Rmu_sc0003610.1_g000035

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
OG0003016
Physical Location & Seq
Forward (+)
140587 .. 144944
4358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003610.1_g000035.1.cds

Sequence Viewer

Length: 1170 bp
atggagttttggaacagagcccgcggcgtcgccgaggaggcggcgaagcgatcgcaggatctcacgatcggcggcgcgtggaagctctccgacatcgtctccgacaccgccaagcgctccaaggagatcatagccgcggaggcctccaagcgagccgatcacatcaagcaatttgccgacgcctttgctccgtcgctactgcagccacctgcggcggagattccacaacaacaagaacaagagaaggatctggaagcgttcggaatcaccgaggagttgagagacttcgctaacggaatgacttttgtcacgttcaaagattttcctcttccagatgatacgcgattctctgacgttccaacagtcacaaatgttaggcaggatcttacggagtggcaagaaaagcatgctaatcttgttctttcgaccgtcgaggaaatttcaaaattaagatatgaattgtgtccacgtgttatgaccgaaaggaaattttggaggatatatttcatactagttaacaatcatgtcgcaccctatgagaagcgttatctggaggaagttaagcaaaagtcaactgaacaatttttagatgacagagtaaaggaacctactaaagttgaaacaacttctaaagcagaggataaggaagaaaaacatcacactaaaacttcaacctcatcaactacggatcaagacttggatgcatttctcctgggggacagtgatgatgatccagatcatgatggtggggactctgatgatgatttcgacaaattagtggacggatcgatgatacacgattctctgacgttgcaacagtcacaaatgttaggcaggatcttacggagtggcaagaaaagcatgccaatcttgttctttcgaccgtcgagctatgagaagcgttatctggaggaagttaagcaaaagtcaactgaacaattgttagatgacagaataaaggaacctactaaagttgaaacaacttctaaagcagaggataaggaagaaaaacatcacactaaaacttcaacctcatcaactacggatcaagacttggatgcatttctcctgggggacagtgatgatgatccagatcatgatggtggggactctgatgatgatttcgacaaattagtggacggatcggatgaagagaaggacaagttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

389

Amino Acids

44.41

Weight (kDa)

4.65

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccII CGCG 4 cut(s) 24, 77, 137, 343
AciI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 137, 212, 215
AcsI RAATTY 2 cut(s) 438, 488
AcvI CACGTG 1 cut(s) 470
AcyI GRCGYC 2 cut(s) 27, 180
AfeI AGCGCT 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 6 cut(s) 316, 444, 620, 672, 977, 1029
AhlI ACTAGT 1 cut(s) 511
AjnI CCWGG 2 cut(s) 711, 1068
AluBI AGCT 2 cut(s) 85, 891
AluI AGCT 2 cut(s) 85, 891
Alw26I GTCTC 2 cut(s) 103, 276
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 2 cut(s) 438, 488
AsiSI GCGATCGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 77, 117
AsuHPI GGTGA 1 cut(s) 259
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 470
BbvI GCAGC 1 cut(s) 214
BccI CCATC 2 cut(s) 737, 1094
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 713, 1070
BcoDI GTCTC 2 cut(s) 103, 276
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 217
BglI GCCNNNNNGGC 2 cut(s) 38, 140
BisI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
BlsI GCNGC 6 cut(s) 26, 43, 74, 136, 204, 214
Bme1390I CCNGG 2 cut(s) 713, 1070
BmiI GGNNCC 2 cut(s) 606, 963
BmrFI CCNGG 2 cut(s) 713, 1070
BmsI GCATC 2 cut(s) 691, 1048
BoxI GACNNNNGTC 1 cut(s) 305
BpmI CTGGAG 2 cut(s) 572, 929
Bsa29I ATCGAT 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 470
BsaBI GATNNNNATC 4 cut(s) 729, 735, 1086, 1092
BsaHI GRCGYC 2 cut(s) 27, 180
BsaJI CCNNGG 7 cut(s) 22, 33, 120, 135, 270, 712, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse8I GATNNNNATC 4 cut(s) 729, 735, 1086, 1092
BseBI CCWGG 2 cut(s) 713, 1070
BseCI ATCGAT 1 cut(s) 788
BseDI CCNNGG 7 cut(s) 22, 33, 120, 135, 270, 712, 1069
BseGI GGATG 3 cut(s) 706, 1063, 1153
BseJI GATNNNNATC 4 cut(s) 729, 735, 1086, 1092
BseRI GAGGAG 2 cut(s) 50, 287
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 4 cut(s) 24, 77, 137, 343
Bsh1285I CGRYCG 4 cut(s) 53, 69, 429, 884
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 788
BsiEI CGRYCG 4 cut(s) 53, 69, 429, 884
BslFI GGGAC 4 cut(s) 731, 764, 1088, 1121
BsmAI GTCTC 2 cut(s) 103, 276
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 4 cut(s) 731, 764, 1088, 1121
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 22
BspACI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 137, 212, 215
BspANI GGCC 1 cut(s) 143
BspDI ATCGAT 1 cut(s) 788
BspFNI CGCG 4 cut(s) 24, 77, 137, 343
BspHI TCATGA 2 cut(s) 739, 1096
BspLI GGNNCC 2 cut(s) 606, 963
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 217
BssECI CCNNGG 7 cut(s) 22, 33, 120, 135, 270, 712, 1069
BssNI GRCGYC 2 cut(s) 27, 180
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 713, 1070
Bst4CI ACNGT 6 cut(s) 364, 430, 722, 819, 885, 1079
Bst6I CTCTTC 2 cut(s) 333, 1146
BstACI GRCGYC 2 cut(s) 27, 180
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 4 cut(s) 22, 153, 408, 863
BstDSI CCRYGG 2 cut(s) 22, 135
BstF5I GGATG 3 cut(s) 706, 1063, 1153
BstFNI CGCG 4 cut(s) 24, 77, 137, 343
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 77, 117
BstMAI GTCTC 2 cut(s) 103, 276
BstMCI CGRYCG 4 cut(s) 53, 69, 429, 884
BstMWI GCNNNNNNNGC 5 cut(s) 38, 140, 202, 403, 858
BstNI CCWGG 2 cut(s) 713, 1070
BstNSI RCATGY 2 cut(s) 410, 865
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 711, 1068
BstSFI CTRYAG 1 cut(s) 200
BstUI CGCG 4 cut(s) 24, 77, 137, 343
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 4 cut(s) 58, 247, 382, 837
BstYI RGATCY 4 cut(s) 58, 247, 382, 837
Bsu15I ATCGAT 1 cut(s) 788
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 788
BtgI CCRYGG 2 cut(s) 22, 135
BtsCI GGATG 3 cut(s) 706, 1063, 1153
BtsIMutI CAGTG 2 cut(s) 727, 1084
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 4 cut(s) 22, 153, 408, 863
CciI TCATGA 2 cut(s) 739, 1096
CfoI GCGC 2 cut(s) 77, 117
Cfr42I CCGCGG 2 cut(s) 25, 138
ClaI ATCGAT 1 cut(s) 788
CseI GACGC 2 cut(s) 16, 188
CviAII CATG 5 cut(s) 407, 524, 740, 862, 1097
CviJI RGCY 7 cut(s) 20, 85, 134, 143, 155, 205, 891
CviKI_1 RGCY 7 cut(s) 20, 85, 134, 143, 155, 205, 891
Eam1104I CTCTTC 2 cut(s) 333, 1146
EarI CTCTTC 2 cut(s) 333, 1146
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 711, 1068
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 2 cut(s) 706, 1063
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 5 cut(s) 410, 527, 743, 865, 1100
FaqI GGGAC 4 cut(s) 731, 764, 1088, 1121
FatI CATG 5 cut(s) 406, 523, 739, 861, 1096
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
FokI GGATG 3 cut(s) 713, 1070, 1160
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
FspBI CTAG 1 cut(s) 512
GlaI GCGC 2 cut(s) 76, 116
GluI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
GsuI CTGGAG 2 cut(s) 572, 929
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 1 cut(s) 143
HgaI GACGC 2 cut(s) 16, 188
HhaI GCGC 2 cut(s) 77, 117
Hin1I GRCGYC 2 cut(s) 27, 180
Hin1II CATG 5 cut(s) 410, 527, 743, 865, 1100
Hin6I GCGC 2 cut(s) 75, 115
HinP1I GCGC 2 cut(s) 75, 115
HincII GTYRAC 3 cut(s) 517, 573, 930
HindII GTYRAC 3 cut(s) 517, 573, 930
HinfI GANTC 6 cut(s) 220, 264, 345, 752, 800, 1109
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 6 cut(s) 467, 517, 573, 781, 930, 1138
Hpy188I TCNGA 8 cut(s) 91, 103, 263, 352, 757, 807, 1114, 1147
Hpy8I GTNNAC 6 cut(s) 467, 517, 573, 781, 930, 1138
Hpy99I CGWCG 5 cut(s) 32, 182, 196, 434, 889
HpyAV CCTTC 2 cut(s) 238, 1150
HpyCH4III ACNGT 6 cut(s) 364, 430, 722, 819, 885, 1079
HpyCH4IV ACGT 4 cut(s) 311, 354, 469, 809
HpyCH4V TGCA 4 cut(s) 202, 704, 814, 1061
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 140, 202, 403, 858
HpySE526I ACGT 4 cut(s) 311, 354, 469, 809
Hsp92I GRCGYC 2 cut(s) 27, 180
Hsp92II CATG 5 cut(s) 410, 527, 743, 865, 1100
HspAI GCGC 2 cut(s) 75, 115
KspAI GTTAAC 1 cut(s) 517
KspI CCGCGG 2 cut(s) 25, 138
LmnI GCTCC 2 cut(s) 122, 193
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 2 cut(s) 691, 1048
MaeI CTAG 1 cut(s) 512
MaeII ACGT 4 cut(s) 311, 354, 469, 809
MaeIII GTNAC 3 cut(s) 307, 364, 819
MboII GAAGA 4 cut(s) 320, 659, 1016, 1163
MfeI CAATTG 1 cut(s) 938
MflI RGATCY 4 cut(s) 58, 247, 382, 837
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 9 cut(s) 170, 438, 446, 458, 488, 581, 773, 938, 1130
MlyI GAGTC 2 cut(s) 746, 1103
MmeI TCCRAC 3 cut(s) 114, 126, 383
Mph1103I ATGCAT 2 cut(s) 706, 1063
MseI TTAA 4 cut(s) 449, 516, 561, 918
MslI CAYNNNNRTG 2 cut(s) 744, 1101
MspA1I CMGCKG 2 cut(s) 24, 137
MspR9I CCNGG 2 cut(s) 713, 1070
MunI CAATTG 1 cut(s) 938
MvaI CCWGG 2 cut(s) 713, 1070
MvnI CGCG 4 cut(s) 24, 77, 137, 343
MwoI GCNNNNNNNGC 5 cut(s) 38, 140, 202, 403, 858
NlaIII CATG 5 cut(s) 410, 527, 743, 865, 1100
NlaIV GGNNCC 2 cut(s) 606, 963
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 3 cut(s) 307, 364, 819
NsiI ATGCAT 2 cut(s) 706, 1063
NspI RCATGY 2 cut(s) 410, 865
PaeI GCATGC 2 cut(s) 410, 865
PagI TCATGA 2 cut(s) 739, 1096
PaqCI CACCTGC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 4 cut(s) 220, 264, 345, 800
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 6 cut(s) 26, 43, 74, 136, 204, 214
Ple19I CGATCG 2 cut(s) 53, 69
PleI GAGTC 2 cut(s) 746, 1103
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 2 cut(s) 746, 1103
Ppu21I YACGTR 1 cut(s) 470
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 711, 1068
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 2 cut(s) 711, 1068
PspN4I GGNNCC 2 cut(s) 606, 963
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 4 cut(s) 58, 247, 382, 837
PsyI GACNNNGTC 1 cut(s) 95
PvuI CGATCG 2 cut(s) 53, 69
RgaI GCGATCGC 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 744, 1101
SacII CCGCGG 2 cut(s) 25, 138
SaqAI TTAA 4 cut(s) 449, 516, 561, 918
SatI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
SchI GAGTC 2 cut(s) 746, 1103
ScrFI CCNGG 2 cut(s) 713, 1070
SduI GDGCHC 1 cut(s) 22
SfaAI GCGATCGC 1 cut(s) 53
SfaNI GCATC 2 cut(s) 691, 1048
SfcI CTRYAG 1 cut(s) 200
Sfr303I CCGCGG 2 cut(s) 25, 138
SgfI GCGATCGC 1 cut(s) 53
SgrBI CCGCGG 2 cut(s) 25, 138
SmiMI CAYNNNNRTG 2 cut(s) 744, 1101
SpeI ACTAGT 1 cut(s) 511
SphI GCATGC 2 cut(s) 410, 865
Sse9I AATT 9 cut(s) 170, 438, 446, 458, 488, 581, 773, 938, 1130
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 137, 212, 215
SspMI CTAG 1 cut(s) 512
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 711, 1068
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 6 cut(s) 364, 430, 722, 819, 885, 1079
TaiI ACGT 4 cut(s) 314, 357, 472, 812
TaqI TCGA 7 cut(s) 425, 432, 768, 788, 880, 887, 1125
TaqII GACCGA 1 cut(s) 494
TasI AATT 9 cut(s) 170, 438, 446, 458, 488, 581, 773, 938, 1130
TauI GCSGC 5 cut(s) 27, 44, 75, 137, 215
TfiI GAWTC 4 cut(s) 220, 264, 345, 800
Tru1I TTAA 4 cut(s) 449, 516, 561, 918
Tru9I TTAA 4 cut(s) 449, 516, 561, 918
TscAI CASTG 2 cut(s) 727, 1084
TseFI GTSAC 3 cut(s) 307, 364, 819
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 3 cut(s) 307, 364, 819
TspDTI ATGAA 3 cut(s) 471, 496, 1164
TspGWI ACGGA 8 cut(s) 180, 309, 404, 701, 798, 859, 1058, 1155
TspRI CASTG 2 cut(s) 727, 1084
Tth111I GACNNNGTC 1 cut(s) 95
XapI RAATTY 2 cut(s) 438, 488
XceI RCATGY 2 cut(s) 410, 865
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 2 cut(s) 706, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.