGTC 2 cut(s) 354, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.