Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Forward (+)

58661428 .. 58663707

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0460100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCTTCTCGCTGCAGATCTTTTTCAAGACCCGCCTTTTCTTTTCTCAAATCCACCGTCAACAAACCACCTCTCAAGTCCAGACCCATCTCTTCTCTCCCGTCGACCCCATCACTCTCAAGGCCGGCTCCTCAGTTGGGTTGTCTTCAATCTCTGCTTCCATTTCACACGGCGGTCTCTTCAGCTCGGCTGACGTCATGCCTCGGCATTGACTCGAGGAGCTCGAGGTCGTTGTCTCAGGGTACGCTCGGTGCAAACCCAGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

89

Amino Acids

9.36

Weight (kDa)

11.79

Isoelectric Point (pI)

90.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	104
AciI	CCGC	2 cut(s)	33, 173
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	27, 149
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	2 cut(s)	185, 222
AluI	AGCT	2 cut(s)	185, 222
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	181, 240
Ama87I	CYCGRG	2 cut(s)	214, 223
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	12
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AvaI	CYCGRG	2 cut(s)	214, 223
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	224
BccI	CCATC	2 cut(s)	95, 118
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	181, 240
BfmI	CTRYAG	1 cut(s)	13
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	261
BmeT110I	CYCGRG	2 cut(s)	214, 223
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	59, 103
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	202, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	202, 259
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	146, 251
BseRI	GAGGAG	2 cut(s)	120, 232
BshFI	GGCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	2 cut(s)	214, 223
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	181, 240
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	2 cut(s)	214, 223
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	2 cut(s)	33, 173
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	145, 250
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	202, 259
BssMI	GATC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	97, 184
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	132, 237
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	2 cut(s)	181, 240
BstMBI	GATC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	6 cut(s)	5, 124, 128, 185, 190, 222
CviKI_1	RGCY	6 cut(s)	5, 124, 128, 185, 190, 222
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	132, 237
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	97, 184
EarI	CTCTTC	2 cut(s)	97, 184
Ecl136II	GAGCTC	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	214, 223
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	1 cut(s)	201
FaiI	YATR	1 cut(s)	199
FatI	CATG	1 cut(s)	197
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	201
HincII	GTYRAC	2 cut(s)	61, 105
HindII	GTYRAC	2 cut(s)	61, 105
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	61, 105
Hpy188III	TCNNGA	2 cut(s)	27, 81
Hpy8I	GTNNAC	2 cut(s)	61, 105
Hpy99I	CGWCG	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	15, 254
HpyF3I	CTNAG	2 cut(s)	132, 237
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	133, 219
LpnPI	CCDG	4 cut(s)	94, 138, 224, 246
MaeII	ACGT	1 cut(s)	194
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	3 cut(s)	84, 137, 171
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	81, 141, 210, 212, 219
MroNI	GCCGGC	1 cut(s)	124
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
NaeI	GCCGGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	17
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	2 cut(s)	166, 183
PaeR7I	CTCGAG	2 cut(s)	214, 223
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	129
PspXI	VCTCGAGB	2 cut(s)	214, 223
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	224
SalI	GTCGAC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	5 cut(s)	73, 187, 197, 224, 230
SfcI	CTRYAG	1 cut(s)	13
Sfr274I	CTCGAG	2 cut(s)	214, 223
SlaI	CTCGAG	2 cut(s)	214, 223
SmlI	CTYRAG	4 cut(s)	74, 118, 214, 223
SmoI	CTYRAG	4 cut(s)	74, 118, 214, 223
SsiI	CCGC	2 cut(s)	33, 173
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	104, 215, 224
TseI	GCWGC	1 cut(s)	12
XhoI	CTCGAG	2 cut(s)	214, 223
XmiI	GTMKAC	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.