Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Reverse (-)

3083951 .. 3085988

Gene Structure 2038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g04810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAAGACTTATGGAAGCGAGCGAAGACCTTCGCCGAAGAAGCGGCCAAGAAATCCCAAACCCTAACCACCTCCGCCAAGATCACCGACCTAGTTTCCGAAACCGCCAAGCGATCCCGTGAGTTCGCCGCCGAGGCGTCCAAGAAGGCCGACGAGATCAAGACGGCGGCGCTTAAGCAGGCCGATCAGATCAAGTCCCTCAATGTCTCCGAGATGATACCTCCCCAGCTCGCCTCGCTCTCGATCGTCAACTCCGCCTCCGCCTCGTCCGCCCCTGAGCCGCCGTCGCCGTTGGAGCTCAAGAAGTTTGGTGTCACCGACGATCTCAGAGATTTTGTCCAGGGACTCACTTCCGATACCTTCAAGCATTTTCCGGTCCAAGATGCGGCGGAGGAGGTCTCCGATGTGCCGACGACCGCATCGAATGTAAGGAAAGATCTGACGGAGTGGCAGGAGCGGCATGCAACTTTGGTGCTTACTACTGTCAAGGAAATTTCAAGGCTGAGGTATGAGTTGTGTCCGCGAGTTATGAAAGAAAGAAGATTCTGGAAGATATATTTTACCCTTGTGAGCAGTCATGTGGCTCCATATGAGAAGCAATACATGGAGGAATTGAAGGTCGAGGAAGCGGAGAAACTAAAAGATCATATTGTGAAGCCAACACCTCCTGTTGGAGGAACTGACAAAGCAGAAGGATCTGAAAAGAACACAAAGCCTTTAGTTTCGAAATCATCGTCAGCTGAACAGGACTTGGATAGTTTCCTTTTGGGTGATCTTGAAGACAGTGATGGGGGTCCGGATGATCGTGATGATGGTGATCGGAGCTTTGATGATGATTTTGACAAGATCGACAATTCGGATGTCGAAGATGAGAAGCACGAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

297

Amino Acids

33.13

Weight (kDa)

4.91

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	457
AccII	CGCG	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	796
AclWI	GGATC	2 cut(s)	108, 703
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	385, 671, 674
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	364, 498, 616, 779
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	4 cut(s)	229, 298, 740, 825
AluI	AGCT	4 cut(s)	229, 298, 740, 825
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	211, 403
AlwI	GGATC	2 cut(s)	108, 703
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	3 cut(s)	45, 147, 180
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	376, 794
AsuHPI	GGTGA	4 cut(s)	76, 307, 782, 827
AsuII	TTCGAA	1 cut(s)	725
AvaII	GGWCC	2 cut(s)	376, 794
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	878
BbsI	GAAGAC	3 cut(s)	12, 32, 786
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	782, 806
BceAI	ACGGC	3 cut(s)	180, 268, 274
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	2 cut(s)	211, 403
BfaI	CTAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 458
BlsI	GCNGC	6 cut(s)	46, 130, 169, 282, 388, 459
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	2 cut(s)	376, 794
BmgT120I	GGNCC	2 cut(s)	376, 794
BmiI	GGNNCC	2 cut(s)	585, 795
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	373, 428
BpiI	GAAGAC	3 cut(s)	12, 32, 786
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu10I	CCTNAGC	2 cut(s)	276, 503
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	816
BsaHI	GRCGYC	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	132, 340
BsaWI	WCCGGW	2 cut(s)	373, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 671, 674
Bse8I	GATNNNNATC	1 cut(s)	816
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	132, 340
BseGI	GGATG	2 cut(s)	805, 865
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	3 cut(s)	385, 671, 674
BseMII	CTCAG	3 cut(s)	267, 340, 494
BseRI	GAGGAG	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	523
Bsh1285I	CGRYCG	2 cut(s)	246, 417
BshFI	GGCC	3 cut(s)	47, 149, 182
BsiEI	CGRYCG	2 cut(s)	246, 417
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	374, 797
BslFI	GGGAC	2 cut(s)	181, 357
BslI	CCNNNNNNNGG	3 cut(s)	385, 671, 674
BsmAI	GTCTC	2 cut(s)	211, 403
BsmFI	GGGAC	2 cut(s)	181, 357
BsnI	GGCC	3 cut(s)	47, 149, 182
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	796
BspANI	GGCC	3 cut(s)	47, 149, 182
BspCNI	CTCAG	3 cut(s)	268, 339, 495
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	585, 795
BspPI	GGATC	2 cut(s)	108, 703
BspT104I	TTCGAA	1 cut(s)	725
BspTI	CTTAAG	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	132, 340
BssNI	GRCGYC	1 cut(s)	137
BssSI	CACGAG	1 cut(s)	878
Bst2BI	CACGAG	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	484, 785
BstACI	GRCGYC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	4 cut(s)	21, 180, 231, 462
BstDEI	CTNAG	3 cut(s)	276, 326, 503
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	805, 865
BstFNI	CGCG	1 cut(s)	523
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	211, 403
BstMCI	CGRYCG	2 cut(s)	246, 417
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 134, 235, 269, 286, 295, 457
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	523
BstV2I	GAAGAC	3 cut(s)	12, 32, 786
BstX2I	RGATCY	2 cut(s)	436, 695
BstYI	RGATCY	2 cut(s)	436, 695
BsuRI	GGCC	3 cut(s)	47, 149, 182
BtsCI	GGATG	2 cut(s)	805, 865
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	4 cut(s)	21, 180, 231, 462
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	376, 794
CseI	GACGC	1 cut(s)	126
CviAII	CATG	3 cut(s)	461, 578, 604
DdeI	CTNAG	3 cut(s)	276, 326, 503
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	5 cut(s)	64, 244, 250, 259, 404
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	376, 794
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	3 cut(s)	464, 581, 607
FaqI	GGGAC	2 cut(s)	181, 357
FatI	CATG	3 cut(s)	460, 577, 603
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 458
FokI	GGATG	2 cut(s)	812, 872
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 458
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 458
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	47, 149, 182
HapII	CCGG	2 cut(s)	374, 797
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	464, 581, 607
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	345, 543
HpaII	CCGG	2 cut(s)	374, 797
HphI	GGTGA	4 cut(s)	76, 307, 782, 827
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	7 cut(s)	160, 241, 301, 547, 776, 797, 806
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	4 cut(s)	155, 289, 323, 415
HpyAV	CCTTC	5 cut(s)	40, 139, 370, 610, 686
HpyCH4III	ACNGT	2 cut(s)	484, 785
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 134, 235, 269, 286, 295, 457
HpyF3I	CTNAG	3 cut(s)	276, 326, 503
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	464, 581, 607
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	796
LmnI	GCTCC	4 cut(s)	295, 454, 589, 822
LweI	GCATC	2 cut(s)	373, 428
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	313
MbiI	CCGCTC	1 cut(s)	457
MboII	GAAGA	7 cut(s)	17, 37, 50, 552, 562, 791, 878
MflI	RGATCY	2 cut(s)	436, 695
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	3 cut(s)	492, 611, 853
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	2 cut(s)	273, 652
MroI	TCCGGA	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	740
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	2 cut(s)	374, 797
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	7 cut(s)	41, 134, 235, 269, 286, 295, 457
NdeI	CATATG	1 cut(s)	589
NlaIII	CATG	3 cut(s)	464, 581, 607
NlaIV	GGNNCC	2 cut(s)	585, 795
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	419, 731
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	543
PkrI	GCNGC	6 cut(s)	46, 130, 169, 282, 388, 459
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	585, 795
PspPI	GGNCC	2 cut(s)	376, 794
PsuI	RGATCY	2 cut(s)	436, 695
PvuI	CGATCG	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	740
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	6 cut(s)	45, 129, 168, 281, 387, 458
Sau96I	GGNCC	2 cut(s)	376, 794
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	2 cut(s)	373, 428
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	2 cut(s)	376, 794
SmlI	CTYRAG	2 cut(s)	173, 299
SmoI	CTYRAG	2 cut(s)	173, 299
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	3 cut(s)	492, 611, 853
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	484, 785
TaqI	TCGA	6 cut(s)	242, 422, 621, 725, 849, 864
TasI	AATT	3 cut(s)	492, 611, 853
TauI	GCSGC	6 cut(s)	47, 131, 170, 283, 389, 460
TfiI	GAWTC	1 cut(s)	543
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	790
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	376, 794
XagI	CCTNNNNNAGG	1 cut(s)	672
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.