Rh7CG062500

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003016
Physical Location & Seq
Forward (+)
4533143 .. 4537947
4805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG062500.1

Sequence Viewer

Length: 780 bp
ATGGAGTTTTGGAACAGAGCCCGCGGCGTCGCCGAGGAGGCGGCGAAGCGATCGCAGGATCTCACGATCGGCGGCGCGTGGAAGCTCTCCGACATCGTCTCCGACACCGCCAAGCGCTCCAAGGAGATCATCGCCGCCGAGGCCTCCAAGCGAGCCGATCACATCAAGCAATTTGCCGACGCCTTTGCTCCGTCGTTACCGCAGCCACCTGCGGCGGAGAGTCCACAACAACAAGAACAAGAGAAGGATCTGGAAGCGTTTGGAATCACCGAGGAGTTGAGAGACTTCGCTAACGGAATGACTTTTGTCACGTTCAAAGATTTTCCTCTTCCAGATGATACACGATTCTCTGACGTTCCAACAGTCACAAATGTTAGGCAGGATCTTACGGAGTGGCAAGAAAAGCACGCCAATCTTGTTCTTTTGACCGTCGAGGAAATTTCAAAATTAAGATATGAATTGTGTCCACGTGTTATGACCGAAAGGAAATTTTGGAGGATATATTTCATACTAGTTAACAATCATGTCGCACCCTATGAGAAGCGTTATCTGGAGGAAGTTAAGCAAAAGTCAACTGAACAATTTTTAGATGACAGAGTAAAGGAACCTACTAAAGTTGAAACAACTTCTAAAGCAGAGGATAAGGAAGAAAAACATCACACTAAAACTTCAACCTCATCAACTACAGATCAAGACTTGGATGCATTTCTCCTGGGGGACAGTGATGATGATCCAGGTATCTTAGAGTGTTTCTTTATTAGATACCTAGCTTGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

259

Amino Acids

29.85

Weight (kDa)

4.92

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 130 - 176 2.2e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccII CGCG 2 cut(s) 24, 77
AciI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 200, 212, 215
AclWI GGATC 4 cut(s) 66, 255, 390, 725
AcsI RAATTY 2 cut(s) 438, 488
AcvI CACGTG 1 cut(s) 470
AcyI GRCGYC 2 cut(s) 27, 180
AfeI AGCGCT 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 4 cut(s) 316, 444, 620, 672
AhlI ACTAGT 1 cut(s) 511
AjnI CCWGG 2 cut(s) 711, 733
AluBI AGCT 2 cut(s) 85, 770
AluI AGCT 2 cut(s) 85, 770
Alw26I GTCTC 2 cut(s) 103, 276
AlwI GGATC 4 cut(s) 66, 255, 390, 725
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 2 cut(s) 141, 773
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 2 cut(s) 438, 488
AsiSI GCGATCGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 77, 117
AsuHPI GGTGA 1 cut(s) 259
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 470
BbvI GCAGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 713, 735
BcoDI GTCTC 2 cut(s) 103, 276
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 2 cut(s) 512, 767
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 217
BglI GCCNNNNNGGC 2 cut(s) 38, 140
BisI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
BlsI GCNGC 6 cut(s) 26, 43, 74, 136, 204, 214
Bme1390I CCNGG 2 cut(s) 713, 735
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 2 cut(s) 713, 735
BmsI GCATC 1 cut(s) 691
BoxI GACNNNNGTC 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 572
BsaAI YACGTR 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 729
BsaHI GRCGYC 2 cut(s) 27, 180
BsaJI CCNNGG 6 cut(s) 22, 33, 120, 138, 270, 712
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse8I GATNNNNATC 1 cut(s) 729
BseBI CCWGG 2 cut(s) 713, 735
BseDI CCNNGG 6 cut(s) 22, 33, 120, 138, 270, 712
BseGI GGATG 1 cut(s) 706
BseJI GATNNNNATC 1 cut(s) 729
BseRI GAGGAG 2 cut(s) 50, 287
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 24, 77
Bsh1285I CGRYCG 2 cut(s) 53, 69
BshFI GGCC 2 cut(s) 143, 775
BsiEI CGRYCG 2 cut(s) 53, 69
BslFI GGGAC 1 cut(s) 731
BsmAI GTCTC 2 cut(s) 103, 276
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 2 cut(s) 143, 775
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
BspACI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 200, 212, 215
BspANI GGCC 2 cut(s) 143, 775
BspFNI CGCG 2 cut(s) 24, 77
BspLI GGNNCC 1 cut(s) 606
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 4 cut(s) 66, 255, 390, 725
BssECI CCNNGG 6 cut(s) 22, 33, 120, 138, 270, 712
BssMI GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
BssNI GRCGYC 2 cut(s) 27, 180
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 713, 735
Bst4CI ACNGT 3 cut(s) 364, 430, 722
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 27, 180
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 22, 153, 408
BstDEI CTNAG 1 cut(s) 742
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 2 cut(s) 24, 77
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 77, 117
BstKTI GATC 9 cut(s) 53, 61, 69, 129, 160, 250, 385, 691, 733
BstMAI GTCTC 2 cut(s) 103, 276
BstMBI GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
BstMCI CGRYCG 2 cut(s) 53, 69
BstMWI GCNNNNNNNGC 3 cut(s) 38, 140, 403
BstNI CCWGG 2 cut(s) 713, 735
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 711, 733
BstSFI CTRYAG 1 cut(s) 684
BstUI CGCG 2 cut(s) 24, 77
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 3 cut(s) 58, 247, 382
BstYI RGATCY 3 cut(s) 58, 247, 382
BsuRI GGCC 2 cut(s) 143, 775
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 706
BtsIMutI CAGTG 1 cut(s) 727
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 22, 153, 408
CfoI GCGC 2 cut(s) 77, 117
Cfr42I CCGCGG 1 cut(s) 25
CseI GACGC 2 cut(s) 16, 188
CviAII CATG 1 cut(s) 524
CviJI RGCY 7 cut(s) 20, 85, 143, 155, 205, 770, 775
CviKI_1 RGCY 7 cut(s) 20, 85, 143, 155, 205, 770, 775
DdeI CTNAG 1 cut(s) 742
DpnI GATC 9 cut(s) 52, 60, 68, 128, 159, 249, 384, 690, 732
DpnII GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 711, 733
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 527
FaiI YATR 6 cut(s) 456, 476, 502, 509, 525, 537
FaqI GGGAC 1 cut(s) 731
FatI CATG 1 cut(s) 523
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
FokI GGATG 1 cut(s) 713
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
FspBI CTAG 2 cut(s) 512, 767
GlaI GCGC 2 cut(s) 76, 116
GluI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 2 cut(s) 143, 775
HgaI GACGC 2 cut(s) 16, 188
HhaI GCGC 2 cut(s) 77, 117
Hin1I GRCGYC 2 cut(s) 27, 180
Hin1II CATG 1 cut(s) 527
Hin6I GCGC 2 cut(s) 75, 115
HinP1I GCGC 2 cut(s) 75, 115
HincII GTYRAC 2 cut(s) 517, 573
HindII GTYRAC 2 cut(s) 517, 573
HinfI GANTC 3 cut(s) 220, 264, 345
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 4 cut(s) 224, 467, 517, 573
Hpy188I TCNGA 3 cut(s) 91, 103, 352
Hpy188III TCNNGA 5 cut(s) 64, 251, 332, 551, 692
Hpy8I GTNNAC 4 cut(s) 224, 467, 517, 573
Hpy99I CGWCG 4 cut(s) 32, 182, 196, 434
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 364, 430, 722
HpyCH4IV ACGT 3 cut(s) 311, 354, 469
HpyCH4V TGCA 1 cut(s) 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 140, 403
HpyF3I CTNAG 1 cut(s) 742
HpySE526I ACGT 3 cut(s) 311, 354, 469
Hsp92I GRCGYC 2 cut(s) 27, 180
Hsp92II CATG 1 cut(s) 527
HspAI GCGC 2 cut(s) 75, 115
KspAI GTTAAC 1 cut(s) 517
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
LmnI GCTCC 2 cut(s) 122, 193
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 691
MaeI CTAG 2 cut(s) 512, 767
MaeII ACGT 3 cut(s) 311, 354, 469
MaeIII GTNAC 3 cut(s) 195, 307, 364
MalI GATC 9 cut(s) 52, 60, 68, 128, 159, 249, 384, 690, 732
MboI GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
MboII GAAGA 2 cut(s) 320, 659
MflI RGATCY 3 cut(s) 58, 247, 382
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 170, 438, 446, 458, 488, 581
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 3 cut(s) 114, 126, 383
Mph1103I ATGCAT 1 cut(s) 706
MseI TTAA 4 cut(s) 449, 516, 561, 778
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 713, 735
MvaI CCWGG 2 cut(s) 713, 735
MvnI CGCG 2 cut(s) 24, 77
MwoI GCNNNNNNNGC 3 cut(s) 38, 140, 403
NdeII GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
NlaIII CATG 1 cut(s) 527
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 2 cut(s) 58, 163
NmuCI GTSAC 2 cut(s) 307, 364
NsiI ATGCAT 1 cut(s) 706
PaqCI CACCTGC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 143
PfeI GAWTC 2 cut(s) 264, 345
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 6 cut(s) 26, 43, 74, 136, 204, 214
Ple19I CGATCG 2 cut(s) 53, 69
PleI GAGTC 1 cut(s) 228
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 470
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 711, 733
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 2 cut(s) 711, 733
PspN4I GGNNCC 1 cut(s) 606
PsuI RGATCY 3 cut(s) 58, 247, 382
PsyI GACNNNGTC 1 cut(s) 95
PvuI CGATCG 2 cut(s) 53, 69
RgaI GCGATCGC 1 cut(s) 53
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 4 cut(s) 449, 516, 561, 778
SatI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
Sau3AI GATC 9 cut(s) 50, 58, 66, 126, 157, 247, 382, 688, 730
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 713, 735
SduI GDGCHC 1 cut(s) 22
SfaAI GCGATCGC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 684
Sfr303I CCGCGG 1 cut(s) 25
SgfI GCGATCGC 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 511
Sse9I AATT 6 cut(s) 170, 438, 446, 458, 488, 581
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 200, 212, 215
SspMI CTAG 2 cut(s) 512, 767
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 711, 733
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 3 cut(s) 364, 430, 722
TaiI ACGT 3 cut(s) 314, 357, 472
TaqI TCGA 1 cut(s) 432
TaqII GACCGA 1 cut(s) 494
TasI AATT 6 cut(s) 170, 438, 446, 458, 488, 581
TauI GCSGC 5 cut(s) 27, 44, 75, 137, 215
TfiI GAWTC 2 cut(s) 264, 345
Tru1I TTAA 4 cut(s) 449, 516, 561, 778
Tru9I TTAA 4 cut(s) 449, 516, 561, 778
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 2 cut(s) 307, 364
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 2 cut(s) 307, 364
TspDTI ATGAA 2 cut(s) 471, 496
TspGWI ACGGA 3 cut(s) 180, 309, 404
TspRI CASTG 1 cut(s) 727
Tth111I GACNNNGTC 1 cut(s) 95
XapI RAATTY 2 cut(s) 438, 488
XspI CTAG 2 cut(s) 512, 767
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.