Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0015444

Physical Location & Seq

Genomic Coordinates Reverse (-)

130753 .. 131843

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atgcaagacattcagtcgatcggagggaggttcttcggcggcgccggaggcggagaccggaggctacggccacaccacaaccagaaccaccaggccttgaagtgccctaggtgcgactcgatcaacaccaagttctgctactacaacaactacaacctctctcagcctcgccacttctgcaagagctgccgccgctactggaccaaaggcggcgtcctccgcaacgtccccgtcggcggaggctgcaggaaaacgaagcgttccaagccgaagtcgtcttcttcttcatcgccggcctcaccgccgcagcagccgaacagcgagcgcagagccagctccaattccagcagcgagagctcgagcctcacgaacacggccaccgcaacggcgacggaggcggtctcggctccgtcttcgacgtcctcggcttccaatcttctcaacattcctcgtcccgagtccaaattcttcgtttccccaagcacgaatttcgaggcggctggagccaccatgctcgaacagagcgccacggaaattggaatgttctcggatattgggagcttcacgagcttgatcactgcctcctcgaacgacgtgccgttcggtttcaccaacatcaacgacatttccgtctcgccgttcaggccaaaccaaccgcctgccggtcatctaaatcaggtgcagcaaaaccagtgggagcagcaacacaaccagaataaccaggaactgaagatgccggagatcaccggaggaatgctagatcagacggctcaggtgaatttatcagtgttccaaaccaaaatcaacggcggaggaggaggagggtttgggtcgctggattggcagccggccggtgatcaaggtctgtttgatctccccaacaccgttgatcaagcatactggagtcagggtcagtggagcgatcaagaccctcccagtctctaccttccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

317

Amino Acids

34.33

Weight (kDa)

8.52

Isoelectric Point (pI)

67.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60850
fragaria_vesca	FvH4_5g13390
malus_domestica	MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica	Prupe.5G210200_v2.0.a1
pyrus_communis	pycom06g18370 pycom14g17960
rosa_chinensis	RchiOBHm_Chr7g0183751
rosa_laevigata	RLG00000005026
rosa_multiflora	Rmu_sc0003610.1_g000031
rosa_rugosa	Rorug06G0460000
rosa_samantha	Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana	Rw7G005040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AatII	GACGTC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	41
AcoI	YGGCCR	3 cut(s)	68, 375, 849
AcsI	RAATTY	3 cut(s)	464, 487, 778
AcuI	CTGAAG	1 cut(s)	749
AcyI	GRCGYC	3 cut(s)	42, 213, 419
AfiI	CCNNNNNNNGG	2 cut(s)	236, 662
AgsI	TTSAA	1 cut(s)	100
AhdI	GACNNNNNGTC	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	595
AjnI	CCWGG	2 cut(s)	90, 720
AluBI	AGCT	5 cut(s)	186, 336, 357, 561, 570
AluI	AGCT	5 cut(s)	186, 336, 357, 561, 570
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	4 cut(s)	48, 406, 637, 944
AlwNI	CAGNNNCTG	1 cut(s)	727
Ama87I	CYCGRG	2 cut(s)	358, 455
AoxI	GGCC	6 cut(s)	68, 93, 294, 375, 644, 849
ApeKI	GCWGC	8 cut(s)	186, 243, 307, 310, 348, 682, 700, 844
ApoI	RAATTY	3 cut(s)	464, 487, 778
ArsI	GACNNNNNNTTYG	4 cut(s)	198, 230, 584, 616
AspA2I	CCTAGG	1 cut(s)	107
AspLEI	GCGC	3 cut(s)	44, 327, 527
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	5 cut(s)	291, 601, 736, 787, 866
AvaI	CYCGRG	2 cut(s)	358, 455
AvaII	GGWCC	1 cut(s)	201
AvrII	CCTAGG	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	359
BauI	CACGAG	1 cut(s)	565
BbsI	GAAGAC	2 cut(s)	270, 405
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	8 cut(s)	173, 230, 319, 322, 360, 694, 712, 856
BceAI	ACGGC	7 cut(s)	83, 390, 402, 583, 622, 783, 823
BcgI	CGANNNNNNTGC	4 cut(s)	472, 506, 577, 611
BciT130I	CCWGG	2 cut(s)	92, 722
BclI	TGATCA	3 cut(s)	573, 856, 889
BcoDI	GTCTC	4 cut(s)	48, 406, 637, 944
BfaI	CTAG	2 cut(s)	108, 758
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	2 cut(s)	45, 528
BglI	GCCNNNNNGGC	1 cut(s)	643
BlnI	CCTAGG	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	92, 722
Bme18I	GGWCC	1 cut(s)	201
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmeT110I	CYCGRG	2 cut(s)	358, 455
BmgBI	CACGTC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	43, 408, 505
BmrFI	CCNGG	2 cut(s)	92, 722
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	1 cut(s)	723
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	2 cut(s)	270, 405
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	2 cut(s)	522, 922
Bpu10I	CCTNAGC	1 cut(s)	771
BsaHI	GRCGYC	3 cut(s)	42, 213, 419
BsaI	GGTCTC	2 cut(s)	48, 406
BsaJI	CCNNGG	3 cut(s)	107, 423, 528
BsaWI	WCCGGW	2 cut(s)	57, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	895, 925
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 662
Bse118I	RCCGGY	4 cut(s)	292, 662, 847, 851
Bse1I	ACTGG	4 cut(s)	203, 691, 905, 936
BseBI	CCWGG	2 cut(s)	92, 722
BseDI	CCNNGG	3 cut(s)	107, 423, 528
BseLI	CCNNNNNNNGG	2 cut(s)	236, 662
BseMII	CTCAG	2 cut(s)	176, 785
BseNI	ACTGG	4 cut(s)	203, 691, 905, 936
BseRI	GAGGAG	4 cut(s)	574, 828, 831, 834
BseSI	GKGCMC	1 cut(s)	107
BseX3I	CGGCCG	1 cut(s)	849
BseXI	GCAGC	8 cut(s)	173, 230, 319, 322, 360, 694, 712, 856
BsgI	GTGCAG	1 cut(s)	701
Bsh1285I	CGRYCG	2 cut(s)	21, 852
BshFI	GGCC	6 cut(s)	70, 95, 296, 377, 646, 851
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	2 cut(s)	21, 852
BsiHKAI	GWGCWC	1 cut(s)	359
BsiHKCI	CYCGRG	2 cut(s)	358, 455
BsiSI	CCGG	8 cut(s)	45, 58, 293, 663, 737, 747, 848, 852
BslFI	GGGAC	2 cut(s)	212, 438
BslI	CCNNNNNNNGG	2 cut(s)	236, 662
BsmAI	GTCTC	4 cut(s)	48, 406, 637, 944
BsmBI	CGTCTC	1 cut(s)	637
BsmFI	GGGAC	2 cut(s)	212, 438
BsmI	GAATGC	1 cut(s)	759
BsnI	GGCC	6 cut(s)	70, 95, 296, 377, 646, 851
Bso31I	GGTCTC	2 cut(s)	48, 406
BsoBI	CYCGRG	2 cut(s)	358, 455
Bsp1286I	GDGCHC	2 cut(s)	107, 359
Bsp143I	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
BspANI	GGCC	6 cut(s)	70, 95, 296, 377, 646, 851
BspCNI	CTCAG	2 cut(s)	175, 784
BspLI	GGNNCC	3 cut(s)	43, 408, 505
BspMAI	CTGCAG	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	2 cut(s)	48, 406
BsrFI	RCCGGY	4 cut(s)	292, 662, 847, 851
BsrI	ACTGG	4 cut(s)	203, 691, 905, 936
BssAI	RCCGGY	4 cut(s)	292, 662, 847, 851
BssECI	CCNNGG	3 cut(s)	107, 423, 528
BssMI	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
BssNI	GRCGYC	3 cut(s)	42, 213, 419
BssSI	CACGAG	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	92, 722
Bst4CI	ACNGT	1 cut(s)	886
BstACI	GRCGYC	3 cut(s)	42, 213, 419
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	5 cut(s)	294, 323, 334, 660, 849
BstDEI	CTNAG	2 cut(s)	162, 771
BstDSI	CCRYGG	1 cut(s)	528
BstH2I	RGCGCY	2 cut(s)	45, 528
BstHHI	GCGC	3 cut(s)	44, 327, 527
BstKTI	GATC	9 cut(s)	21, 123, 576, 744, 763, 859, 874, 892, 925
BstMAI	GTCTC	4 cut(s)	48, 406, 637, 944
BstMBI	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
BstMCI	CGRYCG	2 cut(s)	21, 852
BstNI	CCWGG	2 cut(s)	92, 722
BstSCI	CCNGG	2 cut(s)	90, 720
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	8 cut(s)	173, 230, 319, 322, 360, 694, 712, 856
BstV2I	GAAGAC	2 cut(s)	270, 405
BstZI	CGGCCG	1 cut(s)	849
BsuRI	GGCC	6 cut(s)	70, 95, 296, 377, 646, 851
BtgI	CCRYGG	1 cut(s)	528
BtgZI	GCGATG	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	4 cut(s)	576, 698, 792, 920
Cac8I	GCNNGC	5 cut(s)	294, 323, 334, 660, 849
CaiI	CAGNNNCTG	1 cut(s)	727
CfoI	GCGC	3 cut(s)	44, 327, 527
Cfr10I	RCCGGY	4 cut(s)	292, 662, 847, 851
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	1 cut(s)	202
CspCI	CAANNNNNGTGG	4 cut(s)	517, 552, 674, 709
CviAII	CATG	1 cut(s)	511
DdeI	CTNAG	2 cut(s)	162, 771
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	9 cut(s)	20, 122, 575, 743, 762, 858, 873, 891, 924
DpnII	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
DrdI	GACNNNNNNGTC	1 cut(s)	629
DriI	GACNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	3 cut(s)	68, 375, 849
EagI	CGGCCG	1 cut(s)	849
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EciI	GGCGGA	3 cut(s)	66, 252, 825
Ecl136II	GAGCTC	1 cut(s)	357
EclXI	CGGCCG	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	359
Eco31I	GGTCTC	2 cut(s)	48, 406
Eco47I	GGWCC	1 cut(s)	201
Eco52I	CGGCCG	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	2 cut(s)	358, 455
EcoICRI	GAGCTC	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	90, 720
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	359
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	637
FaeI	CATG	1 cut(s)	514
FaiI	YATR	2 cut(s)	512, 898
FaqI	GGGAC	2 cut(s)	212, 438
FatI	CATG	1 cut(s)	510
FbaI	TGATCA	3 cut(s)	573, 856, 889
FriOI	GRGCYC	1 cut(s)	359
FspBI	CTAG	2 cut(s)	108, 758
GlaI	GCGC	3 cut(s)	43, 326, 526
GsuI	CTGGAG	2 cut(s)	522, 922
HaeII	RGCGCY	2 cut(s)	45, 528
HaeIII	GGCC	6 cut(s)	70, 95, 296, 377, 646, 851
HapII	CCGG	8 cut(s)	45, 58, 293, 663, 737, 747, 848, 852
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	3 cut(s)	44, 327, 527
Hin1I	GRCGYC	3 cut(s)	42, 213, 419
Hin1II	CATG	1 cut(s)	514
Hin6I	GCGC	3 cut(s)	42, 325, 525
HinP1I	GCGC	3 cut(s)	42, 325, 525
HinfI	GANTC	3 cut(s)	116, 458, 904
HpaII	CCGG	8 cut(s)	45, 58, 293, 663, 737, 747, 848, 852
HphI	GGTGA	5 cut(s)	291, 601, 736, 787, 866
Hpy188I	TCNGA	3 cut(s)	23, 550, 765
Hpy188III	TCNNGA	4 cut(s)	367, 455, 565, 926
Hpy99I	CGWCG	4 cut(s)	236, 394, 421, 596
HpyCH4III	ACNGT	1 cut(s)	886
HpyCH4IV	ACGT	3 cut(s)	225, 419, 594
HpyCH4V	TGCA	4 cut(s)	4, 180, 246, 682
HpyF3I	CTNAG	2 cut(s)	162, 771
HpySE526I	ACGT	3 cut(s)	225, 419, 594
Hsp92I	GRCGYC	3 cut(s)	42, 213, 419
Hsp92II	CATG	1 cut(s)	514
HspAI	GCGC	3 cut(s)	42, 325, 525
KasI	GGCGCC	1 cut(s)	41
KroI	GCCGGC	2 cut(s)	292, 847
KroNI	GCCGGC	2 cut(s)	294, 849
Ksp22I	TGATCA	3 cut(s)	573, 856, 889
Kzo9I	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
LmnI	GCTCC	6 cut(s)	341, 412, 503, 558, 697, 918
Lsp1109I	GCAGC	8 cut(s)	173, 230, 319, 322, 360, 694, 712, 856
LweI	GCATC	1 cut(s)	723
MaeI	CTAG	2 cut(s)	108, 758
MaeII	ACGT	3 cut(s)	225, 419, 594
MalI	GATC	9 cut(s)	20, 122, 575, 743, 762, 858, 873, 891, 924
MboI	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
MboII	GAAGA	8 cut(s)	25, 270, 273, 276, 405, 428, 460, 742
MhlI	GDGCHC	2 cut(s)	107, 359
MluCI	AATT	5 cut(s)	340, 464, 487, 534, 778
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	3 cut(s)	110, 467, 913
MroNI	GCCGGC	2 cut(s)	292, 847
MspI	CCGG	8 cut(s)	45, 58, 293, 663, 737, 747, 848, 852
MspR9I	CCNGG	2 cut(s)	92, 722
Mva1269I	GAATGC	1 cut(s)	759
MvaI	CCWGG	2 cut(s)	92, 722
NaeI	GCCGGC	2 cut(s)	294, 849
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
NgoMIV	GCCGGC	2 cut(s)	292, 847
NlaIII	CATG	1 cut(s)	514
NlaIV	GGNNCC	3 cut(s)	43, 408, 505
NmeAIII	GCCGAG	2 cut(s)	383, 404
PaeR7I	CTCGAG	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	365, 627
PctI	GAATGC	1 cut(s)	759
PdiI	GCCGGC	2 cut(s)	294, 849
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	3 cut(s)	110, 466, 912
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	3 cut(s)	110, 466, 912
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	90, 720
PspGI	CCWGG	2 cut(s)	90, 720
PspN4I	GGNNCC	3 cut(s)	43, 408, 505
PspPI	GGNCC	1 cut(s)	201
PspXI	VCTCGAGB	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	727
PvuI	CGATCG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	359
Sau3AI	GATC	9 cut(s)	18, 120, 573, 741, 760, 856, 871, 889, 922
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	3 cut(s)	110, 467, 913
ScrFI	CCNGG	2 cut(s)	92, 722
SduI	GDGCHC	2 cut(s)	107, 359
SfaNI	GCATC	1 cut(s)	723
SfcI	CTRYAG	1 cut(s)	244
SfoI	GGCGCC	1 cut(s)	43
Sfr274I	CTCGAG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	340, 464, 487, 534, 778
SseBI	AGGCCT	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	108, 758
SstI	GAGCTC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	90, 720
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	886
TaiI	ACGT	3 cut(s)	228, 422, 597
TaqI	TCGA	7 cut(s)	17, 119, 359, 416, 492, 516, 587
TasI	AATT	5 cut(s)	340, 464, 487, 534, 778
TauI	GCSGC	6 cut(s)	42, 192, 195, 213, 307, 500
TscAI	CASTG	4 cut(s)	583, 698, 792, 920
TseI	GCWGC	8 cut(s)	186, 243, 307, 310, 348, 682, 700, 844
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	5 cut(s)	399, 407, 545, 619, 939
TspRI	CASTG	4 cut(s)	583, 698, 792, 920
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	3 cut(s)	464, 487, 778
XhoI	CTCGAG	1 cut(s)	358
XmaJI	CCTAGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	108, 758
ZraI	GACGTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.