Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004339.1

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Reverse (-)

135921 .. 138110

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004339.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggaagacctgtggaagcgagccaagagcttcgcggaagaagccgccaagaaatcccagacaatcaccacctcctccgcctccgccaaaatctccgacttagtctccgagaccgccaagcgatcccgcgagttcgccgccgaggcctccaagaaagctgacgagatcaaatccgccgccctcaagcaagccgatcagatcaagtctctctccgtctccgagatcataccgcctcagctctccaacctctccctcgtcaactcctcctcctccgcctctgcctcggtcaatgagccttcgccggaggagcttcagaagtttggagtctccgacgatctcagagacttcgtcaagggactcacttccgataccttcaagcactttccgatccaagatgaagcggaggaggtttctgaggtgccgactacggcctcgaatgtgaggaaggatctgactgagtggcaggagcgccatgccactctggttctcactactgttaaggagatttcgaggttaagatatgaactgtgcccacgtgttatgaaagaacgaagattctggaggatatattttacccttgtgagcagtcatgtggctccatatgagaagcaatatatggaggagttgaagctcaaggaagcagagcaattggaagctgataaagcgaagcaaacacctgttgttggagaggctgataaagcagaaggaagtgaaacaaacaagaagagcttaacttccaaatcttcatcaactgagcaggacttggatacattccttttgggggatcttgaagacagcgatgggggtcaagatgatgggaacgacaattttgatgatgatttcgacaagattggcgattcggatgttgatgatgaaaagcatgtgaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

297

Amino Acids

33.14

Weight (kDa)

4.8

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccII	CGCG	2 cut(s)	35, 129
AclWI	GGATC	4 cut(s)	117, 382, 456, 792
AcuI	CTGAAG	1 cut(s)	296
AcvI	CACGTG	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	683, 781
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	376, 628, 791
AluBI	AGCT	7 cut(s)	30, 158, 238, 310, 631, 656, 729
AluI	AGCT	7 cut(s)	30, 158, 238, 310, 631, 656, 729
Alw26I	GTCTC	6 cut(s)	104, 109, 210, 220, 331, 336
AlwI	GGATC	4 cut(s)	117, 382, 456, 792
AoxI	GGCC	2 cut(s)	144, 429
AspLEI	GCGC	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	418
BbrPI	CACGTG	1 cut(s)	536
BbsI	GAAGAC	2 cut(s)	12, 798
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	794, 809
BceAI	ACGGC	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	760
BcoDI	GTCTC	6 cut(s)	104, 109, 210, 220, 331, 336
BfoI	RGCGCY	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	760
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	3 cut(s)	45, 138, 177
BlsI	GCNGC	3 cut(s)	46, 139, 178
BmiI	GGNNCC	2 cut(s)	420, 597
BpiI	GAAGAC	2 cut(s)	12, 798
BpmI	CTGGAG	1 cut(s)	580
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	167, 617
BsaAI	YACGTR	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	141, 282
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 251, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	683, 781
BseDI	CCNNGG	2 cut(s)	141, 282
BseGI	GGATG	1 cut(s)	868
BseLI	CCNNNNNNNGG	2 cut(s)	683, 781
BseMII	CTCAG	5 cut(s)	248, 352, 405, 447, 744
BseRI	GAGGAG	7 cut(s)	64, 253, 256, 259, 320, 419, 635
BseSI	GKGCMC	1 cut(s)	533
Bsh1236I	CGCG	2 cut(s)	35, 129
BshFI	GGCC	2 cut(s)	146, 431
BshNI	GGYRCC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	683, 781
BsmAI	GTCTC	6 cut(s)	104, 109, 210, 220, 331, 336
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	146, 431
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
BspANI	GGCC	2 cut(s)	146, 431
BspCNI	CTCAG	5 cut(s)	247, 351, 406, 448, 745
BspFNI	CGCG	2 cut(s)	35, 129
BspLI	GGNNCC	2 cut(s)	420, 597
BspPI	GGATC	4 cut(s)	117, 382, 456, 792
BspQI	GCTCTTC	1 cut(s)	719
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	141, 282
BssMI	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
Bst4CI	ACNGT	2 cut(s)	496, 528
Bst6I	CTCTTC	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	21, 189
BstDEI	CTNAG	6 cut(s)	100, 234, 338, 414, 456, 753
BstF5I	GGATG	1 cut(s)	868
BstFNI	CGCG	2 cut(s)	35, 129
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	9 cut(s)	125, 168, 196, 201, 225, 337, 390, 451, 787
BstMAI	GTCTC	6 cut(s)	104, 109, 210, 220, 331, 336
BstMBI	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 143, 307, 662, 698
BstNSI	RCATGY	1 cut(s)	884
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	2 cut(s)	35, 129
BstV2I	GAAGAC	2 cut(s)	12, 798
BstX2I	RGATCY	2 cut(s)	448, 784
BstYI	RGATCY	2 cut(s)	448, 784
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	146, 431
BtgZI	GCGATG	1 cut(s)	813
BtsCI	GGATG	1 cut(s)	868
Cac8I	GCNNGC	2 cut(s)	21, 189
CfoI	GCGC	1 cut(s)	471
CviAII	CATG	3 cut(s)	473, 590, 881
DdeI	CTNAG	6 cut(s)	100, 234, 338, 414, 456, 753
DpnI	GATC	9 cut(s)	124, 167, 195, 200, 224, 336, 389, 450, 786
DpnII	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
EciI	GGCGGA	4 cut(s)	67, 73, 163, 262
Eco147I	AGGCCT	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	296
Eco72I	CACGTG	1 cut(s)	536
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	3 cut(s)	476, 593, 884
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	472, 589, 880
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	45, 138, 177
FokI	GGATG	1 cut(s)	875
Fsp4HI	GCNGC	3 cut(s)	45, 138, 177
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	3 cut(s)	45, 138, 177
GsuI	CTGGAG	1 cut(s)	580
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	2 cut(s)	146, 431
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	3 cut(s)	476, 593, 884
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	324, 357, 555, 857
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	559, 788, 809
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	4 cut(s)	306, 382, 439, 698
HpyCH4III	ACNGT	2 cut(s)	496, 528
HpyCH4IV	ACGT	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 143, 307, 662, 698
HpyF3I	CTNAG	6 cut(s)	100, 234, 338, 414, 456, 753
HpySE526I	ACGT	1 cut(s)	535
Hsp92II	CATG	3 cut(s)	476, 593, 884
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	3 cut(s)	307, 466, 601
LpnPI	CCDG	8 cut(s)	23, 71, 315, 449, 467, 544, 690, 743
MaeII	ACGT	1 cut(s)	535
MalI	GATC	9 cut(s)	124, 167, 195, 200, 224, 336, 389, 450, 786
MboI	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
MboII	GAAGA	6 cut(s)	17, 50, 564, 735, 736, 803
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	2 cut(s)	448, 784
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	2 cut(s)	647, 826
MlyI	GAGTC	2 cut(s)	333, 351
MmeI	TCCRAC	4 cut(s)	120, 267, 354, 664
MseI	TTAA	3 cut(s)	498, 515, 731
MspI	CCGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	647
MvnI	CGCG	2 cut(s)	35, 129
MwoI	GCNNNNNNNGC	5 cut(s)	41, 143, 307, 662, 698
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
NlaIII	CATG	3 cut(s)	476, 593, 884
NlaIV	GGNNCC	2 cut(s)	420, 597
NmeAIII	GCCGAG	1 cut(s)	166
NspI	RCATGY	1 cut(s)	884
PceI	AGGCCT	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	555, 857
PflFI	GACNNNGTC	2 cut(s)	101, 347
PkrI	GCNGC	3 cut(s)	46, 139, 178
PleI	GAGTC	2 cut(s)	332, 351
PmaCI	CACGTG	1 cut(s)	536
PmlI	CACGTG	1 cut(s)	536
PpsI	GAGTC	2 cut(s)	332, 351
Ppu21I	YACGTR	1 cut(s)	536
PspCI	CACGTG	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	420, 597
PsuI	RGATCY	2 cut(s)	448, 784
PsyI	GACNNNGTC	2 cut(s)	101, 347
SapI	GCTCTTC	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	498, 515, 731
SatI	GCNGC	3 cut(s)	45, 138, 177
Sau3AI	GATC	9 cut(s)	122, 165, 193, 198, 222, 334, 387, 448, 784
SchI	GAGTC	2 cut(s)	333, 351
SduI	GDGCHC	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	182, 632
SmoI	CTYRAG	2 cut(s)	182, 632
Sse9I	AATT	2 cut(s)	647, 826
SseBI	AGGCCT	1 cut(s)	146
StuI	AGGCCT	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	496, 528
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	434, 509, 843
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	2 cut(s)	647, 826
TauI	GCSGC	3 cut(s)	47, 140, 179
TfiI	GAWTC	2 cut(s)	555, 857
Tru1I	TTAA	3 cut(s)	498, 515, 731
Tru9I	TTAA	3 cut(s)	498, 515, 731
TspDTI	ATGAA	5 cut(s)	411, 537, 557, 735, 888
TspGWI	ACGGA	1 cut(s)	202
Tth111I	GACNNNGTC	2 cut(s)	101, 347
XceI	RCATGY	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.