FvH4_5g13370

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003016
Physical Location & Seq
Reverse (-)
7546492 .. 7550117
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13370.t2

Sequence Viewer

Length: 801 bp
ATGGAGATATGGAACAGAGCCCGCGGCGTCGCCGAGGAGGCCGCGAAGCGATCGCAGGATCTCACGATCGGCGGCGCGTCGAAGCTCTCCGACATCGTCTCCGACACCGCCAAGCGCTCCAGGGAGATCATCACCGCCGAGGCCTCCAAGCGAGCCGATCACATCAAGCAATTAGCCGCCGAAGCCTTTGCTCCATCGCTAGCGCAGCTACCTGCGGCGGAGAGTCAACGAGAAGAAGAGAAGGATCTGGAAGCGTTTGGAATCACCGAGGAGTTGAGAGACTTCGCTAACGGGATCACTTTGGTCACCTTCAAAGATTTTCCGATTCCAGATGATACGAAATTCTCTGACGTGCCAACAGTCACAAATGTTAGGCAGGATCTTACAGAGTGGCAAGAAAAGCATGCCCATCTTGTTCTTTTGAATGTCGAGGAAATCTCAAAATTAAGATACGAATTGTGTCCACGGGTTATGACAGAAAGGAAATTTTGGAGGATATATTTCATACTAGTTAACAATCATGTGGCACCCTATGAGAAGCGGTACCTGGATAATGGTAATCTAAAGTCAACTGAACAGTTTCCAGATGACAGAGTAAAGGAACCTGCTAAAGTTGAAATAACTTCTAAAGCAGAGGATAAGGAAGACAAAAATCACAGTAAAACTTCAACCTCATCAACTACAGAGCAAGACTTGGATGCATTTCTCCTGGGAGATAGTGATGATGATCCAGATGATGGTGATGGTAACATTGATGATGATTTTGACAAATTAGTGGACGGATTGGATGAAGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

267

Amino Acids

30.12

Weight (kDa)

4.61

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 129 - 175 3.3e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 613
Acc65I GGTACC 1 cut(s) 543
AccB1I GGYRCC 2 cut(s) 526, 543
AccB7I CCANNNNNTGG 1 cut(s) 737
AccII CGCG 3 cut(s) 24, 44, 77
AclWI GGATC 5 cut(s) 66, 252, 302, 387, 722
AcsI RAATTY 2 cut(s) 341, 485
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 545
AfeI AGCGCT 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 737
AgsI TTSAA 4 cut(s) 313, 424, 617, 669
AhlI ACTAGT 1 cut(s) 508
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 3 cut(s) 119, 546, 708
AluBI AGCT 2 cut(s) 85, 208
AluI AGCT 2 cut(s) 85, 208
Alw26I GTCTC 2 cut(s) 103, 273
AlwI GGATC 5 cut(s) 66, 252, 302, 387, 722
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 2 cut(s) 39, 141
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 2 cut(s) 341, 485
AsiSI GCGATCGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 579
Asp718I GGTACC 1 cut(s) 543
AspLEI GCGC 3 cut(s) 77, 117, 205
AsuHPI GGTGA 4 cut(s) 124, 256, 298, 752
AsuNHI GCTAGC 1 cut(s) 199
BanI GGYRCC 2 cut(s) 526, 543
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 217
BccI CCATC 4 cut(s) 202, 417, 731, 737
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 3 cut(s) 121, 548, 710
BcoDI GTCTC 2 cut(s) 103, 273
BcuI ACTAGT 1 cut(s) 508
BfaI CTAG 2 cut(s) 200, 509
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 2 cut(s) 220, 613
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 6 cut(s) 25, 42, 73, 177, 206, 216
BlsI GCNGC 6 cut(s) 26, 43, 74, 178, 207, 217
Bme1390I CCNGG 3 cut(s) 121, 548, 710
BmgBI CACGTC 1 cut(s) 352
BmiI GGNNCC 3 cut(s) 528, 545, 603
BmrFI CCNGG 3 cut(s) 121, 548, 710
BmsI GCATC 1 cut(s) 688
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 7 cut(s) 22, 33, 120, 138, 267, 464, 709
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 3 cut(s) 121, 548, 710
BseDI CCNNGG 7 cut(s) 22, 33, 120, 138, 267, 464, 709
BseGI GGATG 2 cut(s) 703, 793
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 1 cut(s) 737
BseRI GAGGAG 2 cut(s) 50, 284
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 3 cut(s) 24, 44, 77
Bsh1285I CGRYCG 2 cut(s) 53, 69
BshFI GGCC 2 cut(s) 41, 143
BshNI GGYRCC 2 cut(s) 526, 543
BsiEI CGRYCG 2 cut(s) 53, 69
BslI CCNNNNNNNGG 1 cut(s) 737
BsmAI GTCTC 2 cut(s) 103, 273
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 2 cut(s) 41, 143
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
BspANI GGCC 2 cut(s) 41, 143
BspFNI CGCG 3 cut(s) 24, 44, 77
BspLI GGNNCC 3 cut(s) 528, 545, 603
BspMI ACCTGC 2 cut(s) 220, 613
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 5 cut(s) 66, 252, 302, 387, 722
BspT107I GGYRCC 2 cut(s) 526, 543
BssECI CCNNGG 7 cut(s) 22, 33, 120, 138, 267, 464, 709
BssMI GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 121, 548, 710
Bst4CI ACNGT 3 cut(s) 361, 579, 659
Bst6I CTCTTC 2 cut(s) 231, 786
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 4 cut(s) 22, 153, 201, 405
BstDSI CCRYGG 2 cut(s) 22, 464
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 2 cut(s) 703, 793
BstFNI CGCG 3 cut(s) 24, 44, 77
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 3 cut(s) 77, 117, 205
BstKTI GATC 9 cut(s) 53, 61, 69, 129, 160, 247, 297, 382, 730
BstMAI GTCTC 2 cut(s) 103, 273
BstMBI GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
BstMCI CGRYCG 2 cut(s) 53, 69
BstMWI GCNNNNNNNGC 4 cut(s) 38, 182, 205, 400
BstNI CCWGG 3 cut(s) 121, 548, 710
BstNSI RCATGY 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 119, 546, 708
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 3 cut(s) 24, 44, 77
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 3 cut(s) 58, 244, 379
BstYI RGATCY 3 cut(s) 58, 244, 379
BsuRI GGCC 2 cut(s) 41, 143
BtgI CCRYGG 2 cut(s) 22, 464
BtgZI GCGATG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 2 cut(s) 703, 793
BveI ACCTGC 2 cut(s) 220, 613
Cac8I GCNNGC 4 cut(s) 22, 153, 201, 405
CfoI GCGC 3 cut(s) 77, 117, 205
Cfr42I CCGCGG 1 cut(s) 25
CseI GACGC 2 cut(s) 16, 66
Csp6I GTAC 1 cut(s) 544
CviAII CATG 2 cut(s) 404, 521
CviJI RGCY 8 cut(s) 20, 41, 85, 143, 155, 176, 185, 208
CviKI_1 RGCY 8 cut(s) 20, 41, 85, 143, 155, 176, 185, 208
CviQI GTAC 1 cut(s) 544
DpnI GATC 9 cut(s) 52, 60, 68, 128, 159, 246, 296, 381, 729
DpnII GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
Eam1104I CTCTTC 2 cut(s) 231, 786
EarI CTCTTC 2 cut(s) 231, 786
EciI GGCGGA 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
EcoRII CCWGG 3 cut(s) 119, 546, 708
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 407, 524
FaiI YATR 7 cut(s) 10, 405, 473, 499, 506, 522, 534
FatI CATG 2 cut(s) 403, 520
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 25, 42, 73, 177, 206, 216
FokI GGATG 1 cut(s) 710
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 25, 42, 73, 177, 206, 216
FspBI CTAG 2 cut(s) 200, 509
GlaI GCGC 3 cut(s) 76, 116, 204
GluI GCNGC 6 cut(s) 25, 42, 73, 177, 206, 216
GsuI CTGGAG 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 2 cut(s) 41, 143
HgaI GACGC 2 cut(s) 16, 66
HhaI GCGC 3 cut(s) 77, 117, 205
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 2 cut(s) 407, 524
Hin6I GCGC 3 cut(s) 75, 115, 203
HinP1I GCGC 3 cut(s) 75, 115, 203
HincII GTYRAC 3 cut(s) 227, 514, 570
HindII GTYRAC 3 cut(s) 227, 514, 570
HinfI GANTC 3 cut(s) 223, 261, 325
HpaI GTTAAC 1 cut(s) 514
HphI GGTGA 4 cut(s) 124, 256, 298, 752
Hpy166II GTNNAC 5 cut(s) 227, 464, 514, 570, 778
Hpy188I TCNGA 4 cut(s) 91, 103, 324, 349
Hpy188III TCNNGA 5 cut(s) 64, 248, 329, 584, 731
Hpy8I GTNNAC 5 cut(s) 227, 464, 514, 570, 778
Hpy99I CGWCG 2 cut(s) 32, 82
HpyAV CCTTC 2 cut(s) 235, 319
HpyCH4III ACNGT 3 cut(s) 361, 579, 659
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 182, 205, 400
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 2 cut(s) 407, 524
HspAI GCGC 3 cut(s) 75, 115, 203
KpnI GGTACC 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 514
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
LmnI GCTCC 2 cut(s) 122, 196
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 688
MaeI CTAG 2 cut(s) 200, 509
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 304, 361, 746
MalI GATC 9 cut(s) 52, 60, 68, 128, 159, 246, 296, 381, 729
MboI GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
MboII GAAGA 3 cut(s) 245, 248, 656
MflI RGATCY 3 cut(s) 58, 244, 379
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 6 cut(s) 170, 341, 443, 455, 485, 770
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 114, 126
MnlI CCTC 9 cut(s) 28, 31, 133, 154, 262, 424, 486, 628, 682
Mph1103I ATGCAT 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 2 cut(s) 446, 513
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 121, 548, 710
MvaI CCWGG 3 cut(s) 121, 548, 710
MvnI CGCG 3 cut(s) 24, 44, 77
MwoI GCNNNNNNNGC 4 cut(s) 38, 182, 205, 400
NdeII GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 407, 524
NlaIV GGNNCC 3 cut(s) 528, 545, 603
NmeAIII GCCGAG 2 cut(s) 58, 163
NmuCI GTSAC 2 cut(s) 304, 361
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 1 cut(s) 407
PaeI GCATGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 261, 325
PflFI GACNNNGTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 6 cut(s) 26, 43, 74, 178, 207, 217
Ple19I CGATCG 2 cut(s) 53, 69
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 119, 546, 708
PspEI GGTNACC 1 cut(s) 304
PspGI CCWGG 3 cut(s) 119, 546, 708
PspN4I GGNNCC 3 cut(s) 528, 545, 603
PsuI RGATCY 3 cut(s) 58, 244, 379
PsyI GACNNNGTC 1 cut(s) 95
PvuI CGATCG 2 cut(s) 53, 69
RgaI GCGATCGC 1 cut(s) 53
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 2 cut(s) 446, 513
SatI GCNGC 6 cut(s) 25, 42, 73, 177, 206, 216
Sau3AI GATC 9 cut(s) 50, 58, 66, 126, 157, 244, 294, 379, 727
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 3 cut(s) 121, 548, 710
SduI GDGCHC 1 cut(s) 22
SetI ASST 8 cut(s) 87, 210, 214, 311, 354, 549, 607, 674
SfaAI GCGATCGC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 688
SfcI CTRYAG 1 cut(s) 681
Sfr303I CCGCGG 1 cut(s) 25
SgfI GCGATCGC 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 508
SphI GCATGC 1 cut(s) 407
Sse9I AATT 6 cut(s) 170, 341, 443, 455, 485, 770
SseBI AGGCCT 1 cut(s) 143
SspMI CTAG 2 cut(s) 200, 509
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 119, 546, 708
TaaI ACNGT 3 cut(s) 361, 579, 659
TaiI ACGT 1 cut(s) 354
TaqI TCGA 2 cut(s) 80, 429
TasI AATT 6 cut(s) 170, 341, 443, 455, 485, 770
TauI GCSGC 5 cut(s) 27, 44, 75, 179, 218
TfiI GAWTC 2 cut(s) 261, 325
Tru1I TTAA 2 cut(s) 446, 513
Tru9I TTAA 2 cut(s) 446, 513
TseFI GTSAC 2 cut(s) 304, 361
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 2 cut(s) 304, 361
TspDTI ATGAA 1 cut(s) 493
TspGWI ACGGA 1 cut(s) 795
Tth111I GACNNNGTC 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 737
XapI RAATTY 2 cut(s) 341, 485
XceI RCATGY 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 2 cut(s) 200, 509
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.