RchiOBHm_Chr4g0437321

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003016
Physical Location & Seq
Reverse (-)
60450614 .. 60453540
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40558

Sequence Viewer

Length: 894 bp
ATGGAAGACCTGTGGAAGCGAGCCAAGAACTTCGCGGAAGAAGCCGCCAAGAAATCCCAGACCATCACCACCTCCTCCGCCTCCGCCAAAATCTCCGACTTAGTCTCCGAGACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCCTCCAAGAAAGCCGACGAGATCAAATCCGCCGCCCTCAAGCAAGCCGATCAGATCAAGTCTCTCTCCGTCTCCGAGATCATACCTCCTCAGCTCTCCAACCTCTCCCTCGTCAACTCCTCCTCCTCCGCCTCTGCCTCGGTCAATGAGCCTTCGCCGGAGGAGCTTCAGAAGTTTGGAGTCTCCGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGATACCTTCAAGCACTTTCCGATCCAAGATGAAGCGGAGGAGGTTTCTGAGGTGCCGACTACGGCGTCGAATGTGAGGAAGGATCTGACTGAGTGGCAGGAGCGCCATGCCACTCTGGTTCTCACTACTGTTAAGGAGATTTCGAGGTTAAGATATGAACTGTGCCCACGTGTTATGAAAGAAGGAAGATTCTGGAGGATATATTTTACCCTTGTGAGCAGTCATGTGGCTCCATATGAGAAGCAATATATGGAGGAGTTGAAGCTCAAGGAAGCAGAGCAATTGGAAGATGATAAAGCGAAGCAAACACCTGTTGTTGGAGAGGCTGATAAAGCAGAAGGAAGTGAAACAAACAAGAAGAGCTTAACTTCCAAATCTTCATCAACTGAGCAGGACTTGGATACATTCCTTTTGGGGGATCTTGAAGACAGCGATGGGGGTCAAGATGATGGCAACGACAATTTTGATGATGATTTCGACAAGATTGGCGATTCGGATGTTGATGATGAAAAGCATGTGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

297

Amino Acids

33.11

Weight (kDa)

4.73

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 151 - 198 1.4e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
AccB1I GGYRCC 1 cut(s) 418
AccII CGCG 2 cut(s) 35, 129
AclWI GGATC 4 cut(s) 117, 382, 456, 792
AcuI CTGAAG 1 cut(s) 296
AcvI CACGTG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 683, 781
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 3 cut(s) 376, 628, 791
AluBI AGCT 4 cut(s) 238, 310, 631, 729
AluI AGCT 4 cut(s) 238, 310, 631, 729
Alw26I GTCTC 6 cut(s) 104, 109, 210, 220, 331, 336
AlwI GGATC 4 cut(s) 117, 382, 456, 792
AoxI GGCC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 1 cut(s) 418
BbrPI CACGTG 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 12, 798
BbvCI CCTCAGC 1 cut(s) 234
BccI CCATC 3 cut(s) 71, 794, 809
BceAI ACGGC 1 cut(s) 444
BciVI GTATCC 1 cut(s) 760
BcoDI GTCTC 6 cut(s) 104, 109, 210, 220, 331, 336
BfoI RGCGCY 1 cut(s) 472
BfuI GTATCC 1 cut(s) 760
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 3 cut(s) 45, 138, 177
BlsI GCNGC 3 cut(s) 46, 139, 178
BmiI GGNNCC 2 cut(s) 420, 597
BpiI GAAGAC 2 cut(s) 12, 798
BpmI CTGGAG 1 cut(s) 580
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 167, 617
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 141, 282
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 683, 781
BseDI CCNNGG 2 cut(s) 141, 282
BseGI GGATG 1 cut(s) 868
BseLI CCNNNNNNNGG 2 cut(s) 683, 781
BseMII CTCAG 5 cut(s) 248, 352, 405, 447, 744
BseRI GAGGAG 8 cut(s) 64, 222, 253, 256, 259, 320, 419, 635
BseSI GKGCMC 1 cut(s) 533
Bsh1236I CGCG 2 cut(s) 35, 129
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 683, 781
BsmAI GTCTC 6 cut(s) 104, 109, 210, 220, 331, 336
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 5 cut(s) 247, 351, 406, 448, 745
BspFNI CGCG 2 cut(s) 35, 129
BspLI GGNNCC 2 cut(s) 420, 597
BspPI GGATC 4 cut(s) 117, 382, 456, 792
BspQI GCTCTTC 1 cut(s) 719
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 141, 282
BssMI GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
BssNI GRCGYC 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 496, 528
Bst6I CTCTTC 1 cut(s) 719
BstACI GRCGYC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 21, 189
BstDEI CTNAG 6 cut(s) 100, 234, 338, 414, 456, 753
BstF5I GGATG 1 cut(s) 868
BstFNI CGCG 2 cut(s) 35, 129
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 9 cut(s) 125, 168, 196, 201, 225, 337, 390, 451, 787
BstMAI GTCTC 6 cut(s) 104, 109, 210, 220, 331, 336
BstMBI GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
BstMWI GCNNNNNNNGC 4 cut(s) 41, 143, 307, 698
BstNSI RCATGY 1 cut(s) 884
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 2 cut(s) 35, 129
BstV2I GAAGAC 2 cut(s) 12, 798
BstX2I RGATCY 2 cut(s) 448, 784
BstYI RGATCY 2 cut(s) 448, 784
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 813
BtsCI GGATG 1 cut(s) 868
Cac8I GCNNGC 2 cut(s) 21, 189
CfoI GCGC 1 cut(s) 471
CseI GACGC 1 cut(s) 420
CviAII CATG 3 cut(s) 473, 590, 881
DdeI CTNAG 6 cut(s) 100, 234, 338, 414, 456, 753
DpnI GATC 9 cut(s) 124, 167, 195, 200, 224, 336, 389, 450, 786
DpnII GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
EciI GGCGGA 4 cut(s) 67, 73, 163, 262
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 296
Eco72I CACGTG 1 cut(s) 536
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 3 cut(s) 476, 593, 884
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 369
FatI CATG 3 cut(s) 472, 589, 880
FauI CCCGC 1 cut(s) 134
FauNDI CATATG 1 cut(s) 601
Fnu4HI GCNGC 3 cut(s) 45, 138, 177
FokI GGATG 1 cut(s) 875
Fsp4HI GCNGC 3 cut(s) 45, 138, 177
GlaI GCGC 1 cut(s) 470
GluI GCNGC 3 cut(s) 45, 138, 177
GsuI CTGGAG 1 cut(s) 580
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 420
HhaI GCGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 3 cut(s) 476, 593, 884
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 324, 357, 555, 857
HpaII CCGG 1 cut(s) 302
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 559, 788, 809
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 3 cut(s) 164, 335, 436
HpyAV CCTTC 5 cut(s) 306, 382, 439, 542, 698
HpyCH4III ACNGT 2 cut(s) 496, 528
HpyCH4IV ACGT 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 143, 307, 698
HpyF3I CTNAG 6 cut(s) 100, 234, 338, 414, 456, 753
HpySE526I ACGT 1 cut(s) 535
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 3 cut(s) 476, 593, 884
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
LguI GCTCTTC 1 cut(s) 719
LmnI GCTCC 3 cut(s) 307, 466, 601
LpnPI CCDG 8 cut(s) 23, 71, 315, 449, 467, 544, 690, 743
MaeII ACGT 1 cut(s) 535
MalI GATC 9 cut(s) 124, 167, 195, 200, 224, 336, 389, 450, 786
MboI GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
MboII GAAGA 7 cut(s) 17, 50, 564, 665, 735, 736, 803
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 2 cut(s) 448, 784
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 2 cut(s) 647, 826
MlyI GAGTC 2 cut(s) 333, 351
MmeI TCCRAC 4 cut(s) 120, 267, 354, 664
MseI TTAA 3 cut(s) 498, 515, 731
MspI CCGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 647
MvnI CGCG 2 cut(s) 35, 129
MwoI GCNNNNNNNGC 4 cut(s) 41, 143, 307, 698
NdeI CATATG 1 cut(s) 601
NdeII GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
NlaIII CATG 3 cut(s) 476, 593, 884
NlaIV GGNNCC 2 cut(s) 420, 597
NmeAIII GCCGAG 1 cut(s) 166
NspI RCATGY 1 cut(s) 884
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 719
PfeI GAWTC 2 cut(s) 555, 857
PflFI GACNNNGTC 2 cut(s) 101, 347
PkrI GCNGC 3 cut(s) 46, 139, 178
PleI GAGTC 2 cut(s) 332, 351
PmaCI CACGTG 1 cut(s) 536
PmlI CACGTG 1 cut(s) 536
PpsI GAGTC 2 cut(s) 332, 351
Ppu21I YACGTR 1 cut(s) 536
PspCI CACGTG 1 cut(s) 536
PspN4I GGNNCC 2 cut(s) 420, 597
PsuI RGATCY 2 cut(s) 448, 784
PsyI GACNNNGTC 2 cut(s) 101, 347
SapI GCTCTTC 1 cut(s) 719
SaqAI TTAA 3 cut(s) 498, 515, 731
SatI GCNGC 3 cut(s) 45, 138, 177
Sau3AI GATC 9 cut(s) 122, 165, 193, 198, 222, 334, 387, 448, 784
SchI GAGTC 2 cut(s) 333, 351
SduI GDGCHC 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 182, 632
SmoI CTYRAG 2 cut(s) 182, 632
Sse9I AATT 2 cut(s) 647, 826
SseBI AGGCCT 1 cut(s) 146
StuI AGGCCT 1 cut(s) 146
TaaI ACNGT 2 cut(s) 496, 528
TaiI ACGT 1 cut(s) 538
TaqI TCGA 3 cut(s) 434, 509, 843
TaqII GACCGA 1 cut(s) 274
TasI AATT 2 cut(s) 647, 826
TauI GCSGC 3 cut(s) 47, 140, 179
TfiI GAWTC 2 cut(s) 555, 857
Tru1I TTAA 3 cut(s) 498, 515, 731
Tru9I TTAA 3 cut(s) 498, 515, 731
TspDTI ATGAA 5 cut(s) 411, 537, 557, 735, 888
TspGWI ACGGA 1 cut(s) 202
Tth111I GACNNNGTC 2 cut(s) 101, 347
XceI RCATGY 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.