AT1G26300

BEST Arabidopsis thaliana protein match is BSD domain-containing protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003016
Physical Location & Seq
Reverse (-)
9095768 .. 9099766
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26300.2

Sequence Viewer

Length: 951 bp
ATGGAGGATCTATGGAAGAGGGCAAAATCGTTCGCAGAAGAAGCGGGTAAGAAGTCTCAGACGATAACACAATCATCCTCCGCGACCTTCGTCAATCTCGTCACCGAGACTGCTAAGAAATCCAAGGAACTCGCTCTCGAAGCTTCGAAGAAAGCTGATCAATTCAATGCCGCCGATTTCGTTGCTGAAACGGCTAAGAAATCCAAAGAATTCGCTGCTGAAGCTTCAAAGAAGGCGGATCAGTTCAAAGTCGCCGCGCTGAAACAAGCTGATCAGATCCAGAACATCAAATCGATCGCTGATATAATCGGGACCGGGACCGGGTCAGGATCCGGTTCAGAAGCGGAGCTTCTCGAATTCGGTGTAACGGATGATTTGAGAGAGTTCGCTGAAGGCTTGACCTCTGCTACATTCCAAGCTTTTCCTGATCAAGATCAAGGGGATGAAGTTTCCGATGTGATAACAAATGCTTCGAATGTTCGAAAGGATCTCTCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTCAAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCTCGTTTCATGAAAGAAAGGAGGTTCTGGAGGATTTATTTCACACTAGTGAGCACTCATGTTTCTCCATATGAGAGGAAGTACATGGAGGAACTTAAGACCAAAGGAGAGCATGGAAATGAAGAAGCTAAGAAGGCTCCAGCGACTGGAGAGACAGAAACAGTAGAAAAGAATGTTGCAATCCGTAGAACATCTACTGCGTCTTCTGAGCAGGATCTGGATACATTCCTGTTGGGTGATCTAGAAGACAGTGATGAAGCTCCAGATGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGACGAGAAGCAATCATCTAAAGCTACAACAAATGCAGGAAACGAAGTGTCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

316

Amino Acids

34.82

Weight (kDa)

4.74

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 163 - 210 1.8e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 716, 839
AccII CGCG 2 cut(s) 83, 257
AciI CCGC 6 cut(s) 44, 81, 171, 236, 255, 344
AclWI GGATC 7 cut(s) 15, 246, 271, 324, 337, 495, 792
AcsI RAATTY 2 cut(s) 209, 356
AcuI CTGAAG 2 cut(s) 240, 411
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 3 cut(s) 321, 716, 839
AflII CTTAAG 1 cut(s) 665
AgsI TTSAA 4 cut(s) 166, 228, 247, 893
AhlI ACTAGT 1 cut(s) 616
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 9 cut(s) 143, 155, 224, 269, 349, 419, 698, 830, 917
AluI AGCT 9 cut(s) 143, 155, 224, 269, 349, 419, 698, 830, 917
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 4 cut(s) 60, 101, 502, 716
AlwI GGATC 7 cut(s) 15, 246, 271, 324, 337, 495, 792
AlwNI CAGNNNCTG 2 cut(s) 716, 787
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 209, 356
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 312, 318
AsuC2I CCSGG 2 cut(s) 316, 322
AsuHPI GGTGA 3 cut(s) 94, 818, 854
AsuII TTCGAA 3 cut(s) 146, 473, 481
AvaII GGWCC 2 cut(s) 312, 318
BamHI GGATCC 1 cut(s) 329
BbsI GAAGAC 3 cut(s) 765, 822, 900
Bbv12I GWGCWC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 202
BccI CCATC 2 cut(s) 833, 839
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciVI GTATCC 1 cut(s) 784
BclI TGATCA 3 cut(s) 157, 271, 427
BcnI CCSGG 2 cut(s) 316, 322
BcoDI GTCTC 4 cut(s) 60, 101, 502, 716
BcuI ACTAGT 1 cut(s) 616
BfaI CTAG 2 cut(s) 617, 812
BfrI CTTAAG 1 cut(s) 665
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 3 cut(s) 171, 216, 255
BlsI GCNGC 3 cut(s) 172, 217, 256
Bme1390I CCNGG 2 cut(s) 316, 322
Bme18I GGWCC 2 cut(s) 312, 318
BmgT120I GGNCC 2 cut(s) 312, 318
BmiI GGNNCC 4 cut(s) 313, 319, 331, 708
BmrFI CCNGG 2 cut(s) 316, 322
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 3 cut(s) 765, 822, 900
BpmI CTGGAG 4 cut(s) 619, 693, 738, 816
Bpu14I TTCGAA 3 cut(s) 146, 473, 481
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 2 cut(s) 316, 322
Bsa29I ATCGAT 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 716, 839
Bse1I ACTGG 1 cut(s) 721
Bse8I GATNNNNATC 1 cut(s) 432
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 4 cut(s) 74, 376, 448, 865
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 321, 716, 839
BseMII CTCAG 3 cut(s) 71, 768, 897
BseNI ACTGG 1 cut(s) 721
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 2 cut(s) 83, 257
Bsh1285I CGRYCG 1 cut(s) 297
BshVI ATCGAT 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 626
BsiSI CCGG 3 cut(s) 315, 321, 333
BslFI GGGAC 2 cut(s) 325, 331
BslI CCNNNNNNNGG 3 cut(s) 321, 716, 839
BsmAI GTCTC 4 cut(s) 60, 101, 502, 716
BsmFI GGGAC 2 cut(s) 325, 331
Bsp119I TTCGAA 3 cut(s) 146, 473, 481
Bsp1286I GDGCHC 1 cut(s) 626
BspACI CCGC 6 cut(s) 44, 81, 171, 236, 255, 344
BspCNI CTCAG 3 cut(s) 70, 769, 896
BspDI ATCGAT 1 cut(s) 293
BspFNI CGCG 2 cut(s) 83, 257
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 4 cut(s) 313, 319, 331, 708
BspPI GGATC 7 cut(s) 15, 246, 271, 324, 337, 495, 792
BspT104I TTCGAA 3 cut(s) 146, 473, 481
BspTI CTTAAG 1 cut(s) 665
BsrI ACTGG 1 cut(s) 721
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 733, 821
Bst6I CTCTTC 1 cut(s) 11
BstAFI CTTAAG 1 cut(s) 665
BstBI TTCGAA 3 cut(s) 146, 473, 481
BstDEI CTNAG 6 cut(s) 57, 114, 195, 699, 777, 883
BstF5I GGATG 4 cut(s) 74, 376, 448, 865
BstFNI CGCG 2 cut(s) 83, 257
BstHHI GCGC 1 cut(s) 259
BstMAI GTCTC 4 cut(s) 60, 101, 502, 716
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 5 cut(s) 41, 140, 191, 221, 704
BstNSI RCATGY 1 cut(s) 515
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 314, 320
BstUI CGCG 2 cut(s) 83, 257
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 3 cut(s) 765, 822, 900
BstX2I RGATCY 5 cut(s) 7, 276, 329, 487, 784
BstYI RGATCY 5 cut(s) 7, 276, 329, 487, 784
Bsu15I ATCGAT 1 cut(s) 293
BsuI GTATCC 1 cut(s) 784
BsuTUI ATCGAT 1 cut(s) 293
BtsCI GGATG 4 cut(s) 74, 376, 448, 865
BtsIMutI CAGTG 1 cut(s) 826
CaiI CAGNNNCTG 2 cut(s) 716, 787
CciI TCATGA 1 cut(s) 579
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 312, 318
ClaI ATCGAT 1 cut(s) 293
CseI GACGC 1 cut(s) 759
Csp6I GTAC 1 cut(s) 652
CviAII CATG 5 cut(s) 512, 580, 629, 655, 683
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 6 cut(s) 57, 114, 195, 699, 777, 883
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 312, 318
Eco57I CTGAAG 2 cut(s) 240, 411
EcoRI GAATTC 2 cut(s) 209, 356
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 5 cut(s) 515, 583, 632, 658, 686
FaiI YATR 9 cut(s) 13, 305, 513, 581, 630, 640, 642, 656, 684
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 325, 331
FatI CATG 5 cut(s) 511, 579, 628, 654, 682
FauI CCCGC 1 cut(s) 37
FauNDI CATATG 1 cut(s) 640
FbaI TGATCA 3 cut(s) 157, 271, 427
Fnu4HI GCNGC 3 cut(s) 171, 216, 255
FokI GGATG 4 cut(s) 61, 383, 455, 872
Fsp4HI GCNGC 3 cut(s) 171, 216, 255
FspBI CTAG 2 cut(s) 617, 812
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 171, 216, 255
GsuI CTGGAG 4 cut(s) 619, 693, 738, 816
HapII CCGG 3 cut(s) 315, 321, 333
HgaI GACGC 1 cut(s) 759
HhaI GCGC 1 cut(s) 259
Hin1II CATG 5 cut(s) 515, 583, 632, 658, 686
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 3 cut(s) 141, 222, 417
HpaII CCGG 3 cut(s) 315, 321, 333
HphI GGTGA 3 cut(s) 94, 818, 854
Hpy188I TCNGA 7 cut(s) 60, 276, 340, 454, 496, 778, 886
HpyAV CCTTC 4 cut(s) 97, 226, 386, 697
HpyCH4III ACNGT 2 cut(s) 733, 821
HpyCH4V TGCA 2 cut(s) 749, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 140, 191, 221, 704
HpyF3I CTNAG 6 cut(s) 57, 114, 195, 699, 777, 883
Hsp92II CATG 5 cut(s) 515, 583, 632, 658, 686
HspAI GCGC 1 cut(s) 257
Ksp22I TGATCA 3 cut(s) 157, 271, 427
LmnI GCTCC 3 cut(s) 346, 712, 835
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 2 cut(s) 617, 812
MaeIII GTNAC 2 cut(s) 100, 364
MboII GAAGA 7 cut(s) 28, 50, 160, 704, 765, 827, 905
MflI RGATCY 5 cut(s) 7, 276, 329, 487, 784
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 3 cut(s) 161, 209, 356
MseI TTAA 2 cut(s) 554, 666
MslI CAYNNNNRTG 2 cut(s) 617, 687
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 3 cut(s) 315, 321, 333
MspR9I CCNGG 2 cut(s) 316, 322
MvnI CGCG 2 cut(s) 83, 257
MwoI GCNNNNNNNGC 5 cut(s) 41, 140, 191, 221, 704
NciI CCSGG 2 cut(s) 316, 322
NdeI CATATG 1 cut(s) 640
NlaIII CATG 5 cut(s) 515, 583, 632, 658, 686
NlaIV GGNNCC 4 cut(s) 313, 319, 331, 708
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 515
NspV TTCGAA 3 cut(s) 146, 473, 481
OliI CACNNNNGTG 1 cut(s) 617
PagI TCATGA 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PflFI GACNNNGTC 1 cut(s) 322
PflMI CCANNNNNTGG 2 cut(s) 716, 839
PkrI GCNGC 3 cut(s) 172, 217, 256
Ple19I CGATCG 1 cut(s) 297
PshAI GACNNNNGTC 1 cut(s) 89
PspN4I GGNNCC 4 cut(s) 313, 319, 331, 708
PspPI GGNCC 2 cut(s) 312, 318
PstNI CAGNNNCTG 2 cut(s) 716, 787
PsuI RGATCY 5 cut(s) 7, 276, 329, 487, 784
PsyI GACNNNGTC 1 cut(s) 322
PvuI CGATCG 1 cut(s) 297
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 2 cut(s) 617, 687
SaqAI TTAA 2 cut(s) 554, 666
SatI GCNGC 3 cut(s) 171, 216, 255
Sau96I GGNCC 2 cut(s) 312, 318
ScrFI CCNGG 2 cut(s) 316, 322
SduI GDGCHC 1 cut(s) 626
SfuI TTCGAA 3 cut(s) 146, 473, 481
SinI GGWCC 2 cut(s) 312, 318
SmiMI CAYNNNNRTG 2 cut(s) 617, 687
SmlI CTYRAG 2 cut(s) 665, 854
SmoI CTYRAG 2 cut(s) 665, 854
SpeI ACTAGT 1 cut(s) 616
Sse9I AATT 3 cut(s) 161, 209, 356
SsiI CCGC 6 cut(s) 44, 81, 171, 236, 255, 344
SspMI CTAG 2 cut(s) 617, 812
StyD4I CCNGG 2 cut(s) 314, 320
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 2 cut(s) 733, 821
TaqI TCGA 6 cut(s) 138, 146, 293, 354, 473, 481
TasI AATT 3 cut(s) 161, 209, 356
TatI WGTACW 1 cut(s) 651
TauI GCSGC 2 cut(s) 173, 257
Tru1I TTAA 2 cut(s) 554, 666
Tru9I TTAA 2 cut(s) 554, 666
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 5 cut(s) 459, 568, 596, 705, 840
TspGWI ACGGA 2 cut(s) 383, 743
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 322
Van91I CCANNNNNTGG 2 cut(s) 716, 839
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 312, 318
XapI RAATTY 2 cut(s) 209, 356
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 1 cut(s) 515
XspI CTAG 2 cut(s) 617, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.