MD06G1205900.v1.1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015444
Physical Location & Seq
Reverse (-)
34063347 .. 34064321
975 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1205900.v1.1.491

Sequence Viewer

Length: 975 bp
ATGCAAGACATTCATTCAGTGAGAGGTGGAGGGAGGTTCTTCGGGGGCTCGGGAGGAGGAGACCCGCGGCTGAGACCGCATCAGCACCCGAACCAGCATGCCTTGAAGTGCCCGCGGTGCGATTCCCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAGGCCTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGATGTCGCAAAACTAAACGCTCCAAGACGAAAAATTCATCTTCGTCATCGCCGATATCATCTCCGCCGCCTCCTCCACCGCAACCGAGCAGCGCCGATCAGAACAAATCCAGCTCTCGTTCGAGCAGCGAGAGCTCCAGCCTCACTAATACCACCGCGGCCGCTGCCACTGCCGCCACGGAGGCCGTCTCAGAGCCGTCTTCGACCGGCTCCGCTTCCAACTTACTGAGCAATATTCATAATCCGGAATCCAATTTCTTCATTTCTCAGGGCGGCGCAAACGGTGGCTTTGAGCCCGGCGCTTCGGCGGCAGCGCTGCTGGAGCATAGTACGGAGATTAACGGAATTTTCTCGGAGATCGGGAGCTTCACGAGCTTGATCACGTCTTCCAACGACATGCCGTTTAGCTTCGGAAACATCAACGGCTCGCCGTTTAATCAGCAAGGCAACCATGATCATAATCAAGTTCATCAAACCCAATGGGGGCAGCAGAATCAGGGAGTGAAGATGCAGGAGATCAGCGGTGGATTGCTGGATCAGACGGCGCAGGTGGATCTATCAGTGTTCCAAAACAGATCCCACGTCGGAGGAGGAGGATTTGGATCGTTGGATTGGCAACCGGGATCAGGTGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAAGCATACTGGAGTCATAGTCAATGGACTGATCAAGACCACCCTACTCTCTACCTCCCGTAA

Protein Analysis

325

Amino Acids

34.68

Weight (kDa)

7.21

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 33 - 89 1.1e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60850
fragaria_vesca FvH4_5g13390
malus_domestica MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica Prupe.5G210200_v2.0.a1
pyrus_communis pycom06g18370 pycom14g17960
rosa_chinensis RchiOBHm_Chr7g0183751
rosa_laevigata RLG00000005026
rosa_multiflora Rmu_sc0003610.1_g000031
rosa_rugosa Rorug06G0460000
rosa_samantha Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana Rw7G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 784
Acc36I ACCTGC 1 cut(s) 784
AccII CGCG 3 cut(s) 67, 115, 404
AccIII TCCGGA 1 cut(s) 490
AclWI GGATC 5 cut(s) 789, 807, 816, 856, 877
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 2 cut(s) 280, 591
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 577
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 3 cut(s) 242, 729, 872
AgsI TTSAA 1 cut(s) 106
AjiI CACGTC 2 cut(s) 630, 829
AluBI AGCT 5 cut(s) 360, 381, 612, 621, 654
AluI AGCT 5 cut(s) 360, 381, 612, 621, 654
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 3 cut(s) 54, 67, 439
AlwI GGATC 5 cut(s) 789, 807, 816, 856, 877
Ama87I CYCGRG 1 cut(s) 49
Aor13HI TCCGGA 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 3 cut(s) 189, 405, 429
ApeKI GCWGC 6 cut(s) 336, 372, 410, 557, 562, 733
ApoI RAATTY 2 cut(s) 280, 591
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspLEI GCGC 5 cut(s) 341, 524, 548, 562, 793
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 2 cut(s) 543, 867
AsuHPI GGTGA 1 cut(s) 887
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 113
BanII GRGCYC 3 cut(s) 50, 383, 543
BauI CACGAG 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 438, 624
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 6 cut(s) 348, 384, 397, 549, 569, 745
BceAI ACGGC 6 cut(s) 416, 427, 631, 661, 685, 804
BclI TGATCA 5 cut(s) 624, 700, 877, 910, 943
BcnI CCSGG 2 cut(s) 543, 867
BcoDI GTCTC 3 cut(s) 54, 67, 439
BfoI RGCGCY 3 cut(s) 342, 549, 563
BfuAI ACCTGC 1 cut(s) 784
BglI GCCNNNNNGGC 1 cut(s) 428
Bme1390I CCNGG 2 cut(s) 543, 867
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 49
BmgBI CACGTC 2 cut(s) 630, 829
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 543, 867
BmsI GCATC 2 cut(s) 88, 744
BpiI GAAGAC 2 cut(s) 438, 624
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 3 cut(s) 367, 587, 943
BpuMI CCSGG 2 cut(s) 543, 867
BsaBI GATNNNNATC 2 cut(s) 705, 847
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 2 cut(s) 54, 67
BsaJI CCNNGG 4 cut(s) 65, 113, 402, 423
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 916, 946
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 729, 872
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 2 cut(s) 209, 926
Bse8I GATNNNNATC 2 cut(s) 705, 847
BseAI TCCGGA 1 cut(s) 490
BseDI CCNNGG 4 cut(s) 65, 113, 402, 423
BseGI GGATG 1 cut(s) 254
BseJI GATNNNNATC 2 cut(s) 705, 847
BseLI CCNNNNNNNGG 3 cut(s) 242, 729, 872
BseMII CTCAG 4 cut(s) 62, 450, 464, 527
BseNI ACTGG 2 cut(s) 209, 926
BseRI GAGGAG 5 cut(s) 69, 72, 309, 849, 852
BseSI GKGCMC 1 cut(s) 113
BseX3I CGGCCG 1 cut(s) 405
BseXI GCAGC 6 cut(s) 348, 384, 397, 549, 569, 745
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 3 cut(s) 67, 115, 404
Bsh1285I CGRYCG 2 cut(s) 408, 453
BshFI GGCC 3 cut(s) 191, 407, 431
BsiEI CGRYCG 2 cut(s) 408, 453
BsiHKAI GWGCWC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 4 cut(s) 453, 491, 543, 866
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 242, 729, 872
BsmAI GTCTC 3 cut(s) 54, 67, 439
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 191, 407, 431
Bso31I GGTCTC 2 cut(s) 54, 67
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 4 cut(s) 50, 113, 383, 543
Bsp13I TCCGGA 1 cut(s) 490
BspANI GGCC 3 cut(s) 191, 407, 431
BspCNI CTCAG 4 cut(s) 63, 449, 465, 526
BspEI TCCGGA 1 cut(s) 490
BspFNI CGCG 3 cut(s) 67, 115, 404
BspLI GGNNCC 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 5 cut(s) 789, 807, 816, 856, 877
BspTNI GGTCTC 2 cut(s) 54, 67
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 2 cut(s) 209, 926
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 4 cut(s) 65, 113, 402, 423
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 616
Bst2BI CACGAG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 530, 907
BstACI GRCGYC 1 cut(s) 219
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 4 cut(s) 99, 113, 193, 674
BstDEI CTNAG 4 cut(s) 71, 436, 473, 513
BstDSI CCRYGG 4 cut(s) 65, 113, 402, 423
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 3 cut(s) 67, 115, 404
BstH2I RGCGCY 3 cut(s) 342, 549, 563
BstHHI GCGC 5 cut(s) 341, 524, 548, 562, 793
BstMAI GTCTC 3 cut(s) 54, 67, 439
BstMCI CGRYCG 2 cut(s) 408, 453
BstNSI RCATGY 2 cut(s) 101, 646
BstSCI CCNGG 2 cut(s) 541, 865
BstSLI GKGCMC 1 cut(s) 113
BstUI CGCG 3 cut(s) 67, 115, 404
BstV1I GCAGC 6 cut(s) 348, 384, 397, 549, 569, 745
BstV2I GAAGAC 2 cut(s) 438, 624
BstX2I RGATCY 2 cut(s) 799, 821
BstYI RGATCY 2 cut(s) 799, 821
BstZI CGGCCG 1 cut(s) 405
BsuRI GGCC 3 cut(s) 191, 407, 431
BtgI CCRYGG 4 cut(s) 65, 113, 402, 423
BtgZI GCGATG 1 cut(s) 279
BtrI CACGTC 2 cut(s) 630, 829
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 24, 414, 813
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 4 cut(s) 99, 113, 193, 674
CciNI GCGGCCGC 1 cut(s) 405
CfoI GCGC 5 cut(s) 341, 524, 548, 562, 793
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 207
Cfr42I CCGCGG 3 cut(s) 68, 116, 405
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 576
CviAII CATG 3 cut(s) 98, 643, 698
CviQI GTAC 1 cut(s) 576
DdeI CTNAG 4 cut(s) 71, 436, 473, 513
EaeI YGGCCR 1 cut(s) 405
EagI CGGCCG 1 cut(s) 405
EciI GGCGGA 2 cut(s) 261, 300
Ecl136II GAGCTC 1 cut(s) 381
EclXI CGGCCG 1 cut(s) 405
Eco147I AGGCCT 1 cut(s) 191
Eco24I GRGCYC 3 cut(s) 50, 383, 543
Eco31I GGTCTC 2 cut(s) 54, 67
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 207
Eco47III AGCGCT 1 cut(s) 561
Eco52I CGGCCG 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 381
EcoRV GATATC 1 cut(s) 303
EcoT38I GRGCYC 3 cut(s) 50, 383, 543
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 3 cut(s) 101, 646, 701
FaiI YATR 8 cut(s) 99, 486, 573, 644, 699, 705, 919, 930
FaqI GGGAC 1 cut(s) 218
FatI CATG 3 cut(s) 97, 642, 697
FauI CCCGC 3 cut(s) 72, 120, 182
FbaI TGATCA 5 cut(s) 624, 700, 877, 910, 943
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 3 cut(s) 50, 383, 543
GlaI GCGC 5 cut(s) 340, 523, 547, 561, 792
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 3 cut(s) 367, 587, 943
HaeII RGCGCY 3 cut(s) 342, 549, 563
HaeIII GGCC 3 cut(s) 191, 407, 431
HapII CCGG 4 cut(s) 453, 491, 543, 866
HgaI GACGC 1 cut(s) 208
HhaI GCGC 5 cut(s) 341, 524, 548, 562, 793
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 101, 646, 701
Hin6I GCGC 5 cut(s) 339, 522, 546, 560, 791
HinP1I GCGC 5 cut(s) 339, 522, 546, 560, 791
HinfI GANTC 4 cut(s) 122, 494, 739, 925
HpaII CCGG 4 cut(s) 453, 491, 543, 866
HphI GGTGA 1 cut(s) 887
Hpy188I TCNGA 6 cut(s) 348, 439, 601, 659, 786, 833
Hpy188III TCNNGA 5 cut(s) 51, 491, 607, 616, 947
Hpy99I CGWCG 2 cut(s) 242, 833
HpyCH4III ACNGT 2 cut(s) 530, 907
HpyCH4IV ACGT 3 cut(s) 231, 629, 828
HpyCH4V TGCA 3 cut(s) 4, 186, 757
HpyF3I CTNAG 4 cut(s) 71, 436, 473, 513
HpySE526I ACGT 3 cut(s) 231, 629, 828
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 101, 646, 701
HspAI GCGC 5 cut(s) 339, 522, 546, 560, 791
Kpn2I TCCGGA 1 cut(s) 490
Ksp22I TGATCA 5 cut(s) 624, 700, 877, 910, 943
KspI CCGCGG 3 cut(s) 68, 116, 405
LmnI GCTCC 5 cut(s) 272, 386, 461, 568, 609
Lsp1109I GCAGC 6 cut(s) 348, 384, 397, 549, 569, 745
LweI GCATC 2 cut(s) 88, 744
MaeII ACGT 3 cut(s) 231, 629, 828
MboII GAAGA 7 cut(s) 31, 279, 438, 496, 624, 763, 887
MflI RGATCY 2 cut(s) 799, 821
MhlI GDGCHC 4 cut(s) 50, 113, 383, 543
MluCI AATT 3 cut(s) 280, 499, 591
MlyI GAGTC 1 cut(s) 934
MmeI TCCRAC 4 cut(s) 489, 660, 811, 834
MroI TCCGGA 1 cut(s) 490
MseI TTAA 2 cut(s) 585, 681
MspA1I CMGCKG 5 cut(s) 67, 115, 404, 410, 768
MspI CCGG 4 cut(s) 453, 491, 543, 866
MspR9I CCNGG 2 cut(s) 543, 867
MvnI CGCG 3 cut(s) 67, 115, 404
NciI CCSGG 2 cut(s) 543, 867
NlaIII CATG 3 cut(s) 101, 646, 701
NlaIV GGNNCC 1 cut(s) 457
NotI GCGGCCGC 1 cut(s) 405
NspI RCATGY 2 cut(s) 101, 646
PaeI GCATGC 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 784
PceI AGGCCT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 3 cut(s) 122, 494, 739
PleI GAGTC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 933
Psp124BI GAGCTC 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 2 cut(s) 799, 821
RsaI GTAC 1 cut(s) 577
RsaNI GTAC 1 cut(s) 576
SacI GAGCTC 1 cut(s) 383
SacII CCGCGG 3 cut(s) 68, 116, 405
SaqAI TTAA 2 cut(s) 585, 681
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 934
ScrFI CCNGG 2 cut(s) 543, 867
SduI GDGCHC 4 cut(s) 50, 113, 383, 543
SfaNI GCATC 2 cut(s) 88, 744
Sfr303I CCGCGG 3 cut(s) 68, 116, 405
SgrBI CCGCGG 3 cut(s) 68, 116, 405
SinI GGWCC 1 cut(s) 207
SphI GCATGC 1 cut(s) 101
Sse9I AATT 3 cut(s) 280, 499, 591
SseBI AGGCCT 1 cut(s) 191
SspI AATATT 1 cut(s) 481
SstI GAGCTC 1 cut(s) 383
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 541, 865
TaaI ACNGT 2 cut(s) 530, 907
TaiI ACGT 3 cut(s) 234, 632, 831
TaqI TCGA 2 cut(s) 368, 449
TasI AATT 3 cut(s) 280, 499, 591
TfiI GAWTC 3 cut(s) 122, 494, 739
Tru1I TTAA 2 cut(s) 585, 681
Tru9I TTAA 2 cut(s) 585, 681
TscAI CASTG 3 cut(s) 24, 421, 813
TseI GCWGC 6 cut(s) 336, 372, 410, 557, 562, 733
TspDTI ATGAA 4 cut(s) 273, 473, 496, 704
TspGWI ACGGA 3 cut(s) 440, 593, 603
TspRI CASTG 3 cut(s) 24, 421, 813
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 2 cut(s) 280, 591
XceI RCATGY 2 cut(s) 101, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.