RLG00000005025

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003016
Physical Location & Seq
Reverse (-)
64418761 .. 64420938
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005025

Sequence Viewer

Length: 786 bp
ATGGAGTTTTGGAACAGAGCCCGCGGCGTCGCCGAGGAGGCGGCCAAGCGATCGCAGGATCTCACAATCGGCGGCGCGTGGAAGCTCTCCGACATCATCTCCGACACCGCCAAGCGCTCCAAGGAGATCATCGCCGCCGAGGCCTCCAAGCGAGCCGATCACATCAAGCAATTTGCCGACGCCTTTGCTCCGTCGCTACCGCAGCCACCTGCGGCGGAGAGTCCACAAGAACAAGAACAAGAACAAGAGAAGGATCTGGAAGCGTTTGGAATCACCGAGGAGTTGAGAGACTTCGCTAACGGGATGACTTTTGTCACGTTCAAAGATTTTCCTCTTCCAGATGATACACGATTCTCTGACGTTCCAACAGTCACAAATGTTAGGCAGGATCTTACGGAGTGGCAAAAAAAGCATGCCAATCTTGTTCTTTCAATCGTCGAGGAAATTTCAAAATTAAGATATGAATTGTGTCCACGTGTTATGACCGAAAGACAATTTTGGAGGATATATTTCATACTAGTTAACAATCATGTCGCACCCTATGAGAAGCATTATCTGGAGGAAGTTAAGCAAAAGTCAACTGAACAATTTTTAGATGACAGAGTAAAGGAACCTACTAAAGTTGAAACAACTTCTAAAGCAGAGGATAACGAAGAAAAACTTCACACTAAAACGTCAACCTCATCAACTACGGATCAAGACTTGGATGCATTTCTCCTGGGGGCCAGTGATGATGATCCAGGTATCTTAGAGTGTTTCTTTATTAGATACCTAGCCTGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

262

Amino Acids

30.03

Weight (kDa)

4.83

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 132 - 178 2.5e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccII CGCG 2 cut(s) 24, 77
AciI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 200, 212, 215
AclWI GGATC 5 cut(s) 66, 261, 396, 702, 731
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 444
AcvI CACGTG 1 cut(s) 476
AcyI GRCGYC 2 cut(s) 27, 180
AfeI AGCGCT 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 4 cut(s) 322, 432, 450, 626
AhlI ACTAGT 1 cut(s) 517
AjnI CCWGG 3 cut(s) 717, 739, 776
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 5 cut(s) 66, 261, 396, 702, 731
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 3 cut(s) 42, 141, 723
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 444
AsiSI GCGATCGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 660
AspLEI GCGC 2 cut(s) 77, 117
AspS9I GGNCC 1 cut(s) 723
AsuHPI GGTGA 1 cut(s) 265
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 476
BbvI GCAGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 3 cut(s) 719, 741, 778
BcoDI GTCTC 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 517
BfaI CTAG 2 cut(s) 518, 773
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 217
BglI GCCNNNNNGGC 2 cut(s) 38, 140
BisI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
BlsI GCNGC 6 cut(s) 26, 43, 74, 136, 204, 214
Bme1390I CCNGG 3 cut(s) 719, 741, 778
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 2 cut(s) 612, 724
BmrFI CCNGG 3 cut(s) 719, 741, 778
BmsI GCATC 1 cut(s) 697
BoxI GACNNNNGTC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 578
BsaAI YACGTR 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 2 cut(s) 27, 180
BsaJI CCNNGG 6 cut(s) 22, 33, 120, 138, 276, 718
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 3 cut(s) 719, 741, 778
BseDI CCNNGG 6 cut(s) 22, 33, 120, 138, 276, 718
BseGI GGATG 2 cut(s) 309, 712
BseJI GATNNNNATC 1 cut(s) 735
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 2 cut(s) 50, 293
BseXI GCAGC 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 24, 77
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 44, 143, 725
BsiEI CGRYCG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 3 cut(s) 44, 143, 725
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
BspACI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 200, 212, 215
BspANI GGCC 3 cut(s) 44, 143, 725
BspFNI CGCG 2 cut(s) 24, 77
BspLI GGNNCC 2 cut(s) 612, 724
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 5 cut(s) 66, 261, 396, 702, 731
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 6 cut(s) 22, 33, 120, 138, 276, 718
BssMI GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
BssNI GRCGYC 2 cut(s) 27, 180
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 3 cut(s) 719, 741, 778
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 2 cut(s) 27, 180
BstBAI YACGTR 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 22, 153, 414
BstDEI CTNAG 1 cut(s) 748
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 309, 712
BstFNI CGCG 2 cut(s) 24, 77
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 77, 117
BstKTI GATC 8 cut(s) 53, 61, 129, 160, 256, 391, 697, 739
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 4 cut(s) 38, 140, 202, 409
BstNI CCWGG 3 cut(s) 719, 741, 778
BstNSI RCATGY 1 cut(s) 416
BstPAI GACNNNNGTC 1 cut(s) 311
BstSCI CCNGG 3 cut(s) 717, 739, 776
BstUI CGCG 2 cut(s) 24, 77
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 3 cut(s) 58, 253, 388
BstYI RGATCY 3 cut(s) 58, 253, 388
BsuRI GGCC 3 cut(s) 44, 143, 725
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 2 cut(s) 309, 712
BtsIMutI CAGTG 1 cut(s) 733
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 22, 153, 414
CfoI GCGC 2 cut(s) 77, 117
Cfr13I GGNCC 1 cut(s) 723
Cfr42I CCGCGG 1 cut(s) 25
CseI GACGC 2 cut(s) 16, 188
CviAII CATG 2 cut(s) 413, 530
CviJI RGCY 9 cut(s) 20, 44, 85, 143, 155, 205, 725, 776, 781
CviKI_1 RGCY 9 cut(s) 20, 44, 85, 143, 155, 205, 725, 776, 781
DdeI CTNAG 1 cut(s) 748
DpnI GATC 8 cut(s) 52, 60, 128, 159, 255, 390, 696, 738
DpnII GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
EaeI YGGCCR 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 116
Eco72I CACGTG 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 717, 739, 776
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 416, 533
FaiI YATR 7 cut(s) 414, 462, 482, 508, 515, 531, 543
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FatI CATG 2 cut(s) 412, 529
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
FokI GGATG 2 cut(s) 316, 719
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
FspBI CTAG 2 cut(s) 518, 773
GlaI GCGC 2 cut(s) 76, 116
GluI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 3 cut(s) 44, 143, 725
HgaI GACGC 2 cut(s) 16, 188
HhaI GCGC 2 cut(s) 77, 117
Hin1I GRCGYC 2 cut(s) 27, 180
Hin1II CATG 2 cut(s) 416, 533
Hin6I GCGC 2 cut(s) 75, 115
HinP1I GCGC 2 cut(s) 75, 115
HincII GTYRAC 3 cut(s) 523, 579, 678
HindII GTYRAC 3 cut(s) 523, 579, 678
HinfI GANTC 3 cut(s) 220, 270, 351
HpaI GTTAAC 1 cut(s) 523
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 5 cut(s) 224, 473, 523, 579, 678
Hpy188I TCNGA 3 cut(s) 91, 103, 358
Hpy188III TCNNGA 4 cut(s) 257, 338, 557, 698
Hpy8I GTNNAC 5 cut(s) 224, 473, 523, 579, 678
Hpy99I CGWCG 4 cut(s) 32, 182, 196, 440
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 4 cut(s) 317, 360, 475, 674
HpyCH4V TGCA 1 cut(s) 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 140, 202, 409
HpyF3I CTNAG 1 cut(s) 748
HpySE526I ACGT 4 cut(s) 317, 360, 475, 674
Hsp92I GRCGYC 2 cut(s) 27, 180
Hsp92II CATG 2 cut(s) 416, 533
HspAI GCGC 2 cut(s) 75, 115
KspAI GTTAAC 1 cut(s) 523
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
LmnI GCTCC 2 cut(s) 122, 193
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 697
MaeI CTAG 2 cut(s) 518, 773
MaeII ACGT 4 cut(s) 317, 360, 475, 674
MaeIII GTNAC 2 cut(s) 313, 370
MalI GATC 8 cut(s) 52, 60, 128, 159, 255, 390, 696, 738
MboI GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
MboII GAAGA 2 cut(s) 326, 665
MflI RGATCY 3 cut(s) 58, 253, 388
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 170, 444, 452, 464, 494, 587
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 3 cut(s) 114, 126, 389
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 4 cut(s) 455, 522, 567, 784
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 719, 741, 778
MvaI CCWGG 3 cut(s) 719, 741, 778
MvnI CGCG 2 cut(s) 24, 77
MwoI GCNNNNNNNGC 4 cut(s) 38, 140, 202, 409
NdeII GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
NlaIII CATG 2 cut(s) 416, 533
NlaIV GGNNCC 2 cut(s) 612, 724
NmeAIII GCCGAG 2 cut(s) 58, 163
NmuCI GTSAC 2 cut(s) 313, 370
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PaqCI CACCTGC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 2 cut(s) 270, 351
PkrI GCNGC 6 cut(s) 26, 43, 74, 136, 204, 214
Ple19I CGATCG 1 cut(s) 53
PleI GAGTC 1 cut(s) 228
PmaCI CACGTG 1 cut(s) 476
PmlI CACGTG 1 cut(s) 476
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 476
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 717, 739, 776
PspCI CACGTG 1 cut(s) 476
PspGI CCWGG 3 cut(s) 717, 739, 776
PspN4I GGNNCC 2 cut(s) 612, 724
PspPI GGNCC 1 cut(s) 723
PsuI RGATCY 3 cut(s) 58, 253, 388
PvuI CGATCG 1 cut(s) 53
RgaI GCGATCGC 1 cut(s) 53
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 4 cut(s) 455, 522, 567, 784
SatI GCNGC 6 cut(s) 25, 42, 73, 135, 203, 213
Sau3AI GATC 8 cut(s) 50, 58, 126, 157, 253, 388, 694, 736
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 3 cut(s) 719, 741, 778
SduI GDGCHC 1 cut(s) 22
SfaAI GCGATCGC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 697
Sfr303I CCGCGG 1 cut(s) 25
SgfI GCGATCGC 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 517
SphI GCATGC 1 cut(s) 416
Sse9I AATT 6 cut(s) 170, 444, 452, 464, 494, 587
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 9 cut(s) 22, 24, 41, 72, 108, 135, 200, 212, 215
SspMI CTAG 2 cut(s) 518, 773
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 717, 739, 776
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 4 cut(s) 320, 363, 478, 677
TaqI TCGA 1 cut(s) 438
TaqII GACCGA 1 cut(s) 500
TasI AATT 6 cut(s) 170, 444, 452, 464, 494, 587
TauI GCSGC 5 cut(s) 27, 44, 75, 137, 215
TfiI GAWTC 2 cut(s) 270, 351
Tru1I TTAA 4 cut(s) 455, 522, 567, 784
Tru9I TTAA 4 cut(s) 455, 522, 567, 784
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 2 cut(s) 313, 370
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 2 cut(s) 313, 370
TspDTI ATGAA 2 cut(s) 477, 502
TspGWI ACGGA 3 cut(s) 180, 410, 707
TspRI CASTG 1 cut(s) 733
XapI RAATTY 1 cut(s) 444
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 2 cut(s) 518, 773
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.