AT1G69030

BEST Arabidopsis thaliana protein match is BSD domain-containing protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003016
Physical Location & Seq
Reverse (-)
25947236 .. 25949340
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69030.1

Sequence Viewer

Length: 954 bp
ATGGAAGATCTATGGAAGAGAGCGAAATCGTTTGCAGAAGAAGCAGCGAAGAAATCACAAACCATAACACTACAATCATCTTCAACAACATTCGTCAATCTCGTCACCGAAACCGCTAAAAAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCTGATTCGATCAATGTCTCCGAGTTCGTCGCCGAGACGGCGAAGAAGTCAAAGGAATTCGCTGCTGAGGTTTCAACGAAAGCGGATCAGCTCAAAGTCGTAGCATTGAAACAAGCTGATCAGATCCAGAATATAAAATCGATTGCCGACATTATACCTGGAGGATTAGGAGGATCAGGATCTGGTGGTGGTGGTTCTGAGATTTCTGAATCTGAGCTTGTTAGTTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAAAGGTTTGACATCTGCTACGTTCCAGGCTTTTCCTGAACAAGATGAATCGTCGGAAGTTTCTGATTTGGAAACAAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGACATGCCACTCTTGTTCTTGGTTCTGTCAAGCAAATTTCGAAGTTGAGATATGAACTATGCCCACGAGTTATGAAAGAAAGGAGGTTCTGGAGGATATACTTTACCTTAGTGAGCACTCATGTTGCACCATATGAAAGGAAGTACATGGAGGAACTTAGGAACAAAGCAGAGAGTAAAGATGAAGAAGCTAAGAAGAGTCCAGGGCTTGGAAGGACAGAATCAGCTGAAAAGAACAGAATATCTACTGCATCGTCTGAGCAAGATCTCGATACATTCCTGCTGGGAGATCTAGAAGACAGTGACGAAGCTCCTGATGATGGTGATGGTGATGATGGAGGAAGCCTGGGTGATGATGACTTTGACAAGATTGGCAACTCTGATGTTGAGGAAGAGAAAGAATCAAATGCAGCAAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

317

Amino Acids

34.77

Weight (kDa)

4.7

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 171 - 219 1.5e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 740
AciI CCGC 2 cut(s) 114, 239
AclWI GGATC 5 cut(s) 249, 274, 337, 343, 519
AcsI RAATTY 2 cut(s) 212, 567
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 2 cut(s) 740, 851
AgsI TTSAA 3 cut(s) 84, 231, 265
AjnI CCWGG 4 cut(s) 313, 438, 733, 876
AluBI AGCT 8 cut(s) 146, 158, 247, 272, 373, 722, 758, 842
AluI AGCT 8 cut(s) 146, 158, 247, 272, 373, 722, 758, 842
Alw21I GWGCWC 1 cut(s) 650
Alw26I GTCTC 3 cut(s) 178, 185, 526
AlwI GGATC 5 cut(s) 249, 274, 337, 343, 519
AlwNI CAGNNNCTG 1 cut(s) 338
ApeKI GCWGC 3 cut(s) 44, 218, 941
ApoI RAATTY 2 cut(s) 212, 567
AsuHPI GGTGA 4 cut(s) 97, 866, 872, 893
AsuII TTCGAA 1 cut(s) 572
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 834
Bbv12I GWGCWC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 56, 205
BccI CCATC 3 cut(s) 845, 851, 860
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 4 cut(s) 315, 440, 735, 878
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 3 cut(s) 178, 185, 526
BfaI CTAG 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 194
BglII AGATCT 3 cut(s) 7, 796, 820
BisI GCNGC 3 cut(s) 45, 219, 942
BlsI GCNGC 3 cut(s) 46, 220, 943
Bme1390I CCNGG 4 cut(s) 315, 440, 735, 878
BmrFI CCNGG 4 cut(s) 315, 440, 735, 878
BmsI GCATC 1 cut(s) 791
BpiI GAAGAC 1 cut(s) 834
BpmI CTGGAG 2 cut(s) 336, 643
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 572
Bsa29I ATCGAT 1 cut(s) 296
BsaBI GATNNNNATC 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 734, 877
Bsc4I CCNNNNNNNGG 2 cut(s) 740, 851
Bse8I GATNNNNATC 1 cut(s) 334
BseBI CCWGG 4 cut(s) 315, 440, 735, 878
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 734, 877
BseJI GATNNNNATC 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 740, 851
BseMII CTCAG 5 cut(s) 213, 345, 360, 510, 780
BseXI GCAGC 2 cut(s) 56, 205
BseYI CCCAGC 1 cut(s) 814
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 650
BslI CCNNNNNNNGG 2 cut(s) 740, 851
BsmAI GTCTC 3 cut(s) 178, 185, 526
BsmBI CGTCTC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 650
BspACI CCGC 2 cut(s) 114, 239
BspCNI CTCAG 5 cut(s) 214, 346, 361, 511, 781
BspDI ATCGAT 1 cut(s) 296
BspPI GGATC 5 cut(s) 249, 274, 337, 343, 519
BspT104I TTCGAA 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 734, 877
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 4 cut(s) 315, 440, 735, 878
Bst4CI ACNGT 1 cut(s) 833
Bst6I CTCTTC 3 cut(s) 11, 722, 918
BstBI TTCGAA 1 cut(s) 572
BstDEI CTNAG 9 cut(s) 150, 222, 354, 369, 519, 640, 689, 723, 789
BstMAI GTCTC 3 cut(s) 178, 185, 526
BstMWI GCNNNNNNNGC 3 cut(s) 41, 143, 194
BstNI CCWGG 4 cut(s) 315, 440, 735, 878
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 4 cut(s) 313, 438, 733, 876
BstV1I GCAGC 2 cut(s) 56, 205
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 6 cut(s) 7, 279, 335, 511, 796, 820
BstYI RGATCY 6 cut(s) 7, 279, 335, 511, 796, 820
Bsu15I ATCGAT 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 838
CaiI CAGNNNCTG 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 483
Csp6I GTAC 1 cut(s) 676
CviAII CATG 3 cut(s) 536, 653, 679
CviQI GTAC 1 cut(s) 676
DdeI CTNAG 9 cut(s) 150, 222, 354, 369, 519, 640, 689, 723, 789
Eam1104I CTCTTC 3 cut(s) 11, 722, 918
EarI CTCTTC 3 cut(s) 11, 722, 918
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 4 cut(s) 313, 438, 733, 876
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 3 cut(s) 539, 656, 682
FatI CATG 3 cut(s) 535, 652, 678
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 45, 219, 942
Fsp4HI GCNGC 3 cut(s) 45, 219, 942
FspBI CTAG 1 cut(s) 824
GluI GCNGC 3 cut(s) 45, 219, 942
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 2 cut(s) 336, 643
HgaI GACGC 1 cut(s) 483
Hin1II CATG 3 cut(s) 539, 656, 682
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 6 cut(s) 161, 365, 461, 730, 752, 932
HphI GGTGA 4 cut(s) 97, 866, 872, 893
Hpy188III TCNNGA 8 cut(s) 140, 283, 333, 449, 622, 800, 824, 845
Hpy99I CGWCG 3 cut(s) 188, 469, 499
HpyAV CCTTC 2 cut(s) 502, 738
HpyCH4III ACNGT 1 cut(s) 833
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 4 cut(s) 35, 659, 782, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 143, 194
HpyF3I CTNAG 9 cut(s) 150, 222, 354, 369, 519, 640, 689, 723, 789
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 3 cut(s) 539, 656, 682
Ksp22I TGATCA 1 cut(s) 274
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 2 cut(s) 56, 205
LweI GCATC 1 cut(s) 791
MaeI CTAG 1 cut(s) 824
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 2 cut(s) 103, 833
MflI RGATCY 6 cut(s) 7, 279, 335, 511, 796, 820
MhlI GDGCHC 1 cut(s) 650
MluCI AATT 3 cut(s) 212, 567, 949
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 8 cut(s) 217, 311, 320, 609, 618, 676, 863, 913
MseI TTAA 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 758
MspR9I CCNGG 4 cut(s) 315, 440, 735, 878
MvaI CCWGG 4 cut(s) 315, 440, 735, 878
MwoI GCNNNNNNNGC 3 cut(s) 41, 143, 194
NdeI CATATG 1 cut(s) 664
NlaIII CATG 3 cut(s) 539, 656, 682
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 103, 833
NspI RCATGY 1 cut(s) 539
NspV TTCGAA 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 5 cut(s) 161, 365, 461, 752, 932
PflMI CCANNNNNTGG 1 cut(s) 740
PkrI GCNGC 3 cut(s) 46, 220, 943
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
Psp6I CCWGG 4 cut(s) 313, 438, 733, 876
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 4 cut(s) 313, 438, 733, 876
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 6 cut(s) 7, 279, 335, 511, 796, 820
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 45, 219, 942
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 4 cut(s) 315, 440, 735, 878
SduI GDGCHC 1 cut(s) 650
SfaNI GCATC 1 cut(s) 791
SfuI TTCGAA 1 cut(s) 572
Sse9I AATT 3 cut(s) 212, 567, 949
SsiI CCGC 2 cut(s) 114, 239
SspMI CTAG 1 cut(s) 824
StyD4I CCNGG 4 cut(s) 313, 438, 733, 876
TaaI ACNGT 1 cut(s) 833
TaiI ACGT 1 cut(s) 437
TaqI TCGA 6 cut(s) 141, 164, 296, 497, 572, 801
TasI AATT 3 cut(s) 212, 567, 949
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 5 cut(s) 161, 365, 461, 752, 932
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 2 cut(s) 103, 833
TseI GCWGC 3 cut(s) 44, 218, 941
Tsp45I GTSAC 2 cut(s) 103, 833
TspDTI ATGAA 5 cut(s) 474, 600, 620, 681, 729
TspRI CASTG 1 cut(s) 838
Van91I CCANNNNNTGG 1 cut(s) 740
XapI RAATTY 2 cut(s) 212, 567
XbaI TCTAGA 1 cut(s) 823
XceI RCATGY 1 cut(s) 539
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.