pycom06g18370

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015444
Physical Location & Seq
Reverse (-)
22159545 .. 22160277
733 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18370.1

Sequence Viewer

Length: 684 bp
ATGTCATCATCCCCGCCGCCTCCTCCACCGCAACCGAACAGCGCCGATCAGAACAAATCCAGCTCTCGTTCGAGTAGCGAGAGCTCCAGCCTCACTAACACCACCGCGGCCGCTGCCACTGCCGCCACGGAGGCCGTCTCAGAGCCGTCTTCGACCGGCTCCGCTTCAAACTTACTGAGCAATATTCATAATCCGGAATCCAGTTTCTTCATTTCTCAGGGCGGCGCAAACGGTGGCTTTGAGCCCGGCGCTTCGGCGGCAGCGCTGCTAGATCATAGTACGGAGATTAACGGAATTTTCTCGGAGATCGGGAGCTTCACCAGCTTGATCACGTCTTCCAACGACATGCCGTTTAGTTTCGGAAACATCAACGGCTCGCCGTTTAATCAGCAAAACAATCATGATCATAATCAAGTTCATCAAAACCAATGGGGGCAGCAGAACCAGGGAGTGAAGATGCAGGAGATCAGCGGTGGATTGCTGGATCAGACGGTGCAGGTGGATCTATCAGTGTTCCAAAACAGATCCCACGGCGGAGGAGGAGGAGGAGGATTTGGATCGTTGGATTGGCAACCGGGATCAGGTGATCAAGGTATGTTTGATCTTCCTAACACCGTTGATCAAGCATACTGGAGTCATAGTCAATGGACTGATCAAGACCACCCTACTCTCTACCTCCCGTAA

Protein Analysis

228

Amino Acids

23.78

Weight (kDa)

4.39

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60850
fragaria_vesca FvH4_5g13390
malus_domestica MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica Prupe.5G210200_v2.0.a1
pyrus_communis pycom06g18370 pycom14g17960
rosa_chinensis RchiOBHm_Chr7g0183751
rosa_laevigata RLG00000005026
rosa_multiflora Rmu_sc0003610.1_g000031
rosa_rugosa Rorug06G0460000
rosa_samantha Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana Rw7G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 487
AccII CGCG 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 193
AclWI GGATC 5 cut(s) 492, 510, 519, 565, 586
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 280
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 1 cut(s) 168
AjiI CACGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 63, 84, 315, 324
AluI AGCT 4 cut(s) 63, 84, 315, 324
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 5 cut(s) 492, 510, 519, 565, 586
Aor13HI TCCGGA 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 2 cut(s) 108, 132
ApeKI GCWGC 4 cut(s) 113, 260, 265, 436
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 4 cut(s) 44, 227, 251, 265
AsuC2I CCSGG 2 cut(s) 246, 576
AsuHPI GGTGA 2 cut(s) 310, 596
BanII GRGCYC 2 cut(s) 86, 246
BbsI GAAGAC 2 cut(s) 141, 327
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 4 cut(s) 100, 252, 272, 448
BceAI ACGGC 6 cut(s) 119, 130, 334, 364, 388, 547
BciT130I CCWGG 1 cut(s) 446
BclI TGATCA 5 cut(s) 327, 403, 586, 619, 652
BcnI CCSGG 2 cut(s) 246, 576
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 3 cut(s) 45, 252, 266
BfuAI ACCTGC 1 cut(s) 487
BglI GCCNNNNNGGC 1 cut(s) 131
Bme1390I CCNGG 3 cut(s) 246, 446, 576
BmgBI CACGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 3 cut(s) 246, 446, 576
BmsI GCATC 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 141, 327
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 70, 652
BpuMI CCSGG 2 cut(s) 246, 576
BsaBI GATNNNNATC 2 cut(s) 408, 556
BsaJI CCNNGG 4 cut(s) 105, 126, 445, 529
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 201, 635
Bse8I GATNNNNATC 2 cut(s) 408, 556
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 4 cut(s) 105, 126, 445, 529
BseGI GGATG 1 cut(s) 8
BseJI GATNNNNATC 2 cut(s) 408, 556
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 3 cut(s) 153, 167, 230
BseNI ACTGG 2 cut(s) 201, 635
BseRI GAGGAG 5 cut(s) 12, 552, 555, 558, 561
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 4 cut(s) 100, 252, 272, 448
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 2 cut(s) 111, 156
BshFI GGCC 2 cut(s) 110, 134
BsiEI CGRYCG 2 cut(s) 111, 156
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 4 cut(s) 156, 194, 246, 575
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 110, 134
Bsp1286I GDGCHC 2 cut(s) 86, 246
Bsp13I TCCGGA 1 cut(s) 193
BspANI GGCC 2 cut(s) 110, 134
BspCNI CTCAG 3 cut(s) 152, 168, 229
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 5 cut(s) 492, 510, 519, 565, 586
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 2 cut(s) 201, 635
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 105, 126, 445, 529
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 3 cut(s) 233, 493, 616
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 139, 176, 216
BstDSI CCRYGG 3 cut(s) 105, 126, 529
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 107
BstH2I RGCGCY 3 cut(s) 45, 252, 266
BstHHI GCGC 4 cut(s) 44, 227, 251, 265
BstMAI GTCTC 1 cut(s) 142
BstMCI CGRYCG 2 cut(s) 111, 156
BstMWI GCNNNNNNNGC 6 cut(s) 113, 119, 122, 131, 257, 321
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 3 cut(s) 244, 444, 574
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 4 cut(s) 100, 252, 272, 448
BstV2I GAAGAC 2 cut(s) 141, 327
BstX2I RGATCY 2 cut(s) 502, 524
BstYI RGATCY 2 cut(s) 502, 524
BstZI CGGCCG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 110, 134
BtgI CCRYGG 3 cut(s) 105, 126, 529
BtrI CACGTC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 117, 516
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 377
CciI TCATGA 1 cut(s) 400
CciNI GCGGCCGC 1 cut(s) 108
CfoI GCGC 4 cut(s) 44, 227, 251, 265
Cfr10I RCCGGY 1 cut(s) 155
Cfr42I CCGCGG 1 cut(s) 108
Csp6I GTAC 1 cut(s) 279
CviAII CATG 2 cut(s) 346, 401
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 3 cut(s) 139, 176, 216
EaeI YGGCCR 1 cut(s) 108
EagI CGGCCG 1 cut(s) 108
EciI GGCGGA 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 84
EclXI CGGCCG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 86, 246
Eco47III AGCGCT 1 cut(s) 264
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 444
EcoT38I GRGCYC 2 cut(s) 86, 246
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 2 cut(s) 349, 404
FaiI YATR 8 cut(s) 189, 276, 347, 402, 408, 596, 628, 639
FatI CATG 2 cut(s) 345, 400
FauI CCCGC 1 cut(s) 21
FbaI TGATCA 5 cut(s) 327, 403, 586, 619, 652
FriOI GRGCYC 2 cut(s) 86, 246
FspBI CTAG 1 cut(s) 269
GlaI GCGC 4 cut(s) 43, 226, 250, 264
GsuI CTGGAG 2 cut(s) 70, 652
HaeII RGCGCY 3 cut(s) 45, 252, 266
HaeIII GGCC 2 cut(s) 110, 134
HapII CCGG 4 cut(s) 156, 194, 246, 575
HhaI GCGC 4 cut(s) 44, 227, 251, 265
Hin1II CATG 2 cut(s) 349, 404
Hin6I GCGC 4 cut(s) 42, 225, 249, 263
HinP1I GCGC 4 cut(s) 42, 225, 249, 263
HinfI GANTC 2 cut(s) 197, 634
HpaII CCGG 4 cut(s) 156, 194, 246, 575
HphI GGTGA 2 cut(s) 310, 596
Hpy188I TCNGA 5 cut(s) 51, 142, 304, 362, 489
Hpy188III TCNNGA 4 cut(s) 194, 310, 401, 656
HpyCH4III ACNGT 3 cut(s) 233, 493, 616
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 460, 496
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 119, 122, 131, 257, 321
HpyF3I CTNAG 3 cut(s) 139, 176, 216
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 2 cut(s) 349, 404
HspAI GCGC 4 cut(s) 42, 225, 249, 263
Kpn2I TCCGGA 1 cut(s) 193
Ksp22I TGATCA 5 cut(s) 327, 403, 586, 619, 652
KspI CCGCGG 1 cut(s) 108
LmnI GCTCC 3 cut(s) 89, 164, 312
Lsp1109I GCAGC 4 cut(s) 100, 252, 272, 448
LweI GCATC 1 cut(s) 447
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 332
MboII GAAGA 5 cut(s) 141, 199, 327, 466, 596
MflI RGATCY 2 cut(s) 502, 524
MhlI GDGCHC 2 cut(s) 86, 246
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 2 cut(s) 363, 543
MnlI CCTC 9 cut(s) 30, 33, 101, 124, 530, 533, 536, 539, 542
MroI TCCGGA 1 cut(s) 193
MseI TTAA 2 cut(s) 288, 384
MspA1I CMGCKG 3 cut(s) 107, 113, 471
MspI CCGG 4 cut(s) 156, 194, 246, 575
MspR9I CCNGG 3 cut(s) 246, 446, 576
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 6 cut(s) 113, 119, 122, 131, 257, 321
NciI CCSGG 2 cut(s) 246, 576
NlaIII CATG 2 cut(s) 349, 404
NlaIV GGNNCC 1 cut(s) 160
NotI GCGGCCGC 1 cut(s) 108
NspI RCATGY 1 cut(s) 349
PagI TCATGA 1 cut(s) 400
PaqCI CACCTGC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 642
PpsI GAGTC 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 160
PsuI RGATCY 2 cut(s) 502, 524
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SacI GAGCTC 1 cut(s) 86
SacII CCGCGG 1 cut(s) 108
SaqAI TTAA 2 cut(s) 288, 384
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 3 cut(s) 246, 446, 576
SduI GDGCHC 2 cut(s) 86, 246
SetI ASST 9 cut(s) 65, 86, 317, 326, 335, 501, 586, 595, 678
SfaNI GCATC 1 cut(s) 447
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
Sse9I AATT 1 cut(s) 294
SspI AATATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 244, 444, 574
TaaI ACNGT 3 cut(s) 233, 493, 616
TaiI ACGT 1 cut(s) 335
TaqI TCGA 2 cut(s) 71, 152
TasI AATT 1 cut(s) 294
TauI GCSGC 6 cut(s) 19, 110, 113, 125, 225, 260
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 2 cut(s) 288, 384
Tru9I TTAA 2 cut(s) 288, 384
TscAI CASTG 2 cut(s) 124, 516
TseI GCWGC 4 cut(s) 113, 260, 265, 436
TspDTI ATGAA 3 cut(s) 176, 199, 407
TspGWI ACGGA 3 cut(s) 143, 296, 306
TspRI CASTG 2 cut(s) 124, 516
XapI RAATTY 1 cut(s) 294
XceI RCATGY 1 cut(s) 349
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.