Rh7AG060800

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003016
Physical Location & Seq
Forward (+)
4253901 .. 4258237
4337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG060800.1

Sequence Viewer

Length: 741 bp
ATGGAGTTTTGGAACAGAGCCCGCGGCGTCGCCGAGGAGGCGGCGAAGCGATCGCAGGATCTCACGATCGGCGGCGCGTGGAAGCTCTCCGACACCGCCAAGCGCTCCAAGGAGATCATCGCCGCCGAGGCCTCCAAGCGAGCCGATCACATCAAGCAATTTGCCGACGCCTTTGCTCCGTCGCTACTGCAGCCACCTGCGGCGGAGATTCCACAACAACAAGAACAAGAGAAGGATCTGGAAGCGTTCGGAATCACCGAGGAGTTGAGAGACTTCGCTAACGGAATGACTTTTGTCACGTTCAAAAATTTTCCTCTTCCAGATGATACACGATTCTCTGACGTTGCAACAGTCACAAATGTTAGGCAGGATCTTACGGAGTGGCAAGAAAAGCATGCTAATCTTGTTCTTTCGACCGTCGAGGAAATTTCAAAATTAAGATATGAATTGTGTCCACGTGTTATGACCGAAAGGAAATTTTGGAGGATATATTTCATACTAGTTAACAATCATGTCGCACCCTATGAGAAGCGTTATCTGGAGGAAGTTAAGCAAAAGTCAACTGAACAATTGTTAGATGACAGAATAAAGGAACCTACTAAAGTTGAAACAACTTCTAAAGCAGAGGATAAGGAAGAAAAACATCACACTAAAACTTCAACCTCATCAACTACGGATCAAGACTTGGATGCATTTCTCCTGGGGGACAGTGATGATGATCCAGGTATCTTAGAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

246

Amino Acids

28.21

Weight (kDa)

4.97

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 126 - 172 6e-11 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccII CGCG 2 cut(s) 24, 77
AciI CCGC 8 cut(s) 22, 24, 41, 72, 96, 123, 200, 203
AclWI GGATC 5 cut(s) 66, 243, 378, 684, 713
AcsI RAATTY 3 cut(s) 307, 426, 476
AcvI CACGTG 1 cut(s) 458
AcyI GRCGYC 2 cut(s) 27, 168
AfeI AGCGCT 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 304, 432, 608, 660
AhlI ACTAGT 1 cut(s) 499
AjnI CCWGG 2 cut(s) 699, 721
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 264, 728
AlwI GGATC 5 cut(s) 66, 243, 378, 684, 713
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 190
ApoI RAATTY 3 cut(s) 307, 426, 476
AsiSI GCGATCGC 1 cut(s) 53
AspLEI GCGC 2 cut(s) 77, 105
AsuHPI GGTGA 1 cut(s) 247
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 458
BbvI GCAGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 2 cut(s) 701, 723
BcoDI GTCTC 2 cut(s) 264, 728
BcuI ACTAGT 1 cut(s) 499
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 205
BglI GCCNNNNNGGC 2 cut(s) 38, 128
BisI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
BlsI GCNGC 6 cut(s) 26, 43, 74, 124, 192, 202
Bme1390I CCNGG 2 cut(s) 701, 723
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 2 cut(s) 701, 723
BmsI GCATC 1 cut(s) 679
BoxI GACNNNNGTC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 560
BsaAI YACGTR 1 cut(s) 458
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 2 cut(s) 27, 168
BsaJI CCNNGG 6 cut(s) 22, 33, 108, 126, 258, 700
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 2 cut(s) 701, 723
BseDI CCNNGG 6 cut(s) 22, 33, 108, 126, 258, 700
BseGI GGATG 1 cut(s) 694
BseJI GATNNNNATC 1 cut(s) 717
BseRI GAGGAG 2 cut(s) 50, 275
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 2 cut(s) 24, 77
Bsh1285I CGRYCG 3 cut(s) 53, 69, 417
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 3 cut(s) 53, 69, 417
BslFI GGGAC 1 cut(s) 719
BsmAI GTCTC 2 cut(s) 264, 728
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
BspACI CCGC 8 cut(s) 22, 24, 41, 72, 96, 123, 200, 203
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 2 cut(s) 24, 77
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 5 cut(s) 66, 243, 378, 684, 713
BssECI CCNNGG 6 cut(s) 22, 33, 108, 126, 258, 700
BssMI GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
BssNI GRCGYC 2 cut(s) 27, 168
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 701, 723
Bst4CI ACNGT 3 cut(s) 352, 418, 710
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 2 cut(s) 27, 168
BstBAI YACGTR 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 22, 141, 396
BstDEI CTNAG 2 cut(s) 730, 738
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 2 cut(s) 24, 77
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 77, 105
BstKTI GATC 9 cut(s) 53, 61, 69, 117, 148, 238, 373, 679, 721
BstMAI GTCTC 2 cut(s) 264, 728
BstMBI GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
BstMCI CGRYCG 3 cut(s) 53, 69, 417
BstMWI GCNNNNNNNGC 4 cut(s) 38, 128, 190, 391
BstNI CCWGG 2 cut(s) 701, 723
BstNSI RCATGY 1 cut(s) 398
BstPAI GACNNNNGTC 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 699, 721
BstSFI CTRYAG 1 cut(s) 188
BstUI CGCG 2 cut(s) 24, 77
BstV1I GCAGC 1 cut(s) 202
BstX2I RGATCY 3 cut(s) 58, 235, 370
BstYI RGATCY 3 cut(s) 58, 235, 370
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 22, 141, 396
CfoI GCGC 2 cut(s) 77, 105
Cfr42I CCGCGG 1 cut(s) 25
CseI GACGC 2 cut(s) 16, 176
CviAII CATG 2 cut(s) 395, 512
CviJI RGCY 5 cut(s) 20, 85, 131, 143, 193
CviKI_1 RGCY 5 cut(s) 20, 85, 131, 143, 193
DdeI CTNAG 2 cut(s) 730, 738
DpnI GATC 9 cut(s) 52, 60, 68, 116, 147, 237, 372, 678, 720
DpnII GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 699, 721
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 398, 515
FaiI YATR 7 cut(s) 396, 444, 464, 490, 497, 513, 525
FaqI GGGAC 1 cut(s) 719
FatI CATG 2 cut(s) 394, 511
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
FspBI CTAG 1 cut(s) 500
GlaI GCGC 2 cut(s) 76, 104
GluI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 1 cut(s) 131
HgaI GACGC 2 cut(s) 16, 176
HhaI GCGC 2 cut(s) 77, 105
Hin1I GRCGYC 2 cut(s) 27, 168
Hin1II CATG 2 cut(s) 398, 515
Hin6I GCGC 2 cut(s) 75, 103
HinP1I GCGC 2 cut(s) 75, 103
HincII GTYRAC 2 cut(s) 505, 561
HindII GTYRAC 2 cut(s) 505, 561
HinfI GANTC 3 cut(s) 208, 252, 333
HpaI GTTAAC 1 cut(s) 505
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 3 cut(s) 455, 505, 561
Hpy188I TCNGA 3 cut(s) 91, 251, 340
Hpy188III TCNNGA 5 cut(s) 64, 239, 320, 539, 680
Hpy8I GTNNAC 3 cut(s) 455, 505, 561
Hpy99I CGWCG 4 cut(s) 32, 170, 184, 422
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 3 cut(s) 352, 418, 710
HpyCH4IV ACGT 3 cut(s) 299, 342, 457
HpyCH4V TGCA 3 cut(s) 190, 347, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 128, 190, 391
HpyF3I CTNAG 2 cut(s) 730, 738
HpySE526I ACGT 3 cut(s) 299, 342, 457
Hsp92I GRCGYC 2 cut(s) 27, 168
Hsp92II CATG 2 cut(s) 398, 515
HspAI GCGC 2 cut(s) 75, 103
KspAI GTTAAC 1 cut(s) 505
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
LmnI GCTCC 2 cut(s) 110, 181
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 679
MaeI CTAG 1 cut(s) 500
MaeII ACGT 3 cut(s) 299, 342, 457
MaeIII GTNAC 2 cut(s) 295, 352
MalI GATC 9 cut(s) 52, 60, 68, 116, 147, 237, 372, 678, 720
MboI GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
MboII GAAGA 2 cut(s) 308, 647
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 3 cut(s) 58, 235, 370
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 7 cut(s) 158, 307, 426, 434, 446, 476, 569
MmeI TCCRAC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 3 cut(s) 437, 504, 549
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 701, 723
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 2 cut(s) 701, 723
MvnI CGCG 2 cut(s) 24, 77
MwoI GCNNNNNNNGC 4 cut(s) 38, 128, 190, 391
NdeII GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
NlaIII CATG 2 cut(s) 398, 515
NlaIV GGNNCC 1 cut(s) 594
NmeAIII GCCGAG 2 cut(s) 58, 151
NmuCI GTSAC 2 cut(s) 295, 352
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PaqCI CACCTGC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 3 cut(s) 208, 252, 333
PkrI GCNGC 6 cut(s) 26, 43, 74, 124, 192, 202
Ple19I CGATCG 2 cut(s) 53, 69
PmaCI CACGTG 1 cut(s) 458
PmlI CACGTG 1 cut(s) 458
Ppu21I YACGTR 1 cut(s) 458
PshAI GACNNNNGTC 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 699, 721
PspCI CACGTG 1 cut(s) 458
PspGI CCWGG 2 cut(s) 699, 721
PspN4I GGNNCC 1 cut(s) 594
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 3 cut(s) 58, 235, 370
PvuI CGATCG 2 cut(s) 53, 69
RgaI GCGATCGC 1 cut(s) 53
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 3 cut(s) 437, 504, 549
SatI GCNGC 6 cut(s) 25, 42, 73, 123, 191, 201
Sau3AI GATC 9 cut(s) 50, 58, 66, 114, 145, 235, 370, 676, 718
ScrFI CCNGG 2 cut(s) 701, 723
SduI GDGCHC 1 cut(s) 22
SetI ASST 8 cut(s) 87, 199, 302, 345, 460, 598, 665, 727
SfaAI GCGATCGC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 679
SfcI CTRYAG 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 25
SgfI GCGATCGC 1 cut(s) 53
SgrBI CCGCGG 1 cut(s) 25
SpeI ACTAGT 1 cut(s) 499
SphI GCATGC 1 cut(s) 398
Sse9I AATT 7 cut(s) 158, 307, 426, 434, 446, 476, 569
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 8 cut(s) 22, 24, 41, 72, 96, 123, 200, 203
SspMI CTAG 1 cut(s) 500
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 699, 721
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 352, 418, 710
TaiI ACGT 3 cut(s) 302, 345, 460
TaqI TCGA 2 cut(s) 413, 420
TaqII GACCGA 1 cut(s) 482
TasI AATT 7 cut(s) 158, 307, 426, 434, 446, 476, 569
TauI GCSGC 5 cut(s) 27, 44, 75, 125, 203
TfiI GAWTC 3 cut(s) 208, 252, 333
Tru1I TTAA 3 cut(s) 437, 504, 549
Tru9I TTAA 3 cut(s) 437, 504, 549
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 2 cut(s) 295, 352
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 295, 352
TspDTI ATGAA 2 cut(s) 459, 484
TspGWI ACGGA 4 cut(s) 168, 297, 392, 689
TspRI CASTG 1 cut(s) 715
XapI RAATTY 3 cut(s) 307, 426, 476
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.