Rroxscaffold_5G00378470

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003016
Physical Location & Seq
Reverse (-)
58929559 .. 58931754
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378470.1

Sequence Viewer

Length: 903 bp
ATGGAAGACCTGTGGAAGCGAGCCAAGAGCTTCGCGGAAGAAGCCGCCAAGAAATCCCAGACCATCACCACCTCCTCCGCCTCCGCCAAAATCTCCGACTTAGTCTCCGAGACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCCTCCAAGAAAGCCGACGAGATCAAATCCGCCGCCCTCAAGCAAGCCGATCAGATCAAGTCTCTCTCCGTCTCCGAGATCATACCTCCTCAGCTCTCCAACCTCTCCCTCGTCAACTCCTCCTCCTCCTCCTCCTCCGCCTCCGCCTCGGTCAATGAGCCTTCGGCTGAGGAGCTTCAGAAGTTTGGAGTCTCCGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGATACCTTCAAGCACTTCCCGATCCAAGATGAAGCGGAGGAGGTTTCTGAGGTGCCGACTACGGCGTCGAATGTGAGGAAGGATCTGACTGAGTGGCAGGAGCGCCATGCCACTCTGGTTCTCACTACTGTTAAGGAGATTTCGAGGTTAAGATATGAACTGTGCCCACGTGTTATGAAAGAACGAAGATTCTGGAGGATATATTTTACCCTTGTGAGCAGTCATGTGGCTCCATATGAGAAGCAATATATGGAGGAGTTGAAGCTCAAGGAAGCAGAGCAATTGGAAGATGATAAAGCGAAGCAAACACCTGTTGTTGGAGAGGCTGATAAAGCAGAAGGAAGTGAAACAAACAAGAAGAGCGTAACTTCCAAATCTTCATCAACTGAGCAGGACTTGGATACATTCCTTTTGGGGGATCTTGAAGACAGCGATGGGGGTCAAGATGATGGCAACGACAATTTTGATGATGATTTCGACAAGATTGGCGATTCGGATGTTGATGATGAAAAGCACGTGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

300

Amino Acids

33.41

Weight (kDa)

4.76

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 154 - 201 1.8e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 427
AccII CGCG 2 cut(s) 35, 129
AclWI GGATC 4 cut(s) 117, 391, 465, 801
AcuI CTGAAG 1 cut(s) 305
AcvI CACGTG 2 cut(s) 545, 892
AcyI GRCGYC 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 692, 790
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 3 cut(s) 385, 637, 800
AluBI AGCT 4 cut(s) 30, 238, 319, 640
AluI AGCT 4 cut(s) 30, 238, 319, 640
Alw26I GTCTC 6 cut(s) 104, 109, 210, 220, 340, 345
AlwI GGATC 4 cut(s) 117, 391, 465, 801
AoxI GGCC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 480
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 427
BbrPI CACGTG 2 cut(s) 545, 892
BbsI GAAGAC 2 cut(s) 12, 807
BbvCI CCTCAGC 2 cut(s) 234, 312
BccI CCATC 3 cut(s) 71, 803, 818
BceAI ACGGC 1 cut(s) 453
BciVI GTATCC 1 cut(s) 769
BcoDI GTCTC 6 cut(s) 104, 109, 210, 220, 340, 345
BfoI RGCGCY 1 cut(s) 481
BfuI GTATCC 1 cut(s) 769
BglI GCCNNNNNGGC 1 cut(s) 143
BisI GCNGC 3 cut(s) 45, 138, 177
BlsI GCNGC 3 cut(s) 46, 139, 178
BmiI GGNNCC 2 cut(s) 429, 606
BpiI GAAGAC 2 cut(s) 12, 807
BpmI CTGGAG 1 cut(s) 589
Bpu10I CCTNAGC 2 cut(s) 234, 312
BpuEI CTTGAG 2 cut(s) 167, 626
BsaAI YACGTR 2 cut(s) 545, 892
BsaHI GRCGYC 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 141, 291
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 790
BseDI CCNNGG 2 cut(s) 141, 291
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 2 cut(s) 692, 790
BseMII CTCAG 6 cut(s) 248, 303, 361, 414, 456, 753
BseSI GKGCMC 1 cut(s) 542
Bsh1236I CGCG 2 cut(s) 35, 129
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 427
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 2 cut(s) 692, 790
BsmAI GTCTC 6 cut(s) 104, 109, 210, 220, 340, 345
BsmBI CGTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 6 cut(s) 247, 304, 360, 415, 457, 754
BspFNI CGCG 2 cut(s) 35, 129
BspLI GGNNCC 2 cut(s) 429, 606
BspPI GGATC 4 cut(s) 117, 391, 465, 801
BspQI GCTCTTC 1 cut(s) 728
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 141, 291
BssMI GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
BssNI GRCGYC 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 505, 537
Bst6I CTCTTC 1 cut(s) 728
BstACI GRCGYC 1 cut(s) 440
BstBAI YACGTR 2 cut(s) 545, 892
BstC8I GCNNGC 2 cut(s) 21, 189
BstDEI CTNAG 7 cut(s) 100, 234, 312, 347, 423, 465, 762
BstF5I GGATG 1 cut(s) 877
BstFNI CGCG 2 cut(s) 35, 129
BstH2I RGCGCY 1 cut(s) 481
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 9 cut(s) 125, 168, 196, 201, 225, 346, 399, 460, 796
BstMAI GTCTC 6 cut(s) 104, 109, 210, 220, 340, 345
BstMBI GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
BstMWI GCNNNNNNNGC 3 cut(s) 41, 143, 707
BstSLI GKGCMC 1 cut(s) 542
BstUI CGCG 2 cut(s) 35, 129
BstV2I GAAGAC 2 cut(s) 12, 807
BstX2I RGATCY 2 cut(s) 457, 793
BstYI RGATCY 2 cut(s) 457, 793
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 822
BtsCI GGATG 1 cut(s) 877
Cac8I GCNNGC 2 cut(s) 21, 189
CfoI GCGC 1 cut(s) 480
CseI GACGC 1 cut(s) 429
CviAII CATG 2 cut(s) 482, 599
DdeI CTNAG 7 cut(s) 100, 234, 312, 347, 423, 465, 762
DpnI GATC 9 cut(s) 124, 167, 195, 200, 224, 345, 398, 459, 795
DpnII GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
EciI GGCGGA 5 cut(s) 67, 73, 163, 271, 277
Eco147I AGGCCT 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 305
Eco72I CACGTG 2 cut(s) 545, 892
Esp3I CGTCTC 1 cut(s) 220
FaeI CATG 2 cut(s) 485, 602
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 481, 598
FauI CCCGC 1 cut(s) 134
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 3 cut(s) 45, 138, 177
FokI GGATG 1 cut(s) 884
Fsp4HI GCNGC 3 cut(s) 45, 138, 177
GlaI GCGC 1 cut(s) 479
GluI GCNGC 3 cut(s) 45, 138, 177
GsuI CTGGAG 1 cut(s) 589
HaeII RGCGCY 1 cut(s) 481
HaeIII GGCC 1 cut(s) 146
HgaI GACGC 1 cut(s) 429
HhaI GCGC 1 cut(s) 480
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 2 cut(s) 485, 602
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 333, 366, 564, 866
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 4 cut(s) 394, 568, 797, 818
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 3 cut(s) 164, 344, 445
HpyAV CCTTC 4 cut(s) 315, 391, 448, 707
HpyCH4III ACNGT 2 cut(s) 505, 537
HpyCH4IV ACGT 2 cut(s) 544, 891
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 143, 707
HpyF3I CTNAG 7 cut(s) 100, 234, 312, 347, 423, 465, 762
HpySE526I ACGT 2 cut(s) 544, 891
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 2 cut(s) 485, 602
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 3 cut(s) 316, 475, 610
LpnPI CCDG 7 cut(s) 23, 71, 458, 476, 553, 699, 752
MaeII ACGT 2 cut(s) 544, 891
MaeIII GTNAC 1 cut(s) 739
MalI GATC 9 cut(s) 124, 167, 195, 200, 224, 345, 398, 459, 795
MboI GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
MboII GAAGA 7 cut(s) 17, 50, 573, 674, 744, 745, 812
MfeI CAATTG 1 cut(s) 656
MflI RGATCY 2 cut(s) 457, 793
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 2 cut(s) 656, 835
MlyI GAGTC 2 cut(s) 342, 360
MmeI TCCRAC 4 cut(s) 120, 267, 363, 673
MseI TTAA 2 cut(s) 507, 524
MunI CAATTG 1 cut(s) 656
MvnI CGCG 2 cut(s) 35, 129
MwoI GCNNNNNNNGC 3 cut(s) 41, 143, 707
NdeI CATATG 1 cut(s) 610
NdeII GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
NlaIII CATG 2 cut(s) 485, 602
NlaIV GGNNCC 2 cut(s) 429, 606
NmeAIII GCCGAG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 728
PfeI GAWTC 2 cut(s) 564, 866
PflFI GACNNNGTC 2 cut(s) 101, 356
PkrI GCNGC 3 cut(s) 46, 139, 178
PleI GAGTC 2 cut(s) 341, 360
PmaCI CACGTG 2 cut(s) 545, 892
PmlI CACGTG 2 cut(s) 545, 892
PpsI GAGTC 2 cut(s) 341, 360
Ppu21I YACGTR 2 cut(s) 545, 892
PspCI CACGTG 2 cut(s) 545, 892
PspN4I GGNNCC 2 cut(s) 429, 606
PsuI RGATCY 2 cut(s) 457, 793
PsyI GACNNNGTC 2 cut(s) 101, 356
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 2 cut(s) 507, 524
SatI GCNGC 3 cut(s) 45, 138, 177
Sau3AI GATC 9 cut(s) 122, 165, 193, 198, 222, 343, 396, 457, 793
SchI GAGTC 2 cut(s) 342, 360
SduI GDGCHC 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 182, 641
SmoI CTYRAG 2 cut(s) 182, 641
Sse9I AATT 2 cut(s) 656, 835
SseBI AGGCCT 1 cut(s) 146
StuI AGGCCT 1 cut(s) 146
TaaI ACNGT 2 cut(s) 505, 537
TaiI ACGT 2 cut(s) 547, 894
TaqI TCGA 3 cut(s) 443, 518, 852
TaqII GACCGA 1 cut(s) 283
TasI AATT 2 cut(s) 656, 835
TauI GCSGC 3 cut(s) 47, 140, 179
TfiI GAWTC 2 cut(s) 564, 866
Tru1I TTAA 2 cut(s) 507, 524
Tru9I TTAA 2 cut(s) 507, 524
TspDTI ATGAA 5 cut(s) 420, 546, 566, 744, 897
TspGWI ACGGA 1 cut(s) 202
Tth111I GACNNNGTC 2 cut(s) 101, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.