Rh7CG062400

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015444
Physical Location & Seq
Reverse (-)
4522135 .. 4524045
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG062400.1

Sequence Viewer

Length: 957 bp
ATGCAAGACATTCAGTCGATCGGAGGGAGGTTCTTCGGCGGCGCCGGAGGCGGAGACCGGAGGCTACGGCCGCACCACAACCAGAACCACCAGGCCTTGAAGTGCCCTAGGTGCGACTCGCTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCTCGCCACTTCTGCAAGAGCTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGAGGCTGCAGGAAAACGAAGCGTTCCAAGCCGAAGTCTTCTTCTTCTTCATCGCCGGCCTCACCGCCGCAGCAGCCGAACAGCGAGCGCAGAGCCAGCTCCAATTCCAGCAGCGAGAGCTCGAGCCTCACGAACACGGCCACCGCAACGGCGACGGAGGCGGTCTCGGCTCCGTCTTCGACTTCCTCGGCTTCCAATCTTCTCAACATTCCTCGTCCCGAGTCCAAATTCTTCGTTTCCCCAAACACGAATTTCGAGGCGGCTGGAGCCACCATGCTCGAACAGAGCGCCACGGAAATTGGAATGTTCTCGGATATTGGGAGCTTCACGAGCTTGATCACGGCCTCCTCGAACGACGTGCCGTTCGGTTTCACCAACATCAACGACATTTCCGTCTCGCCGTTCAGGCCAAACCAACCGCCGGCCGGTCATCTAAATCAGGTGCAGCAAAACCAGTGGGAGCCGCAACACAACCAGAATAACCAGGAACTGAAGATGCCGGAGATCACCGGAGGAATGCTGGATCAGACGGCTCAGGTGGATTTGTCAGTGTTCCAAACCAAAATCAACGGCGCAGGAGGAGGAGGAGGGTTTGGGTCGCTGGATTGGCAGCCGGCCGGTGATCAAGGTCTGTTTGATCTCCCCAACACCGTTGAACAAGCATACTGGAGTCAGGGTCAGTGGACCGATCAAGACCCTCCCAGTCTCTACCTTCCGTAA

Protein Analysis

318

Amino Acids

34.43

Weight (kDa)

8.2

Isoelectric Point (pI)

66.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 31 - 87 1.2e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60850
fragaria_vesca FvH4_5g13390
malus_domestica MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica Prupe.5G210200_v2.0.a1
pyrus_communis pycom06g18370 pycom14g17960
rosa_chinensis RchiOBHm_Chr7g0183751
rosa_laevigata RLG00000005026
rosa_multiflora Rmu_sc0003610.1_g000031
rosa_rugosa Rorug06G0460000
rosa_samantha Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana Rw7G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 41
AclWI GGATC 1 cut(s) 768
AcoI YGGCCR 4 cut(s) 68, 375, 660, 852
AcsI RAATTY 2 cut(s) 464, 487
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 2 cut(s) 42, 213
AfiI CCNNNNNNNGG 3 cut(s) 236, 658, 662
AgsI TTSAA 2 cut(s) 100, 893
AhdI GACNNNNNGTC 1 cut(s) 13
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 2 cut(s) 90, 720
AluBI AGCT 5 cut(s) 186, 336, 357, 561, 570
AluI AGCT 5 cut(s) 186, 336, 357, 561, 570
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 4 cut(s) 48, 406, 637, 947
AlwI GGATC 1 cut(s) 768
AlwNI CAGNNNCTG 1 cut(s) 727
Ama87I CYCGRG 2 cut(s) 358, 455
AoxI GGCC 8 cut(s) 68, 93, 294, 375, 579, 644, 660, 852
ApeKI GCWGC 7 cut(s) 186, 243, 307, 310, 348, 682, 847
ApoI RAATTY 2 cut(s) 464, 487
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 584, 616
AspA2I CCTAGG 1 cut(s) 107
AspLEI GCGC 4 cut(s) 44, 327, 527, 812
AspS9I GGNCC 2 cut(s) 201, 921
AsuHPI GGTGA 4 cut(s) 291, 601, 736, 869
AvaI CYCGRG 2 cut(s) 358, 455
AvaII GGWCC 2 cut(s) 201, 921
AvrII CCTAGG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 359
BauI CACGAG 1 cut(s) 565
BbsI GAAGAC 2 cut(s) 267, 405
Bbv12I GWGCWC 1 cut(s) 359
BbvI GCAGC 7 cut(s) 173, 230, 319, 322, 360, 694, 859
BceAI ACGGC 8 cut(s) 83, 390, 402, 583, 594, 622, 783, 823
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 2 cut(s) 92, 722
BclI TGATCA 2 cut(s) 573, 859
BcoDI GTCTC 4 cut(s) 48, 406, 637, 947
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 244
BfoI RGCGCY 2 cut(s) 45, 528
BglI GCCNNNNNGGC 1 cut(s) 643
BlnI CCTAGG 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 92, 722
Bme18I GGWCC 2 cut(s) 201, 921
BmeRI GACNNNNNGTC 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 358, 455
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 201, 921
BmiI GGNNCC 4 cut(s) 43, 408, 505, 699
BmrFI CCNGG 2 cut(s) 92, 722
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 1 cut(s) 723
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 2 cut(s) 267, 405
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 2 cut(s) 522, 925
Bpu10I CCTNAGC 1 cut(s) 771
BsaHI GRCGYC 2 cut(s) 42, 213
BsaI GGTCTC 2 cut(s) 48, 406
BsaJI CCNNGG 3 cut(s) 107, 423, 528
BsaWI WCCGGW 2 cut(s) 57, 746
BsaXI ACNNNNNCTCC 2 cut(s) 898, 928
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 658, 662
Bse118I RCCGGY 5 cut(s) 292, 658, 662, 850, 854
Bse1I ACTGG 4 cut(s) 203, 691, 908, 939
BseBI CCWGG 2 cut(s) 92, 722
BseDI CCNNGG 3 cut(s) 107, 423, 528
BseLI CCNNNNNNNGG 3 cut(s) 236, 658, 662
BseMII CTCAG 2 cut(s) 176, 785
BseNI ACTGG 4 cut(s) 203, 691, 908, 939
BseRI GAGGAG 4 cut(s) 574, 831, 834, 837
BseSI GKGCMC 1 cut(s) 107
BseX3I CGGCCG 3 cut(s) 68, 660, 852
BseXI GCAGC 7 cut(s) 173, 230, 319, 322, 360, 694, 859
BsgI GTGCAG 1 cut(s) 701
Bsh1285I CGRYCG 4 cut(s) 21, 71, 663, 855
BshFI GGCC 8 cut(s) 70, 95, 296, 377, 581, 646, 662, 854
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 4 cut(s) 21, 71, 663, 855
BsiHKAI GWGCWC 1 cut(s) 359
BsiHKCI CYCGRG 2 cut(s) 358, 455
BsiSI CCGG 9 cut(s) 45, 58, 293, 659, 663, 737, 747, 851, 855
BslFI GGGAC 2 cut(s) 212, 438
BslI CCNNNNNNNGG 3 cut(s) 236, 658, 662
BsmAI GTCTC 4 cut(s) 48, 406, 637, 947
BsmBI CGTCTC 1 cut(s) 637
BsmFI GGGAC 2 cut(s) 212, 438
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 8 cut(s) 70, 95, 296, 377, 581, 646, 662, 854
Bso31I GGTCTC 2 cut(s) 48, 406
BsoBI CYCGRG 2 cut(s) 358, 455
Bsp1286I GDGCHC 2 cut(s) 107, 359
Bsp143I GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
BspANI GGCC 8 cut(s) 70, 95, 296, 377, 581, 646, 662, 854
BspCNI CTCAG 2 cut(s) 175, 784
BspLI GGNNCC 4 cut(s) 43, 408, 505, 699
BspMAI CTGCAG 1 cut(s) 248
BspPI GGATC 1 cut(s) 768
BspT107I GGYRCC 1 cut(s) 41
BspTNI GGTCTC 2 cut(s) 48, 406
BsrFI RCCGGY 5 cut(s) 292, 658, 662, 850, 854
BsrI ACTGG 4 cut(s) 203, 691, 908, 939
BssAI RCCGGY 5 cut(s) 292, 658, 662, 850, 854
BssECI CCNNGG 3 cut(s) 107, 423, 528
BssMI GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
BssNI GRCGYC 2 cut(s) 42, 213
BssSI CACGAG 1 cut(s) 565
BssT1I CCWWGG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 565
Bst2UI CCWGG 2 cut(s) 92, 722
Bst4CI ACNGT 1 cut(s) 889
BstACI GRCGYC 2 cut(s) 42, 213
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 5 cut(s) 294, 323, 334, 660, 852
BstDEI CTNAG 2 cut(s) 162, 771
BstDSI CCRYGG 1 cut(s) 528
BstH2I RGCGCY 2 cut(s) 45, 528
BstHHI GCGC 4 cut(s) 44, 327, 527, 812
BstKTI GATC 7 cut(s) 21, 576, 744, 763, 862, 877, 928
BstMAI GTCTC 4 cut(s) 48, 406, 637, 947
BstMBI GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
BstMCI CGRYCG 4 cut(s) 21, 71, 663, 855
BstNI CCWGG 2 cut(s) 92, 722
BstSCI CCNGG 2 cut(s) 90, 720
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 7 cut(s) 173, 230, 319, 322, 360, 694, 859
BstV2I GAAGAC 2 cut(s) 267, 405
BstZI CGGCCG 3 cut(s) 68, 660, 852
BsuRI GGCC 8 cut(s) 70, 95, 296, 377, 581, 646, 662, 854
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 595
BtsIMutI CAGTG 3 cut(s) 698, 792, 923
Cac8I GCNNGC 5 cut(s) 294, 323, 334, 660, 852
CaiI CAGNNNCTG 1 cut(s) 727
CfoI GCGC 4 cut(s) 44, 327, 527, 812
Cfr10I RCCGGY 5 cut(s) 292, 658, 662, 850, 854
Cfr13I GGNCC 2 cut(s) 201, 921
CseI GACGC 1 cut(s) 202
CspCI CAANNNNNGTGG 4 cut(s) 517, 552, 674, 709
CviAII CATG 1 cut(s) 511
DdeI CTNAG 2 cut(s) 162, 771
DinI GGCGCC 1 cut(s) 43
DpnI GATC 7 cut(s) 20, 575, 743, 762, 861, 876, 927
DpnII GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
DrdI GACNNNNNNGTC 1 cut(s) 629
DriI GACNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 4 cut(s) 68, 375, 660, 852
EagI CGGCCG 3 cut(s) 68, 660, 852
Eam1105I GACNNNNNGTC 1 cut(s) 13
EciI GGCGGA 2 cut(s) 66, 252
Ecl136II GAGCTC 1 cut(s) 357
EclXI CGGCCG 3 cut(s) 68, 660, 852
Eco130I CCWWGG 1 cut(s) 107
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 2 cut(s) 48, 406
Eco47I GGWCC 2 cut(s) 201, 921
Eco52I CGGCCG 3 cut(s) 68, 660, 852
Eco53kI GAGCTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 749
Eco88I CYCGRG 2 cut(s) 358, 455
EcoICRI GAGCTC 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 90, 720
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 359
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 107
Esp3I CGTCTC 1 cut(s) 637
FaeI CATG 1 cut(s) 514
FaiI YATR 2 cut(s) 512, 901
FaqI GGGAC 2 cut(s) 212, 438
FatI CATG 1 cut(s) 510
FbaI TGATCA 2 cut(s) 573, 859
FriOI GRGCYC 1 cut(s) 359
FspBI CTAG 1 cut(s) 108
GlaI GCGC 4 cut(s) 43, 326, 526, 811
GsuI CTGGAG 2 cut(s) 522, 925
HaeII RGCGCY 2 cut(s) 45, 528
HaeIII GGCC 8 cut(s) 70, 95, 296, 377, 581, 646, 662, 854
HapII CCGG 9 cut(s) 45, 58, 293, 659, 663, 737, 747, 851, 855
HgaI GACGC 1 cut(s) 202
HhaI GCGC 4 cut(s) 44, 327, 527, 812
Hin1I GRCGYC 2 cut(s) 42, 213
Hin1II CATG 1 cut(s) 514
Hin6I GCGC 4 cut(s) 42, 325, 525, 810
HinP1I GCGC 4 cut(s) 42, 325, 525, 810
HinfI GANTC 3 cut(s) 116, 458, 907
HpaII CCGG 9 cut(s) 45, 58, 293, 659, 663, 737, 747, 851, 855
HphI GGTGA 4 cut(s) 291, 601, 736, 869
Hpy166II GTNNAC 1 cut(s) 921
Hpy188I TCNGA 3 cut(s) 23, 550, 765
Hpy188III TCNNGA 4 cut(s) 367, 455, 565, 929
Hpy8I GTNNAC 1 cut(s) 921
Hpy99I CGWCG 3 cut(s) 236, 394, 596
HpyCH4III ACNGT 1 cut(s) 889
HpyCH4IV ACGT 2 cut(s) 225, 594
HpyCH4V TGCA 4 cut(s) 4, 180, 246, 682
HpyF3I CTNAG 2 cut(s) 162, 771
HpySE526I ACGT 2 cut(s) 225, 594
Hsp92I GRCGYC 2 cut(s) 42, 213
Hsp92II CATG 1 cut(s) 514
HspAI GCGC 4 cut(s) 42, 325, 525, 810
KasI GGCGCC 1 cut(s) 41
KroI GCCGGC 3 cut(s) 292, 658, 850
KroNI GCCGGC 3 cut(s) 294, 660, 852
Ksp22I TGATCA 2 cut(s) 573, 859
Kzo9I GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
LmnI GCTCC 5 cut(s) 341, 412, 503, 558, 697
Lsp1109I GCAGC 7 cut(s) 173, 230, 319, 322, 360, 694, 859
LweI GCATC 1 cut(s) 723
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 225, 594
MalI GATC 7 cut(s) 20, 575, 743, 762, 861, 876, 927
MboI GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
MboII GAAGA 9 cut(s) 25, 267, 270, 273, 276, 405, 428, 460, 742
MhlI GDGCHC 2 cut(s) 107, 359
MluCI AATT 4 cut(s) 340, 464, 487, 534
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 3 cut(s) 110, 467, 916
MroNI GCCGGC 3 cut(s) 292, 658, 850
MspI CCGG 9 cut(s) 45, 58, 293, 659, 663, 737, 747, 851, 855
MspR9I CCNGG 2 cut(s) 92, 722
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 2 cut(s) 92, 722
NaeI GCCGGC 3 cut(s) 294, 660, 852
NarI GGCGCC 1 cut(s) 42
NdeII GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
NgoMIV GCCGGC 3 cut(s) 292, 658, 850
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 4 cut(s) 43, 408, 505, 699
NmeAIII GCCGAG 2 cut(s) 383, 404
PaeR7I CTCGAG 1 cut(s) 358
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 3 cut(s) 365, 584, 627
PctI GAATGC 1 cut(s) 759
PdiI GCCGGC 3 cut(s) 294, 660, 852
Ple19I CGATCG 1 cut(s) 21
PleI GAGTC 3 cut(s) 110, 466, 915
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 3 cut(s) 110, 466, 915
Psp124BI GAGCTC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 90, 720
PspGI CCWGG 2 cut(s) 90, 720
PspN4I GGNNCC 4 cut(s) 43, 408, 505, 699
PspPI GGNCC 2 cut(s) 201, 921
PspXI VCTCGAGB 1 cut(s) 358
PstI CTGCAG 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 727
PvuI CGATCG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 359
Sau3AI GATC 7 cut(s) 18, 573, 741, 760, 859, 874, 925
Sau96I GGNCC 2 cut(s) 201, 921
SchI GAGTC 3 cut(s) 110, 467, 916
ScrFI CCNGG 2 cut(s) 92, 722
SduI GDGCHC 2 cut(s) 107, 359
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 244
SfoI GGCGCC 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 358
SinI GGWCC 2 cut(s) 201, 921
SlaI CTCGAG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 4 cut(s) 340, 464, 487, 534
SseBI AGGCCT 1 cut(s) 95
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 359
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 90, 720
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 889
TaiI ACGT 2 cut(s) 228, 597
TaqI TCGA 6 cut(s) 17, 359, 416, 492, 516, 587
TaqII GACCGA 1 cut(s) 938
TasI AATT 4 cut(s) 340, 464, 487, 534
TauI GCSGC 8 cut(s) 42, 73, 192, 195, 213, 307, 500, 703
TscAI CASTG 3 cut(s) 698, 792, 923
TseI GCWGC 7 cut(s) 186, 243, 307, 310, 348, 682, 847
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 5 cut(s) 399, 407, 545, 619, 942
TspRI CASTG 3 cut(s) 698, 792, 923
VpaK11BI GGWCC 2 cut(s) 201, 921
XapI RAATTY 2 cut(s) 464, 487
XhoI CTCGAG 1 cut(s) 358
XmaJI CCTAGG 1 cut(s) 107
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.