Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009065

Physical Location & Seq

Genomic Coordinates Reverse (-)

19077830 .. 19083464

Gene Structure 5635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16990.18

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGTCCGGCGAGGCTGAGCCGTCTTCGCCCGGGTTCGGCACCGACGTGCCTGCCGACGTCGAGGACTACATTTCGGCTAAAGAAGGAGAGCCATCATTGCCCTGGGACATATTTGGTCACATTTTTGATCTTGTGAAGAATGGAAATCAAGCATTTCGAGAGAATCGCTTTGAGGAGGCAATTAATTGTTACTCCAGAGCCAATAACATTAGACCGTGTGATCCAATTATTCTTGCCAACCGAAGTGCTGCTTATATCAGGATCAGTAAATTCCTTAAACGCATACCAGCATCGGCTTCTGAATATAGAGCACGGACTGGATTGGATCCCACAACACATGCTGAACTTGCGTTAAAGGATGTGGAGAAGTTAGTCAACCTTCGAAGTAATTCAGAAAAGGCATACATATTAAAGGCCGAAACTCTCATTTTGTTGGAGAAATATGAAATGGCCCGTGATGTTATTCTTTCGGGTCTTCAGGTTAATCCTTTTAGCAATTATCTCCAGGAATCTTTCCAGAATTTAGAGAGAATACAAGCTAATTTCACAGGGAGGAGAAGCCATAGAAAACCAGAACGCAGTGATGACTTTGATTGCACACTATGCTTAAAATTACTATATGAACCTGTCACAACTCCTTGTGGGCATTCCTTTTGTCGTTCATGCCTATTTCAGTCAATCGATCGAGGTAACAAATGTCCTTTGTGCCGAACAGTTCTTTTCATTAGTCCTAGAACATGTGCAATCAGTGTTACACTCAATGACATTATACAAAAGAACTTCCCAGAAGAATTTTCCGAAAGGAAGTTAGAGAATGACCAAATGACAAACTTTGGTGTTGATTTGATGCCACTCTTTGTAATGGATGTTGTCCTCCCATTCCAGAAGATTTCACTGCACATTTTTGAACCGCGGTATAGACTTATGGTAAGGAGGATAATGGAAGGCAATCGTCGGATGGGAATGGTTATCATTGATTCTTCAACAGGTTCAATAGCTGATTTTGCTTGCGAAGTGGAAATTACCGAGTGTGAGCCACTTCCAGATGGGCGTTTTTATTTAGAGATTGAAAGTCGGCGAAGGTTTCGCATAATTCGATCTTGGGACCAAGATGGGTACCGTGTTGCAGAGATTGAATGGGTACAAGACATTCTACCAGAAGGGTCTGAAGCGAGAGAAGAATTGCAGGAATTGGCAAGAAATGCAGCAGAATATGCTCGATCATGGATAGCGCGGGGTAAAAGAGCAGCACGTCAAGATCGAAGACGACTGGAGAAACTTCTCGGTGTGGAAGCGATGATGCCTTCACTACAAGATCCTGAACGCTTCAGCTTTTGGCTTGCCTCCTTATCAAACCGGCGTCCTCATGAAAGGTTGGATCTTCTACGCTTGCGAGATACAAAAGAGAGAATACACCGGGGACGGATGTATCTTCAAGCGGAAGGGCAGGGTTGTCAAGTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Malectin_like Pkinase_Tyr zf-C3HC4_2

Protein Analysis

489

Amino Acids

56.41

Weight (kDa)

6.46

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18660 AT1G18660 AT1G18660 AT1G18660
fragaria_vesca	FvH4_5g14510 FvH4_5g14510 FvH4_5g14510
malus_domestica	MD06G1197800.v1.1 MD14G1205300.v1.1
prunus_persica	Prupe.5G198700_v2.0.a1 Prupe.5G198700_v2.0.a1
pyrus_communis	pycom06g17480 pycom14g16990
rosa_chinensis	RchiOBHm_Chr7g0182141
rosa_laevigata	RLG00000005147
rosa_multiflora	Rmu_co8332863.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271470
rosa_samantha	Rh7AG048700 Rh7BG048600 Rh7CG050000 Rh7DG047900
rosa_wichuraiana	Rw0G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
Acc65I	GGTACC	1 cut(s)	1116
AccB1I	GGYRCC	2 cut(s)	38, 1116
AccII	CGCG	2 cut(s)	913, 1234
AciI	CCGC	4 cut(s)	911, 913, 1234, 1439
AclWI	GGATC	6 cut(s)	215, 269, 320, 333, 1310, 1386
AcsI	RAATTY	3 cut(s)	269, 520, 791
AcuI	CTGAAG	3 cut(s)	461, 1188, 1312
AcyI	GRCGYC	2 cut(s)	57, 1360
AfaI	GTAC	2 cut(s)	1118, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	908, 984, 993, 1070, 1136, 1436
AjiI	CACGTC	2 cut(s)	46, 1253
AjnI	CCWGG	2 cut(s)	101, 504
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	539, 998, 1332
AluI	AGCT	3 cut(s)	539, 998, 1332
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	6 cut(s)	215, 269, 320, 333, 1310, 1386
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	414, 450
ApeKI	GCWGC	3 cut(s)	248, 1205, 1247
ApoI	RAATTY	3 cut(s)	269, 520, 791
AseI	ATTAAT	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	388
Asp718I	GGTACC	1 cut(s)	1116
AspLEI	GCGC	1 cut(s)	1234
AspS9I	GGNCC	2 cut(s)	451, 1105
AsuC2I	CCSGG	3 cut(s)	30, 31, 1418
AsuII	TTCGAA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	1105
BaeI	ACNNNNGTAYC	2 cut(s)	1412, 1445
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	38, 1116
BbsI	GAAGAC	3 cut(s)	15, 467, 1270
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	235, 1217, 1259
BccI	CCATC	4 cut(s)	100, 952, 1040, 1106
BceAI	ACGGC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	103, 506
BcnI	CCSGG	3 cut(s)	30, 31, 1418
BfaI	CTAG	1 cut(s)	732
BisI	GCNGC	3 cut(s)	249, 1206, 1248
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	250, 1207, 1249
Bme1390I	CCNGG	5 cut(s)	30, 31, 103, 506, 1418
Bme18I	GGWCC	1 cut(s)	1105
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	2 cut(s)	46, 1253
BmgT120I	GGNCC	2 cut(s)	451, 1105
BmiI	GGNNCC	4 cut(s)	40, 327, 1106, 1118
BmrFI	CCNGG	5 cut(s)	30, 31, 103, 506, 1418
BmsI	GCATC	3 cut(s)	299, 837, 1290
BpiI	GAAGAC	3 cut(s)	15, 467, 1270
BpmI	CTGGAG	3 cut(s)	178, 488, 1292
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	382
BpuMI	CCSGG	3 cut(s)	30, 31, 1418
Bsa29I	ATCGAT	1 cut(s)	681
BsaHI	GRCGYC	2 cut(s)	57, 1360
BsaJI	CCNNGG	5 cut(s)	29, 101, 102, 911, 1417
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	1356
Bse1I	ACTGG	2 cut(s)	322, 1275
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	103, 506
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	5 cut(s)	29, 101, 102, 911, 1417
BseGI	GGATG	4 cut(s)	364, 871, 963, 1431
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	322, 1275
BseRI	GAGGAG	2 cut(s)	188, 568
BseXI	GCAGC	3 cut(s)	235, 1217, 1259
BsgI	GTGCAG	1 cut(s)	881
Bsh1236I	CGCG	2 cut(s)	913, 1234
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	2 cut(s)	416, 452
BshNI	GGYRCC	2 cut(s)	38, 1116
BshVI	ATCGAT	1 cut(s)	681
BsiEI	CGRYCG	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	6, 30, 1357, 1417
BslFI	GGGAC	3 cut(s)	119, 1118, 1434
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmFI	GGGAC	3 cut(s)	119, 1118, 1434
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	416, 452
BsoBI	CYCGRG	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	4 cut(s)	911, 913, 1234, 1439
BspANI	GGCC	2 cut(s)	416, 452
BspCNI	CTCAG	1 cut(s)	7
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	2 cut(s)	913, 1234
BspHI	TCATGA	1 cut(s)	1366
BspLI	GGNNCC	4 cut(s)	40, 327, 1106, 1118
BspPI	GGATC	6 cut(s)	215, 269, 320, 333, 1310, 1386
BspT104I	TTCGAA	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	38, 1116
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	1356
BsrI	ACTGG	2 cut(s)	322, 1275
BssAI	RCCGGY	1 cut(s)	1356
BssECI	CCNNGG	5 cut(s)	29, 101, 102, 911, 1417
BssNI	GRCGYC	2 cut(s)	57, 1360
Bst2UI	CCWGG	2 cut(s)	103, 506
Bst4CI	ACNGT	3 cut(s)	216, 715, 1121
BstACI	GRCGYC	2 cut(s)	57, 1360
BstAPI	GCANNNNNTGC	3 cut(s)	603, 1202, 1214
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	4 cut(s)	51, 1009, 1341, 1391
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	364, 871, 963, 1431
BstFNI	CGCG	2 cut(s)	913, 1234
BstHHI	GCGC	1 cut(s)	1234
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 97, 347, 603, 1004, 1202, 1214
BstNI	CCWGG	2 cut(s)	103, 506
BstNSI	RCATGY	2 cut(s)	341, 741
BstSCI	CCNGG	5 cut(s)	28, 29, 101, 504, 1416
BstUI	CGCG	2 cut(s)	913, 1234
BstV1I	GCAGC	3 cut(s)	235, 1217, 1259
BstV2I	GAAGAC	3 cut(s)	15, 467, 1270
BstX2I	RGATCY	3 cut(s)	325, 1315, 1378
BstYI	RGATCY	3 cut(s)	325, 1315, 1378
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	416, 452
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	911
BtgZI	GCGATG	1 cut(s)	1310
BtrI	CACGTC	2 cut(s)	46, 1253
BtsCI	GGATG	4 cut(s)	364, 871, 963, 1431
BtsI	GCAGTG	2 cut(s)	586, 893
BtsIMutI	CAGTG	3 cut(s)	586, 754, 893
Cac8I	GCNNGC	4 cut(s)	51, 1009, 1341, 1391
CciI	TCATGA	1 cut(s)	1366
CfoI	GCGC	1 cut(s)	1234
Cfr10I	RCCGGY	1 cut(s)	1356
Cfr13I	GGNCC	2 cut(s)	451, 1105
Cfr42I	CCGCGG	1 cut(s)	914
Cfr9I	CCCGGG	1 cut(s)	29
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	1349
Csp6I	GTAC	2 cut(s)	1117, 1142
CviAII	CATG	5 cut(s)	338, 663, 738, 1224, 1367
CviQI	GTAC	2 cut(s)	1117, 1142
DdeI	CTNAG	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	1105
Eco57I	CTGAAG	3 cut(s)	461, 1188, 1312
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	101, 504
FaeI	CATG	5 cut(s)	341, 666, 741, 1227, 1370
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FaqI	GGGAC	3 cut(s)	119, 1118, 1434
FatI	CATG	5 cut(s)	337, 662, 737, 1223, 1366
FauI	CCCGC	1 cut(s)	1227
Fnu4HI	GCNGC	3 cut(s)	249, 1206, 1248
FokI	GGATG	4 cut(s)	371, 878, 970, 1438
Fsp4HI	GCNGC	3 cut(s)	249, 1206, 1248
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	1 cut(s)	1233
GluI	GCNGC	3 cut(s)	249, 1206, 1248
GsuI	CTGGAG	3 cut(s)	178, 488, 1292
HaeIII	GGCC	2 cut(s)	416, 452
HapII	CCGG	4 cut(s)	6, 30, 1357, 1417
HgaI	GACGC	1 cut(s)	1349
HhaI	GCGC	1 cut(s)	1234
Hin1I	GRCGYC	2 cut(s)	57, 1360
Hin1II	CATG	5 cut(s)	341, 666, 741, 1227, 1370
Hin6I	GCGC	1 cut(s)	1232
HinP1I	GCGC	1 cut(s)	1232
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	163, 509, 977
HpaII	CCGG	4 cut(s)	6, 30, 1357, 1417
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	5 cut(s)	301, 394, 799, 957, 1168
Hpy188III	TCNNGA	9 cut(s)	158, 195, 259, 517, 883, 1043, 1256, 1319, 1367
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	4 cut(s)	47, 59, 62, 957
HpyAV	CCTTC	7 cut(s)	77, 389, 938, 1074, 1154, 1314, 1436
HpyCH4III	ACNGT	3 cut(s)	216, 715, 1121
HpyCH4IV	ACGT	3 cut(s)	45, 57, 1252
HpyCH4V	TGCA	7 cut(s)	597, 743, 898, 1127, 1186, 1205, 1462
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 97, 347, 603, 1004, 1202, 1214
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	3 cut(s)	45, 57, 1252
Hsp92I	GRCGYC	2 cut(s)	57, 1360
Hsp92II	CATG	5 cut(s)	341, 666, 741, 1227, 1370
HspAI	GCGC	1 cut(s)	1232
KpnI	GGTACC	1 cut(s)	1120
KspI	CCGCGG	1 cut(s)	914
Lsp1109I	GCAGC	3 cut(s)	235, 1217, 1259
LweI	GCATC	3 cut(s)	299, 837, 1290
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	3 cut(s)	45, 57, 1252
MaeIII	GTNAC	5 cut(s)	116, 188, 628, 689, 751
MflI	RGATCY	3 cut(s)	325, 1315, 1378
MhlI	GDGCHC	1 cut(s)	313
MmeI	TCCRAC	3 cut(s)	414, 935, 1356
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	6 cut(s)	183, 276, 353, 410, 483, 608
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	913
MspI	CCGG	4 cut(s)	6, 30, 1357, 1417
MspR9I	CCNGG	5 cut(s)	30, 31, 103, 506, 1418
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	103, 506
MvnI	CGCG	2 cut(s)	913, 1234
MwoI	GCNNNNNNNGC	7 cut(s)	25, 97, 347, 603, 1004, 1202, 1214
NciI	CCSGG	3 cut(s)	30, 31, 1418
NlaIII	CATG	5 cut(s)	341, 666, 741, 1227, 1370
NlaIV	GGNNCC	4 cut(s)	40, 327, 1106, 1118
NmuCI	GTSAC	2 cut(s)	116, 628
NspI	RCATGY	2 cut(s)	341, 741
NspV	TTCGAA	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	1366
PasI	CCCWGGG	1 cut(s)	102
PciI	ACATGT	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 51, 1093, 1258
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	163, 509, 977
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	3 cut(s)	250, 1207, 1249
Ple19I	CGATCG	1 cut(s)	685
PscI	ACATGT	1 cut(s)	737
PshBI	ATTAAT	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	101, 504
PspGI	CCWGG	2 cut(s)	101, 504
PspN4I	GGNNCC	4 cut(s)	40, 327, 1106, 1118
PspPI	GGNCC	2 cut(s)	451, 1105
PsuI	RGATCY	3 cut(s)	325, 1315, 1378
PvuI	CGATCG	1 cut(s)	685
RsaI	GTAC	2 cut(s)	1118, 1143
RsaNI	GTAC	2 cut(s)	1117, 1142
RseI	CAYNNNNRTG	1 cut(s)	44
SacII	CCGCGG	1 cut(s)	914
SaqAI	TTAA	6 cut(s)	183, 276, 353, 410, 483, 608
SatI	GCNGC	3 cut(s)	249, 1206, 1248
Sau96I	GGNCC	2 cut(s)	451, 1105
ScrFI	CCNGG	5 cut(s)	30, 31, 103, 506, 1418
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	3 cut(s)	299, 837, 1290
Sfr303I	CCGCGG	1 cut(s)	914
SfuI	TTCGAA	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	914
SinI	GGWCC	1 cut(s)	1105
SmaI	CCCGGG	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	44
SsiI	CCGC	4 cut(s)	911, 913, 1234, 1439
SspMI	CTAG	1 cut(s)	732
StyD4I	CCNGG	5 cut(s)	28, 29, 101, 504, 1416
TaaI	ACNGT	3 cut(s)	216, 715, 1121
TaiI	ACGT	3 cut(s)	48, 60, 1255
TaqI	TCGA	8 cut(s)	60, 157, 382, 681, 685, 1096, 1219, 1261
TfiI	GAWTC	3 cut(s)	163, 509, 977
Tru1I	TTAA	6 cut(s)	183, 276, 353, 410, 483, 608
Tru9I	TTAA	6 cut(s)	183, 276, 353, 410, 483, 608
TscAI	CASTG	3 cut(s)	586, 754, 900
TseFI	GTSAC	2 cut(s)	116, 628
TseI	GCWGC	3 cut(s)	248, 1205, 1247
Tsp45I	GTSAC	2 cut(s)	116, 628
TspDTI	ATGAA	5 cut(s)	459, 636, 651, 712, 1383
TspGWI	ACGGA	2 cut(s)	328, 1438
TspMI	CCCGGG	1 cut(s)	29
TspRI	CASTG	3 cut(s)	586, 754, 900
VpaK11BI	GGWCC	1 cut(s)	1105
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	3 cut(s)	269, 520, 791
XceI	RCATGY	2 cut(s)	341, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmaI	CCCGGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	1 cut(s)	732
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.