pycom14g17960

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0015444
Physical Location & Seq
Reverse (-)
19746867 .. 19747838
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g17960.1

Sequence Viewer

Length: 972 bp
ATGCAAGACATTCATTCAGTGAGAGGAGGAGGGAGGTTCTTCGGCGGCTCGGGAGGAGGAGACCGGCGGCTGAGGCCGCACCAGCACCCCAACCAGCAGGCTTTGAAGTGCCCGCGGTGCGATTCTCTCCACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGTAAGGCCTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCAGTCGGCGGTGGATGTCGCAAAACTAAACGCTCCAAGCCGAAAAATTCATCTTCGTCATCGCCGACATCGTCTCCCTCTCCTCCGCCGCCGCAACCGAACAGCGCCCATCAGAACAAATCCAGCTCTCATTCGAGCAGCGAGAGCTCGAGCCTCACCAACCCCACCGCCGCCGCGGAGGCCGTCTCAGCGCCGTCTTCGACCGGCTCTGCTTCCAATTTACTGACCAATATTCATAATCCGGAATCCAAATTCTTCATTTGTCAAGGCGGCGCGAACGGTGGCTTTGAGCCCGGCGTGTCGGCGGCGGCGCTGCTGGAGCAGAGTACGGAGATTAACGGAATGTCTTCCGAGATTGGGAGCTTCACGAGCTTGATCACGTCTTCCAACGACGTGCCGTTTAGTTTCAGGAACATCAACGGCTTGCCGTTTGATCAGCAAGACCAAGTTGGTAATCATCATCACAATCAAGTTCATCAAAACCAATGGGGGCAGCAGAACCAGGAAGTGAAGATGCAGGAGATCAGTGGTGGATTGCTGGATCAGACGGCGCAGGTCGATCTATCAGTGTTCCAAAACAGATCCAACGGCGTCGGAGGAGGAGAATTTGGACCGTTGGATTGGCAACCGGGATCAGTTGATCAAGGTTTTTTTGATCTTCCTAACACCGTTGATCAAGCATACTGGAGTCAAAGTCAATGGGCTGATCAAGACCACCCTACTCTCTACCTCCCGTAA

Protein Analysis

324

Amino Acids

35.0

Weight (kDa)

7.7

Isoelectric Point (pI)

62.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 33 - 89 2.4e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015444)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60850
fragaria_vesca FvH4_5g13390
malus_domestica MD06G1205900.v1.1 MD14G1216800.v1.1
prunus_persica Prupe.5G210200_v2.0.a1
pyrus_communis pycom06g18370 pycom14g17960
rosa_chinensis RchiOBHm_Chr7g0183751
rosa_laevigata RLG00000005026
rosa_multiflora Rmu_sc0003610.1_g000031
rosa_rugosa Rorug06G0460000
rosa_samantha Rh7AG060700 Rh7BG060800 Rh7CG062400 Rh7DG060800
rosa_wichuraiana Rw7G005040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccII CGCG 3 cut(s) 115, 410, 509
AccIII TCCGGA 1 cut(s) 475
AclWI GGATC 3 cut(s) 783, 810, 874
AcsI RAATTY 3 cut(s) 280, 485, 839
AcyI GRCGYC 2 cut(s) 219, 825
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 242, 591
AgsI TTSAA 1 cut(s) 106
AjiI CACGTC 2 cut(s) 615, 628
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 4 cut(s) 360, 381, 597, 606
AluI AGCT 4 cut(s) 360, 381, 597, 606
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 3 cut(s) 54, 312, 424
AlwI GGATC 3 cut(s) 783, 810, 874
Ama87I CYCGRG 2 cut(s) 49, 382
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 3 cut(s) 74, 189, 414
ApeKI GCWGC 3 cut(s) 372, 547, 727
ApoI RAATTY 3 cut(s) 280, 485, 839
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
Asp700I GAANNNNTTC 1 cut(s) 580
AspLEI GCGC 5 cut(s) 341, 427, 509, 547, 787
AspS9I GGNCC 2 cut(s) 207, 845
AsuC2I CCSGG 2 cut(s) 528, 864
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 49, 382
AvaII GGWCC 2 cut(s) 207, 845
BaeGI GKGCMC 1 cut(s) 113
BanII GRGCYC 2 cut(s) 383, 528
BauI CACGAG 1 cut(s) 601
BbsI GAAGAC 3 cut(s) 423, 573, 609
Bbv12I GWGCWC 1 cut(s) 383
BbvCI CCTCAGC 1 cut(s) 71
BbvI GCAGC 3 cut(s) 384, 534, 739
BccI CCATC 1 cut(s) 351
BceAI ACGGC 7 cut(s) 401, 412, 616, 646, 670, 798, 838
BciT130I CCWGG 1 cut(s) 737
BclI TGATCA 5 cut(s) 609, 667, 874, 907, 940
BcnI CCSGG 2 cut(s) 528, 864
BcoDI GTCTC 3 cut(s) 54, 312, 424
BfoI RGCGCY 3 cut(s) 342, 428, 548
BfuAI ACCTGC 1 cut(s) 778
BglI GCCNNNNNGGC 1 cut(s) 413
Bme1390I CCNGG 3 cut(s) 528, 737, 864
Bme18I GGWCC 2 cut(s) 207, 845
BmeT110I CYCGRG 2 cut(s) 49, 382
BmgBI CACGTC 2 cut(s) 615, 628
BmgT120I GGNCC 2 cut(s) 207, 845
BmrFI CCNGG 3 cut(s) 528, 737, 864
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 738
BmuI ACTGGG 1 cut(s) 230
BpiI GAAGAC 3 cut(s) 423, 573, 609
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpmI CTGGAG 2 cut(s) 572, 940
Bpu10I CCTNAGC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 528, 864
BsaHI GRCGYC 2 cut(s) 219, 825
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 113, 408
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 6 cut(s) 149, 179, 292, 322, 913, 943
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 591
Bse118I RCCGGY 2 cut(s) 63, 437
Bse1I ACTGG 3 cut(s) 209, 236, 923
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 113, 408
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 242, 591
BseMII CTCAG 2 cut(s) 62, 435
BseNI ACTGG 3 cut(s) 209, 236, 923
BseRI GAGGAG 7 cut(s) 39, 42, 69, 72, 306, 846, 849
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 3 cut(s) 384, 534, 739
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 3 cut(s) 115, 410, 509
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 3 cut(s) 76, 191, 416
BsiEI CGRYCG 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 383
BsiHKCI CYCGRG 2 cut(s) 49, 382
BsiSI CCGG 5 cut(s) 64, 438, 476, 528, 863
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 242, 591
BsmAI GTCTC 3 cut(s) 54, 312, 424
BsmBI CGTCTC 2 cut(s) 312, 424
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 76, 191, 416
Bso31I GGTCTC 1 cut(s) 54
BsoBI CYCGRG 2 cut(s) 49, 382
Bsp1286I GDGCHC 3 cut(s) 113, 383, 528
Bsp13I TCCGGA 1 cut(s) 475
BspANI GGCC 3 cut(s) 76, 191, 416
BspCNI CTCAG 2 cut(s) 63, 434
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 3 cut(s) 115, 410, 509
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 3 cut(s) 783, 810, 874
BspTNI GGTCTC 1 cut(s) 54
BsrFI RCCGGY 2 cut(s) 63, 437
BsrI ACTGG 3 cut(s) 209, 236, 923
BssAI RCCGGY 2 cut(s) 63, 437
BssECI CCNNGG 2 cut(s) 113, 408
BssNI GRCGYC 2 cut(s) 219, 825
BssSI CACGAG 1 cut(s) 601
Bst2BI CACGAG 1 cut(s) 601
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 3 cut(s) 515, 849, 904
BstACI GRCGYC 2 cut(s) 219, 825
BstC8I GCNNGC 4 cut(s) 99, 113, 193, 659
BstDEI CTNAG 2 cut(s) 71, 421
BstDSI CCRYGG 2 cut(s) 113, 408
BstF5I GGATG 1 cut(s) 254
BstFNI CGCG 3 cut(s) 115, 410, 509
BstH2I RGCGCY 3 cut(s) 342, 428, 548
BstHHI GCGC 5 cut(s) 341, 427, 509, 547, 787
BstMAI GTCTC 3 cut(s) 54, 312, 424
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 9 cut(s) 73, 76, 82, 117, 378, 413, 422, 553, 603
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 3 cut(s) 526, 735, 862
BstSLI GKGCMC 1 cut(s) 113
BstUI CGCG 3 cut(s) 115, 410, 509
BstV1I GCAGC 3 cut(s) 384, 534, 739
BstV2I GAAGAC 3 cut(s) 423, 573, 609
BstX2I RGATCY 1 cut(s) 815
BstYI RGATCY 1 cut(s) 815
BsuRI GGCC 3 cut(s) 76, 191, 416
BtgI CCRYGG 2 cut(s) 113, 408
BtgZI GCGATG 1 cut(s) 279
BtrI CACGTC 2 cut(s) 615, 628
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 3 cut(s) 24, 766, 807
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 4 cut(s) 99, 113, 193, 659
CfoI GCGC 5 cut(s) 341, 427, 509, 547, 787
Cfr10I RCCGGY 2 cut(s) 63, 437
Cfr13I GGNCC 2 cut(s) 207, 845
Cfr42I CCGCGG 2 cut(s) 116, 411
CseI GACGC 2 cut(s) 208, 814
Csp6I GTAC 1 cut(s) 561
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 2 cut(s) 71, 421
EciI GGCGGA 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 381
Eco147I AGGCCT 1 cut(s) 191
Eco24I GRGCYC 2 cut(s) 383, 528
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 207, 845
Eco53kI GAGCTC 1 cut(s) 381
Eco88I CYCGRG 2 cut(s) 49, 382
EcoICRI GAGCTC 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 735
EcoT38I GRGCYC 2 cut(s) 383, 528
Esp3I CGTCTC 2 cut(s) 312, 424
FaiI YATR 2 cut(s) 471, 916
FaqI GGGAC 1 cut(s) 218
FauI CCCGC 2 cut(s) 120, 182
FbaI TGATCA 5 cut(s) 609, 667, 874, 907, 940
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 2 cut(s) 383, 528
GlaI GCGC 5 cut(s) 340, 426, 508, 546, 786
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 2 cut(s) 572, 940
HaeII RGCGCY 3 cut(s) 342, 428, 548
HaeIII GGCC 3 cut(s) 76, 191, 416
HapII CCGG 5 cut(s) 64, 438, 476, 528, 863
HgaI GACGC 2 cut(s) 208, 814
HhaI GCGC 5 cut(s) 341, 427, 509, 547, 787
Hin1I GRCGYC 2 cut(s) 219, 825
Hin6I GCGC 5 cut(s) 339, 425, 507, 545, 785
HinP1I GCGC 5 cut(s) 339, 425, 507, 545, 785
HinfI GANTC 3 cut(s) 122, 479, 922
HpaII CCGG 5 cut(s) 64, 438, 476, 528, 863
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 348, 586, 780, 830
Hpy188III TCNNGA 5 cut(s) 51, 476, 601, 643, 944
Hpy99I CGWCG 2 cut(s) 629, 830
HpyCH4III ACNGT 3 cut(s) 515, 849, 904
HpyCH4IV ACGT 3 cut(s) 231, 614, 627
HpyCH4V TGCA 2 cut(s) 4, 751
HpyF10VI GCNNNNNNNGC 9 cut(s) 73, 76, 82, 117, 378, 413, 422, 553, 603
HpyF3I CTNAG 2 cut(s) 71, 421
HpySE526I ACGT 3 cut(s) 231, 614, 627
Hsp92I GRCGYC 2 cut(s) 219, 825
HspAI GCGC 5 cut(s) 339, 425, 507, 545, 785
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 5 cut(s) 609, 667, 874, 907, 940
KspI CCGCGG 2 cut(s) 116, 411
LmnI GCTCC 3 cut(s) 272, 553, 594
Lsp1109I GCAGC 3 cut(s) 384, 534, 739
LweI GCATC 1 cut(s) 738
MaeII ACGT 3 cut(s) 231, 614, 627
MaeIII GTNAC 1 cut(s) 227
MboII GAAGA 8 cut(s) 31, 279, 423, 481, 573, 609, 757, 884
MflI RGATCY 1 cut(s) 815
MhlI GDGCHC 3 cut(s) 113, 383, 528
MluCI AATT 4 cut(s) 280, 451, 485, 839
MlyI GAGTC 1 cut(s) 931
MmeI TCCRAC 4 cut(s) 645, 808, 831, 843
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 580
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 115, 410
MspI CCGG 5 cut(s) 64, 438, 476, 528, 863
MspR9I CCNGG 3 cut(s) 528, 737, 864
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 3 cut(s) 115, 410, 509
MwoI GCNNNNNNNGC 9 cut(s) 73, 76, 82, 117, 378, 413, 422, 553, 603
NciI CCSGG 2 cut(s) 528, 864
PaeR7I CTCGAG 1 cut(s) 382
PceI AGGCCT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 302
PdmI GAANNNNTTC 1 cut(s) 580
PfeI GAWTC 2 cut(s) 122, 479
PflFI GACNNNGTC 1 cut(s) 304
PleI GAGTC 1 cut(s) 930
PpsI GAGTC 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 735
PspPI GGNCC 2 cut(s) 207, 845
PspXI VCTCGAGB 1 cut(s) 382
PsuI RGATCY 1 cut(s) 815
PsyI GACNNNGTC 1 cut(s) 304
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
SacI GAGCTC 1 cut(s) 383
SacII CCGCGG 2 cut(s) 116, 411
SaqAI TTAA 1 cut(s) 570
Sau96I GGNCC 2 cut(s) 207, 845
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 3 cut(s) 528, 737, 864
SduI GDGCHC 3 cut(s) 113, 383, 528
SfaNI GCATC 1 cut(s) 738
Sfr274I CTCGAG 1 cut(s) 382
Sfr303I CCGCGG 2 cut(s) 116, 411
SgrBI CCGCGG 2 cut(s) 116, 411
SinI GGWCC 2 cut(s) 207, 845
SlaI CTCGAG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 4 cut(s) 280, 451, 485, 839
SseBI AGGCCT 1 cut(s) 191
SspI AATATT 1 cut(s) 466
SstI GAGCTC 1 cut(s) 383
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 3 cut(s) 526, 735, 862
TaaI ACNGT 3 cut(s) 515, 849, 904
TaiI ACGT 3 cut(s) 234, 617, 630
TaqI TCGA 4 cut(s) 368, 383, 434, 792
TasI AATT 4 cut(s) 280, 451, 485, 839
TfiI GAWTC 2 cut(s) 122, 479
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 3 cut(s) 24, 766, 807
TseI GCWGC 3 cut(s) 372, 547, 727
TspDTI ATGAA 4 cut(s) 273, 458, 481, 698
TspGWI ACGGA 3 cut(s) 215, 578, 588
TspRI CASTG 3 cut(s) 24, 766, 807
Tth111I GACNNNGTC 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 207, 845
XapI RAATTY 3 cut(s) 280, 485, 839
XhoI CTCGAG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.