FvH4_5g14510

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8221489 .. 8227347
5859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14510.t1

Sequence Viewer

Length: 1485 bp
ATGTCTGCGGAGGCGGAGCCGTCGTCGACGGCGGGGTTCGTCAGCGACGGCCCTGATGACGTGGAAGACTACATTTCGGCTAATGAAGCAGAACCGGCGCTGCCCTGGGATATATTTAGTCATGTATTTGATCTAGTGCAGAAGGGAAACCAGGCTTTTCGAGAGAAACGATTTGAGGAGGCAATTAATTGCTACTCAAGAGCCAATAACATTAAACCATGTGACCCTGTTATTCTTGGCAACCGAACTGCTGCCTATATCAGGATCAGTAAATTCCTTAAACGCATACCCGCATCGGCTTCTGAATATAAAGCACGGACTGGATTGGATCCCACAACACATGCTGAACTTGCTTTAAAGGATGTTGAGAAGCTACTCAACGTCCGAAGTAATTCAGCAAAACCATACATGTTGAAGGCTGAAGCTCTAAGTTTGCTGGAAAAATATGAAATGGCCCGGGATGTTATATTATGTGGTCTTCAGGTCGACCCTTTTAGCAATCCTCTTCGGACGGCTCTTCAGAATTTGGAGAGACTACAAGTTCGCCTGACGGGGAAGACGAGCCATAGCCAACCAGAAAGAAAAGCAGAACGGAGTGATGATTTTGATTGTACATTATGTTTCAAGTTACTCTATGAACCTGTGACAACCCCTTGTGGACATTCTTTTTGTCGATCGTGCCTATTTCAGTCGATGGATCGAGGTAACAAATGTCCATTATGCCGAACCGTTCTATTCTTTAGTCCTAGAACATGTGCGATCAGTGTCACTCTTAATGACATTATACAAAAGAACTTCCCAGAGGAGTTTGCTGAAAGGAAGGCAGAGAATGACACGATGACAAACTTTGGTGTTGATTTGATGCCGCTCTTTGTAATGGATGTTGTCCTTCCTTTTCAGAAGTTTCCACTACATATTTTTGAGCCTCGATATAGACTTATGGTGAGGAGGATAATGGAAGGCAACCGTCGGATGGGAATGGTCATAATCGATTCTGCAACAGGTTCCATAGCTGATTATGCTTGTGAGGTGGAAATTACTGAGTGTGAACCACTTCCAGATGGGCGTTTCTATTTAGAGATTGAAAGTCGCCGAAGGTTTCGCATAATTCGATCTTGGGACCAAGATGGGTACCGAGTTGCAGAGATTGAATGGGTACAGGACATATGTCCACCGGAAGGATCTAGAGAGAGAACAGAATTGCAGGAACTGACAAATAACGCAGCAGAATATGCTCGTTTATGGATAGGACGGGGTAAAAGAGCTGCAAGTCGAGATCGAAGACGACTTGAGAAACTTCTCAGTGTAGAAGCAATGATGCCATCAGTTCAAGATCCTGAGCGCTTCAGCTTCTGGCTGGCTTCCCTTTCAAACCGACGTCCTCACGAAAGATTGGATCTCTTACGCTTGAGAGATACAAAAGAGAGAATACAACGGGGACTAATATATCTCAGAGCAGAAGAGCAAGGTTGTCAAGTGCAATGA

Protein Analysis

495

Amino Acids

56.88

Weight (kDa)

6.41

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 202 - 243 6.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 203 - 242 4.4e-08 Ring finger domain
zf-C3HC4_2 PF13923 204 - 241 7.6e-13 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 204 - 241 6.4e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 204 - 239 7.5e-07 RING-type zinc-finger
zf-RING_5 PF14634 204 - 243 2.1e-06 zinc-RING finger domain
zf-C3HC4_4 PF15227 204 - 241 2.2e-06 zinc finger of C3HC4-type, RING
LON_substr_bdg PF02190 288 - 484 6.1e-27 ATP-dependent protease La (LON) substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1381
Acc65I GGTACC 1 cut(s) 1131
AccB1I GGYRCC 1 cut(s) 1131
AccBSI CCGCTC 1 cut(s) 868
AccI GTMKAC 2 cut(s) 26, 486
AciI CCGC 5 cut(s) 8, 14, 32, 291, 866
AclWI GGATC 7 cut(s) 272, 323, 336, 705, 1189, 1328, 1404
AcsI RAATTY 2 cut(s) 272, 523
AcuI CTGAAG 4 cut(s) 441, 464, 503, 1330
AcyI GRCGYC 1 cut(s) 1378
AfaI GTAC 3 cut(s) 613, 1133, 1158
AfeI AGCGCT 1 cut(s) 1343
AfiI CCNNNNNNNGG 3 cut(s) 261, 973, 1178
AflIII ACRYGT 2 cut(s) 408, 752
AgsI TTSAA 6 cut(s) 415, 625, 1085, 1151, 1331, 1371
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 104, 150
AluBI AGCT 5 cut(s) 373, 425, 1013, 1265, 1350
AluI AGCT 5 cut(s) 373, 425, 1013, 1265, 1350
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 7 cut(s) 272, 323, 336, 705, 1189, 1328, 1404
AlwNI CAGNNNCTG 2 cut(s) 1210, 1353
Ama87I CYCGRG 1 cut(s) 456
Aor51HI AGCGCT 1 cut(s) 1343
AoxI GGCC 2 cut(s) 49, 453
ApeKI GCWGC 4 cut(s) 100, 251, 1223, 1265
ApoI RAATTY 2 cut(s) 272, 523
ArsI GACNNNNNNTTYG 4 cut(s) 525, 557, 651, 683
AseI ATTAAT 1 cut(s) 186
Asp700I GAANNNNTTC 2 cut(s) 391, 1053
Asp718I GGTACC 1 cut(s) 1131
AspLEI GCGC 2 cut(s) 100, 1344
AspS9I GGNCC 3 cut(s) 50, 454, 1120
AsuC2I CCSGG 2 cut(s) 457, 458
AsuHPI GGTGA 1 cut(s) 955
AvaI CYCGRG 1 cut(s) 456
AvaII GGWCC 1 cut(s) 1120
BamHI GGATCC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 1131
BbsI GAAGAC 4 cut(s) 72, 470, 563, 1288
BbvI GCAGC 4 cut(s) 87, 238, 1235, 1252
BccI CCATC 5 cut(s) 688, 967, 1055, 1121, 1330
BceAI ACGGC 4 cut(s) 4, 45, 64, 528
BciT130I CCWGG 2 cut(s) 106, 152
BcnI CCSGG 2 cut(s) 457, 458
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 3 cut(s) 134, 747, 1185
BfoI RGCGCY 2 cut(s) 101, 1345
BisI GCNGC 5 cut(s) 101, 252, 866, 1224, 1266
BlsI GCNGC 5 cut(s) 102, 253, 867, 1225, 1267
Bme1390I CCNGG 4 cut(s) 106, 152, 457, 458
Bme18I GGWCC 1 cut(s) 1120
BmeT110I CYCGRG 1 cut(s) 456
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 50, 454, 1120
BmiI GGNNCC 5 cut(s) 18, 330, 1006, 1121, 1133
BmrFI CCNGG 4 cut(s) 106, 152, 457, 458
BmsI GCATC 3 cut(s) 302, 852, 1308
BoxI GACNNNNGTC 1 cut(s) 1167
BpiI GAAGAC 4 cut(s) 72, 470, 563, 1288
Bpu10I CCTNAGC 1 cut(s) 1338
BpuEI CTTGAG 3 cut(s) 181, 1310, 1429
BpuMI CCSGG 2 cut(s) 457, 458
Bsa29I ATCGAT 1 cut(s) 990
BsaHI GRCGYC 1 cut(s) 1378
BsaJI CCNNGG 3 cut(s) 104, 105, 456
BsaWI WCCGGW 1 cut(s) 1174
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 973, 1178
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 1320
BseBI CCWGG 2 cut(s) 106, 152
BseCI ATCGAT 1 cut(s) 990
BseDI CCNNGG 3 cut(s) 104, 105, 456
BseGI GGATG 4 cut(s) 367, 466, 886, 978
BseLI CCNNNNNNNGG 3 cut(s) 261, 973, 1178
BseMI GCAATG 1 cut(s) 1320
BseMII CTCAG 4 cut(s) 1032, 1315, 1329, 1465
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 3 cut(s) 191, 818, 961
BseXI GCAGC 4 cut(s) 87, 238, 1235, 1252
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 677
BshFI GGCC 2 cut(s) 51, 455
BshNI GGYRCC 1 cut(s) 1131
BshVI ATCGAT 1 cut(s) 990
BsiEI CGRYCG 1 cut(s) 677
BsiHKCI CYCGRG 1 cut(s) 456
BsiSI CCGG 3 cut(s) 95, 457, 1175
BslFI GGGAC 2 cut(s) 1133, 1452
BslI CCNNNNNNNGG 3 cut(s) 261, 973, 1178
BsmAI GTCTC 1 cut(s) 526
BsmFI GGGAC 2 cut(s) 1133, 1452
BsnI GGCC 2 cut(s) 51, 455
BsoBI CYCGRG 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 611
BspACI CCGC 5 cut(s) 8, 14, 32, 291, 866
BspANI GGCC 2 cut(s) 51, 455
BspCNI CTCAG 4 cut(s) 1033, 1314, 1330, 1464
BspDI ATCGAT 1 cut(s) 990
BspLI GGNNCC 5 cut(s) 18, 330, 1006, 1121, 1133
BspPI GGATC 7 cut(s) 272, 323, 336, 705, 1189, 1328, 1404
BspQI GCTCTTC 2 cut(s) 522, 1455
BspT107I GGYRCC 1 cut(s) 1131
BsrBI CCGCTC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 1320
BsrFI RCCGGY 1 cut(s) 94
BsrGI TGTACA 1 cut(s) 611
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 104, 105, 456
BssNI GRCGYC 1 cut(s) 1378
Bst2UI CCWGG 2 cut(s) 106, 152
Bst4CI ACNGT 2 cut(s) 730, 968
Bst6I CTCTTC 3 cut(s) 510, 522, 1455
BstACI GRCGYC 1 cut(s) 1378
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstAUI TGTACA 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 1359
BstDEI CTNAG 5 cut(s) 428, 1041, 1301, 1338, 1451
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 4 cut(s) 367, 466, 886, 978
BstH2I RGCGCY 2 cut(s) 101, 1345
BstHHI GCGC 2 cut(s) 100, 1344
BstMAI GTCTC 1 cut(s) 526
BstMCI CGRYCG 1 cut(s) 677
BstMWI GCNNNNNNNGC 5 cut(s) 86, 95, 350, 1019, 1232
BstNI CCWGG 2 cut(s) 106, 152
BstNSI RCATGY 3 cut(s) 344, 412, 756
BstPAI GACNNNNGTC 1 cut(s) 1167
BstSCI CCNGG 4 cut(s) 104, 150, 455, 456
BstV1I GCAGC 4 cut(s) 87, 238, 1235, 1252
BstV2I GAAGAC 4 cut(s) 72, 470, 563, 1288
BstX2I RGATCY 4 cut(s) 328, 1181, 1333, 1396
BstYI RGATCY 4 cut(s) 328, 1181, 1333, 1396
Bsu15I ATCGAT 1 cut(s) 990
BsuRI GGCC 2 cut(s) 51, 455
BsuTUI ATCGAT 1 cut(s) 990
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 4 cut(s) 367, 466, 886, 978
BtsIMutI CAGTG 2 cut(s) 769, 1309
Cac8I GCNNGC 1 cut(s) 1359
CaiI CAGNNNCTG 2 cut(s) 1210, 1353
CfoI GCGC 2 cut(s) 100, 1344
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 50, 454, 1120
Cfr9I CCCGGG 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 990
Csp6I GTAC 3 cut(s) 612, 1132, 1157
CviAII CATG 5 cut(s) 122, 219, 341, 409, 753
CviQI GTAC 3 cut(s) 612, 1132, 1157
DdeI CTNAG 5 cut(s) 428, 1041, 1301, 1338, 1451
DraI TTTAAA 1 cut(s) 357
Eam1104I CTCTTC 3 cut(s) 510, 522, 1455
EarI CTCTTC 3 cut(s) 510, 522, 1455
EciI GGCGGA 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 1120
Eco47III AGCGCT 1 cut(s) 1343
Eco57I CTGAAG 4 cut(s) 441, 464, 503, 1330
Eco88I CYCGRG 1 cut(s) 456
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 104, 150
FaeI CATG 5 cut(s) 125, 222, 344, 412, 756
FaqI GGGAC 2 cut(s) 1133, 1452
FatI CATG 5 cut(s) 121, 218, 340, 408, 752
FauI CCCGC 2 cut(s) 25, 298
FauNDI CATATG 1 cut(s) 1166
FblI GTMKAC 2 cut(s) 26, 486
Fnu4HI GCNGC 5 cut(s) 101, 252, 866, 1224, 1266
FokI GGATG 4 cut(s) 374, 473, 893, 985
Fsp4HI GCNGC 5 cut(s) 101, 252, 866, 1224, 1266
FspBI CTAG 3 cut(s) 134, 747, 1185
GlaI GCGC 2 cut(s) 99, 1343
GluI GCNGC 5 cut(s) 101, 252, 866, 1224, 1266
HaeII RGCGCY 2 cut(s) 101, 1345
HaeIII GGCC 2 cut(s) 51, 455
HapII CCGG 3 cut(s) 95, 457, 1175
HhaI GCGC 2 cut(s) 100, 1344
Hin1I GRCGYC 1 cut(s) 1378
Hin1II CATG 5 cut(s) 125, 222, 344, 412, 756
Hin6I GCGC 2 cut(s) 98, 1342
HinP1I GCGC 2 cut(s) 98, 1342
HincII GTYRAC 2 cut(s) 27, 487
HindII GTYRAC 2 cut(s) 27, 487
HinfI GANTC 1 cut(s) 992
HpaII CCGG 3 cut(s) 95, 457, 1175
HphI GGTGA 1 cut(s) 955
Hpy166II GTNNAC 5 cut(s) 27, 487, 659, 1049, 1172
Hpy188I TCNGA 7 cut(s) 304, 386, 510, 522, 900, 972, 1454
Hpy188III TCNNGA 9 cut(s) 161, 198, 262, 1058, 1185, 1274, 1331, 1337, 1385
Hpy8I GTNNAC 5 cut(s) 27, 487, 659, 1049, 1172
Hpy99I CGWCG 6 cut(s) 25, 28, 31, 50, 972, 1380
HpyAV CCTTC 7 cut(s) 136, 409, 814, 899, 953, 1089, 1172
HpyCH4III ACNGT 2 cut(s) 730, 968
HpyCH4IV ACGT 3 cut(s) 60, 381, 1378
HpyCH4V TGCA 6 cut(s) 139, 998, 1142, 1204, 1268, 1480
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 95, 350, 1019, 1232
HpyF3I CTNAG 5 cut(s) 428, 1041, 1301, 1338, 1451
HpySE526I ACGT 3 cut(s) 60, 381, 1378
Hsp92I GRCGYC 1 cut(s) 1378
Hsp92II CATG 5 cut(s) 125, 222, 344, 412, 756
HspAI GCGC 2 cut(s) 98, 1342
KpnI GGTACC 1 cut(s) 1135
LguI GCTCTTC 2 cut(s) 522, 1455
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 4 cut(s) 87, 238, 1235, 1252
LweI GCATC 3 cut(s) 302, 852, 1308
MaeI CTAG 3 cut(s) 134, 747, 1185
MaeII ACGT 3 cut(s) 60, 381, 1378
MaeIII GTNAC 5 cut(s) 221, 627, 643, 704, 766
MbiI CCGCTC 1 cut(s) 868
MboII GAAGA 7 cut(s) 77, 470, 497, 509, 568, 1293, 1472
MflI RGATCY 4 cut(s) 328, 1181, 1333, 1396
MluCI AATT 8 cut(s) 183, 187, 272, 391, 523, 1035, 1107, 1199
MmeI TCCRAC 1 cut(s) 950
MroXI GAANNNNTTC 2 cut(s) 391, 1053
MseI TTAA 5 cut(s) 186, 213, 279, 356, 774
MspI CCGG 3 cut(s) 95, 457, 1175
MspR9I CCNGG 4 cut(s) 106, 152, 457, 458
MvaI CCWGG 2 cut(s) 106, 152
MwoI GCNNNNNNNGC 5 cut(s) 86, 95, 350, 1019, 1232
NciI CCSGG 2 cut(s) 457, 458
NdeI CATATG 1 cut(s) 1166
NlaIII CATG 5 cut(s) 125, 222, 344, 412, 756
NlaIV GGNNCC 5 cut(s) 18, 330, 1006, 1121, 1133
NmuCI GTSAC 3 cut(s) 221, 643, 766
NspI RCATGY 3 cut(s) 344, 412, 756
PasI CCCWGGG 1 cut(s) 105
PciI ACATGT 2 cut(s) 408, 752
PciSI GCTCTTC 2 cut(s) 522, 1455
PcsI WCGNNNNNNNCGW 3 cut(s) 166, 557, 1108
PdmI GAANNNNTTC 2 cut(s) 391, 1053
PfeI GAWTC 1 cut(s) 992
PkrI GCNGC 5 cut(s) 102, 253, 867, 1225, 1267
Ple19I CGATCG 1 cut(s) 677
PscI ACATGT 2 cut(s) 408, 752
PshAI GACNNNNGTC 1 cut(s) 1167
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 104, 150
PspGI CCWGG 2 cut(s) 104, 150
PspN4I GGNNCC 5 cut(s) 18, 330, 1006, 1121, 1133
PspPI GGNCC 3 cut(s) 50, 454, 1120
PstNI CAGNNNCTG 2 cut(s) 1210, 1353
PsuI RGATCY 4 cut(s) 328, 1181, 1333, 1396
PvuI CGATCG 1 cut(s) 677
RsaI GTAC 3 cut(s) 613, 1133, 1158
RsaNI GTAC 3 cut(s) 612, 1132, 1157
SalI GTCGAC 2 cut(s) 25, 485
SapI GCTCTTC 2 cut(s) 522, 1455
SaqAI TTAA 5 cut(s) 186, 213, 279, 356, 774
SatI GCNGC 5 cut(s) 101, 252, 866, 1224, 1266
Sau96I GGNCC 3 cut(s) 50, 454, 1120
ScrFI CCNGG 4 cut(s) 106, 152, 457, 458
SfaNI GCATC 3 cut(s) 302, 852, 1308
SgrDI CGTCGACG 1 cut(s) 25
SinI GGWCC 1 cut(s) 1120
SmaI CCCGGG 1 cut(s) 458
SmlI CTYRAG 3 cut(s) 196, 1289, 1408
SmoI CTYRAG 3 cut(s) 196, 1289, 1408
Sse9I AATT 8 cut(s) 183, 187, 272, 391, 523, 1035, 1107, 1199
SsiI CCGC 5 cut(s) 8, 14, 32, 291, 866
SspMI CTAG 3 cut(s) 134, 747, 1185
StyD4I CCNGG 4 cut(s) 104, 150, 455, 456
TaaI ACNGT 2 cut(s) 730, 968
TaiI ACGT 3 cut(s) 63, 384, 1381
TasI AATT 8 cut(s) 183, 187, 272, 391, 523, 1035, 1107, 1199
TatI WGTACW 1 cut(s) 611
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 1 cut(s) 992
Tru1I TTAA 5 cut(s) 186, 213, 279, 356, 774
Tru9I TTAA 5 cut(s) 186, 213, 279, 356, 774
TscAI CASTG 2 cut(s) 769, 1309
TseFI GTSAC 3 cut(s) 221, 643, 766
TseI GCWGC 4 cut(s) 100, 251, 1223, 1265
Tsp45I GTSAC 3 cut(s) 221, 643, 766
TspDTI ATGAA 3 cut(s) 99, 462, 651
TspGWI ACGGA 2 cut(s) 331, 607
TspMI CCCGGG 1 cut(s) 456
TspRI CASTG 2 cut(s) 769, 1309
VpaK11BI GGWCC 1 cut(s) 1120
VspI ATTAAT 1 cut(s) 186
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 2 cut(s) 272, 523
XbaI TCTAGA 1 cut(s) 1184
XceI RCATGY 3 cut(s) 344, 412, 756
XmaI CCCGGG 1 cut(s) 456
XmiI GTMKAC 2 cut(s) 26, 486
XmnI GAANNNNTTC 2 cut(s) 391, 1053
XspI CTAG 3 cut(s) 134, 747, 1185
ZraI GACGTC 1 cut(s) 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.