Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Reverse (-)

3366788 .. 3369207

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05030.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGAAGACTTGTGGAAGCGAGCCAAGACCTTCGCCGAAGAAGCGGCCAAGAAGTCCCAAACCCTAACCACCTCCGCCAAGATCACCGACCTAGTCTCCGAAACCGCCAAGCGATCCCGCGAGTTCGCCGCCGAGGCGTCCAAGAAGGCCGACGAGATCAAGACGGCCGCGCTCAAGCAGGCCGATCAGATCAAGTCCCTCTCCGTCTCCGAGATCATTCCTCCCCAGCTCGCCTCGCTCTCGATCGTCAACTCCGCCTCCGCGTCCTCCGCCCCTGAGCCGCCCTCGCCGTCGGAGCTCAGGAAGTTCGGTGTCACCGACGATCTCAGAGATTTTGTCAAGGGACTCACTTCCGACACCTTCAAGCATTTTCCGGTCCAAGATGCGGCGGAGGAGGTCTCCGATGTGCCGACCACGACCTCGAATGTGAGGAAAGATCTGACGGAGTGGCAGGAGCGACATGCAACTTTGGTGCTCACTACTGTTAAGGAAATTTCAAGGCTGAGATATGAATTATGCCCGCGTGTTATGAAAGAAAGAATATTCTGGAAGATATATTTTACCCTTGTGAGCAGTCATGTGGCGCCATGTGAGAAGCAATACATGGAGGAATTGAAAGTCAAGGAAGCAGAGAAACTAAAAGATGATATTGTGAAGCCAACACCTGTGGTTGGAGTGACTGACAAAGCAGAAGGATCTGAAAAGAACACAAAGCCTTTAGTTTCGAAATCATCGTCAACTGAGCAGGACTTGGATAGTTTTCTTTTGGGTGATCTTGAAGACAGTGATGGGGCTCCAGATGATCGTGATGATGGTGATGGGAGCTTTGATGATGATTTTGACAAGATTGGCAATTCGGATGTTGAAGATGAGAAGCACGCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

297

Amino Acids

32.86

Weight (kDa)

4.94

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AccII	CGCG	4 cut(s)	120, 170, 263, 523
AclWI	GGATC	2 cut(s)	108, 703
AcoI	YGGCCR	2 cut(s)	45, 165
AcsI	RAATTY	1 cut(s)	492
AcyI	GRCGYC	2 cut(s)	137, 584
AfiI	CCNNNNNNNGG	2 cut(s)	385, 671
AgsI	TTSAA	5 cut(s)	364, 498, 616, 779, 866
AluBI	AGCT	3 cut(s)	229, 298, 825
AluI	AGCT	3 cut(s)	229, 298, 825
Alw21I	GWGCWC	2 cut(s)	300, 477
Alw26I	GTCTC	3 cut(s)	100, 211, 403
AlwI	GGATC	2 cut(s)	108, 703
AoxI	GGCC	4 cut(s)	45, 147, 165, 180
ApoI	RAATTY	1 cut(s)	492
ArsI	GACNNNNNNTTYG	2 cut(s)	719, 751
AspLEI	GCGC	2 cut(s)	172, 586
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	4 cut(s)	76, 307, 782, 827
AsuII	TTCGAA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	300, 796
BbsI	GAAGAC	2 cut(s)	12, 786
Bbv12I	GWGCWC	2 cut(s)	300, 477
BccI	CCATC	3 cut(s)	782, 806, 812
BceAI	ACGGC	2 cut(s)	180, 274
BcoDI	GTCTC	3 cut(s)	100, 211, 403
BfaI	CTAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	587
BglI	GCCNNNNNGGC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	5 cut(s)	45, 129, 168, 281, 387
BlsI	GCNGC	5 cut(s)	46, 130, 169, 282, 388
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	585, 795
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	12, 786
BplI	GAGNNNNNCTC	4 cut(s)	269, 301, 383, 415
BpmI	CTGGAG	1 cut(s)	780
Bpu10I	CCTNAGC	2 cut(s)	276, 299
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	137, 584
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 671
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	2 cut(s)	385, 671
BseMII	CTCAG	5 cut(s)	267, 313, 340, 494, 732
BseRI	GAGGAG	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	4 cut(s)	120, 170, 263, 523
Bsh1285I	CGRYCG	2 cut(s)	168, 246
BshFI	GGCC	4 cut(s)	47, 149, 167, 182
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	2 cut(s)	168, 246
BsiHKAI	GWGCWC	2 cut(s)	300, 477
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	3 cut(s)	40, 181, 357
BslI	CCNNNNNNNGG	2 cut(s)	385, 671
BsmAI	GTCTC	3 cut(s)	100, 211, 403
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	3 cut(s)	40, 181, 357
BsnI	GGCC	4 cut(s)	47, 149, 167, 182
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	300, 477, 796
BspANI	GGCC	4 cut(s)	47, 149, 167, 182
BspCNI	CTCAG	5 cut(s)	268, 312, 339, 495, 733
BspFNI	CGCG	4 cut(s)	120, 170, 263, 523
BspLI	GGNNCC	2 cut(s)	585, 795
BspPI	GGATC	2 cut(s)	108, 703
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	137, 584
Bst4CI	ACNGT	2 cut(s)	484, 785
BstACI	GRCGYC	2 cut(s)	137, 584
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	5 cut(s)	21, 180, 231, 521, 879
BstDEI	CTNAG	5 cut(s)	276, 299, 326, 503, 741
BstF5I	GGATG	1 cut(s)	865
BstFNI	CGCG	4 cut(s)	120, 170, 263, 523
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	172, 586
BstMAI	GTCTC	3 cut(s)	100, 211, 403
BstMCI	CGRYCG	2 cut(s)	168, 246
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 134, 235, 269, 286, 295
BstNSI	RCATGY	1 cut(s)	464
BstUI	CGCG	4 cut(s)	120, 170, 263, 523
BstV2I	GAAGAC	2 cut(s)	12, 786
BstX2I	RGATCY	2 cut(s)	436, 695
BstYI	RGATCY	2 cut(s)	436, 695
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	47, 149, 167, 182
BtsCI	GGATG	1 cut(s)	865
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	5 cut(s)	21, 180, 231, 521, 879
CfoI	GCGC	2 cut(s)	172, 586
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	2 cut(s)	126, 252
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CviAII	CATG	4 cut(s)	461, 578, 588, 604
DdeI	CTNAG	5 cut(s)	276, 299, 326, 503, 741
DinI	GGCGCC	1 cut(s)	585
EaeI	YGGCCR	2 cut(s)	45, 165
EagI	CGGCCG	1 cut(s)	165
EciI	GGCGGA	4 cut(s)	64, 244, 259, 404
Ecl136II	GAGCTC	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	300, 796
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoT38I	GRGCYC	2 cut(s)	300, 796
EgeI	GGCGCC	1 cut(s)	585
EheI	GGCGCC	1 cut(s)	585
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	464, 581, 591, 607
FaiI	YATR	8 cut(s)	462, 510, 517, 530, 556, 579, 589, 605
FaqI	GGGAC	3 cut(s)	40, 181, 357
FatI	CATG	4 cut(s)	460, 577, 587, 603
FauI	CCCGC	2 cut(s)	125, 528
Fnu4HI	GCNGC	5 cut(s)	45, 129, 168, 281, 387
FokI	GGATG	1 cut(s)	872
FriOI	GRGCYC	2 cut(s)	300, 796
Fsp4HI	GCNGC	5 cut(s)	45, 129, 168, 281, 387
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	171, 585
GluI	GCNGC	5 cut(s)	45, 129, 168, 281, 387
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	780
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	4 cut(s)	47, 149, 167, 182
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	2 cut(s)	126, 252
HhaI	GCGC	2 cut(s)	172, 586
Hin1I	GRCGYC	2 cut(s)	137, 584
Hin1II	CATG	4 cut(s)	464, 581, 591, 607
Hin6I	GCGC	2 cut(s)	170, 584
HinP1I	GCGC	2 cut(s)	170, 584
HincII	GTYRAC	2 cut(s)	250, 738
HindII	GTYRAC	2 cut(s)	250, 738
HinfI	GANTC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	4 cut(s)	76, 307, 782, 827
Hpy166II	GTNNAC	2 cut(s)	250, 738
Hpy188III	TCNNGA	7 cut(s)	160, 241, 301, 547, 776, 797, 806
Hpy8I	GTNNAC	2 cut(s)	250, 738
Hpy99I	CGWCG	3 cut(s)	155, 295, 323
HpyAV	CCTTC	4 cut(s)	40, 139, 370, 686
HpyCH4III	ACNGT	2 cut(s)	484, 785
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 134, 235, 269, 286, 295
HpyF3I	CTNAG	5 cut(s)	276, 299, 326, 503, 741
Hsp92I	GRCGYC	2 cut(s)	137, 584
Hsp92II	CATG	4 cut(s)	464, 581, 591, 607
HspAI	GCGC	2 cut(s)	170, 584
KasI	GGCGCC	1 cut(s)	583
LmnI	GCTCC	4 cut(s)	295, 454, 799, 822
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	313, 676
MboII	GAAGA	5 cut(s)	17, 50, 562, 791, 878
MflI	RGATCY	2 cut(s)	436, 695
MhlI	GDGCHC	3 cut(s)	300, 477, 796
MluCI	AATT	4 cut(s)	492, 512, 611, 853
Mly113I	GGCGCC	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	3 cut(s)	273, 378, 652
MseI	TTAA	1 cut(s)	486
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	4 cut(s)	120, 170, 263, 523
MwoI	GCNNNNNNNGC	6 cut(s)	41, 134, 235, 269, 286, 295
NarI	GGCGCC	1 cut(s)	584
NlaIII	CATG	4 cut(s)	464, 581, 591, 607
NlaIV	GGNNCC	2 cut(s)	585, 795
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	313, 676
NspI	RCATGY	1 cut(s)	464
NspV	TTCGAA	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 731
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	46, 130, 169, 282, 388
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	339
PluTI	GGCGCC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	585, 795
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	436, 695
PsyI	GACNNNGTC	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	5 cut(s)	45, 129, 168, 281, 387
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	339
SduI	GDGCHC	3 cut(s)	300, 477, 796
SfaNI	GCATC	1 cut(s)	373
SfoI	GGCGCC	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	4 cut(s)	492, 512, 611, 853
SspDI	GGCGCC	1 cut(s)	583
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	484, 785
TaqI	TCGA	3 cut(s)	242, 422, 725
TasI	AATT	4 cut(s)	492, 512, 611, 853
TauI	GCSGC	5 cut(s)	47, 131, 170, 283, 389
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	2 cut(s)	313, 676
Tsp45I	GTSAC	2 cut(s)	313, 676
TspDTI	ATGAA	2 cut(s)	525, 545
TspGWI	ACGGA	2 cut(s)	193, 458
TspRI	CASTG	1 cut(s)	790
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.