Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003016

Physical Location & Seq

Genomic Coordinates Forward (+)

29124844 .. 29127937

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G293800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAAGATTTATGGAAGCGAGCGAAGAGTTTCGCTGAAGAAGCGGCCAAGAAATCTCAAACCCTAACCAACTCCGCCAAAATCACCGACCTAGTCTCCGAAACCGCCAAGCGATCCCGCGAGTTCGCGGCGGAGGCGTCGAAGAAAGCCGACGAGATCAAAACGGCGGCGCTTAAGCAAGCCGATCAGATCAAGTCCCTCTCCGTCTCGGAGATCATCCCCCCTCAGCTATCCTCGCTCTCGATCGTCAATTCCGCCTCTGCCTCTGCCGTTGAGCCGCCGTCCCCGTCTGAACTCAAGAAGTTCGGAATCACCGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGATACCTTCAAGCATTTTCCGATCCAAGATGCAGCGGAGGAAGTCTCCGAGGTGCCGACTACGGCCTCGAATGTGAGGAAAGATCTGACGGAGTGGCAAGAGAAGCATGCAACTTTCGTTCTCACTACTGTTAAGGAAATTTCGAGGTTGAGATATGAATTATGCCCACGTGTTATGAAAGAAAGAAGATTTTGGAAGATATATTTTACCCTTGTGAGCAGTCATGTAGCTCCATATGAGAAGCAATACATGGAGGAGATGAAGGTCAAGGAAACAGAGCAATTAAAAGATGATACTGTGAAGCCAACACCTGTAGTTGGAGGGACTGACCAAGCAGAAGGATCAGAAAAGAAGAAGTTAGCTTCCAAGTCATCATCAGCTGAGCAGGACTTGGATAGTTTCCTCTTGGGTGATCTTGAAGATAGTGATGGGGGTCCAGATGATGCTGATGGCGATGGTAGCTTTGATGATGATTTTGACAAGATTGAAAATTCGGATGTTGAAGATGAGAAGCATGCGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

293

Amino Acids

32.49

Weight (kDa)

4.9

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26300 AT1G26300 AT1G26300 AT1G69030
fragaria_vesca	FvH4_4g29270 FvH4_4g29270 FvH4_4g29270 FvH4_5g13370 FvH4_5g13370
malus_domestica	MD13G1056300.v1.1 MD16G1055200.v1.1
prunus_persica	Prupe.1G293800_v2.0.a1
pyrus_communis	pycom13g05030 pycom16g04810
rosa_chinensis	RchiOBHm_Chr4g0437321 RchiOBHm_Chr7g0183761
rosa_laevigata	RLG00000005025 RLG00000006446
rosa_multiflora	Rmu_co8013130.1_g000001 Rmu_sc0002806.1_g000015 Rmu_sc0003610.1_g000035 Rmu_sc0004339.1_g000035
rosa_roxburghii	Rroxscaffold_3G00270230 Rroxscaffold_5G00378470
rosa_rugosa	Rorug06G0460000 Rorug06G0460100 Rorug06G0460100 Rorug06G0460100
rosa_samantha	Rh4AG354700 Rh4BG364600 Rh4CG378700 Rh4DG358400 Rh7AG060800 Rh7BG060900 Rh7CG062500 Rh7DG060900
rosa_wichuraiana	Rw4G031090 Rw7G005050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	403
AccII	CGCG	2 cut(s)	120, 128
AclWI	GGATC	3 cut(s)	108, 367, 700
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	489, 841
AcuI	CTGAAG	1 cut(s)	57
AcvI	CACGTG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	668
AflII	CTTAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	4 cut(s)	361, 770, 839, 854
AluBI	AGCT	5 cut(s)	229, 581, 713, 731, 813
AluI	AGCT	5 cut(s)	229, 581, 713, 731, 813
Alw26I	GTCTC	4 cut(s)	100, 211, 321, 400
AlwI	GGATC	3 cut(s)	108, 367, 700
AoxI	GGCC	2 cut(s)	45, 414
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	489, 841
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	3 cut(s)	76, 304, 773
AvaII	GGWCC	1 cut(s)	785
BanI	GGYRCC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	773, 794, 800
BceAI	ACGGC	4 cut(s)	180, 254, 265, 429
BcoDI	GTCTC	4 cut(s)	100, 211, 321, 400
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	5 cut(s)	45, 129, 168, 278, 384
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	5 cut(s)	46, 130, 169, 279, 385
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	405, 786
BmsI	GCATC	2 cut(s)	370, 784
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
Bpu10I	CCTNAGC	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	216, 853
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMII	CTCAG	3 cut(s)	239, 337, 723
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	395
Bsh1236I	CGCG	2 cut(s)	120, 128
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	47, 416
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	246
BslFI	GGGAC	4 cut(s)	181, 268, 354, 688
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	4 cut(s)	100, 211, 321, 400
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	4 cut(s)	181, 268, 354, 688
BsnI	GGCC	2 cut(s)	47, 416
Bsp1720I	GCTNAGC	1 cut(s)	732
BspANI	GGCC	2 cut(s)	47, 416
BspCNI	CTCAG	3 cut(s)	238, 336, 724
BspFNI	CGCG	2 cut(s)	120, 128
BspLI	GGNNCC	2 cut(s)	405, 786
BspPI	GGATC	3 cut(s)	108, 367, 700
BspT107I	GGYRCC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	399
BssNI	GRCGYC	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	481, 649
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	521
BstC8I	GCNNGC	4 cut(s)	21, 180, 459, 867
BstDEI	CTNAG	3 cut(s)	225, 323, 732
BstF5I	GGATG	2 cut(s)	216, 853
BstFNI	CGCG	2 cut(s)	120, 128
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstMAI	GTCTC	4 cut(s)	100, 211, 321, 400
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 134, 235, 454, 810
BstNSI	RCATGY	2 cut(s)	461, 869
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	2 cut(s)	120, 128
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	47, 416
BtgZI	GCGATG	1 cut(s)	819
BtsCI	GGATG	2 cut(s)	216, 853
Cac8I	GCNNGC	4 cut(s)	21, 180, 459, 867
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	1 cut(s)	126
CviAII	CATG	4 cut(s)	458, 575, 601, 866
DdeI	CTNAG	3 cut(s)	225, 323, 732
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	3 cut(s)	64, 146, 244
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	57
Eco72I	CACGTG	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	461, 578, 604, 869
FaqI	GGGAC	4 cut(s)	181, 268, 354, 688
FatI	CATG	4 cut(s)	457, 574, 600, 865
FauI	CCCGC	1 cut(s)	125
FauNDI	CATATG	1 cut(s)	586
Fnu4HI	GCNGC	5 cut(s)	45, 129, 168, 278, 384
FokI	GGATG	2 cut(s)	203, 860
Fsp4HI	GCNGC	5 cut(s)	45, 129, 168, 278, 384
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	5 cut(s)	45, 129, 168, 278, 384
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	47, 416
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	461, 578, 604, 869
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	309, 342
HphI	GGTGA	3 cut(s)	76, 304, 773
Hpy188III	TCNNGA	4 cut(s)	241, 298, 767, 788
Hpy99I	CGWCG	3 cut(s)	142, 155, 320
HpyAV	CCTTC	3 cut(s)	367, 607, 683
HpyCH4III	ACNGT	2 cut(s)	481, 649
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	2 cut(s)	383, 461
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 134, 235, 454, 810
HpyF3I	CTNAG	3 cut(s)	225, 323, 732
HpySE526I	ACGT	1 cut(s)	520
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	4 cut(s)	461, 578, 604, 869
HspAI	GCGC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	3 cut(s)	675, 722, 801
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	2 cut(s)	370, 784
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	520
MboII	GAAGA	9 cut(s)	17, 37, 50, 154, 549, 559, 715, 782, 866
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	5 cut(s)	250, 489, 509, 632, 841
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	3 cut(s)	174, 483, 635
MspA1I	CMGCKG	2 cut(s)	386, 731
MspCI	CTTAAG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	120, 128
MwoI	GCNNNNNNNGC	5 cut(s)	41, 134, 235, 454, 810
NdeI	CATATG	1 cut(s)	586
NlaIII	CATG	4 cut(s)	461, 578, 604, 869
NlaIV	GGNNCC	2 cut(s)	405, 786
NspI	RCATGY	2 cut(s)	461, 869
PaeI	GCATGC	2 cut(s)	461, 869
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	309
PflFI	GACNNNGTC	2 cut(s)	92, 332
PkrI	GCNGC	5 cut(s)	46, 130, 169, 279, 385
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	336
PmaCI	CACGTG	1 cut(s)	521
PmlI	CACGTG	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	521
PspCI	CACGTG	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	405, 786
PspPI	GGNCC	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	2 cut(s)	92, 332
PvuI	CGATCG	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	731
SaqAI	TTAA	3 cut(s)	174, 483, 635
SatI	GCNGC	5 cut(s)	45, 129, 168, 278, 384
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	370, 784
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	173, 296
SmoI	CTYRAG	2 cut(s)	173, 296
SphI	GCATGC	2 cut(s)	461, 869
Sse9I	AATT	5 cut(s)	250, 489, 509, 632, 841
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	481, 649
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	4 cut(s)	140, 242, 419, 494
TasI	AATT	5 cut(s)	250, 489, 509, 632, 841
TauI	GCSGC	4 cut(s)	47, 131, 170, 280
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	3 cut(s)	174, 483, 635
Tru9I	TTAA	3 cut(s)	174, 483, 635
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	522, 542, 626
TspGWI	ACGGA	2 cut(s)	193, 455
Tth111I	GACNNNGTC	2 cut(s)	92, 332
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	2 cut(s)	489, 841
XceI	RCATGY	2 cut(s)	461, 869
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.