Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009065

Physical Location & Seq

Genomic Coordinates Reverse (-)

21425735 .. 21431087

Gene Structure 5353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17480.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGTCCAGCGAGGCCGAGCCGTCGCCGTCCGGGTTCGGCACCGACGTGCCTAGCAACGTCGAGGACTACATTTCGGCGAATGAAGGAGAGCCATCATTGCCCTGGGACATTTTTGGTCACGTTTTTGACCTTGTGAAGAATGGAAATCAGGCATTTAGAGAGAATCGCTTTGAGGAGGCAATTAATTGTTACTCCAGAGCCAATAACATTAAACCATGTGATCCAATTATTCTTGCCAACCGATGTGCTGCTTATATCAGGATCAGTAAATTCCTTAAACGCATACCGGCATCAGCTTCTGAATATAGAGCACGGACTGGATTGGATCCCACAACACATGCTGAACTTGCGTTAAAGGATGCAGAGAAGTTAATCAACCTTCGAAGTAATTCAGAAAAGGCGTACATATTAAAGGCCGAAGCTCTCATTTTGTTGGAGAAATATGAAATGGCCCGTGATGTTATTCTTTCGGGACTTCAGGTTAATCCTTTTAGCAATTATCTTCAGGAATCTTTCCAGAATTTAGAGAGAATACAATCTAATTTCACTGGGAGCAGAAGCCATAGAAAAGCAGAACGCAGTGATGACTTTGATTGCACACTATGCTTAAAATTACCATACGAACCTGTTACAACTCCTTGTGGGCATTCCTTTTGTCGTTCATGCCTATTTCAGTCAATGGATCGAGGTAACAAATGTCCCTTGTGCCGCACAGTTCTTTTCATTAGTCCTAGAACATGCGCGATCAGTGTTACACTCAATGACATTATACAGAAGAACTTCCCAGAAGAATTTTCCAAAAGGAAGTTAGAGAATGACCAAATGACAAACTTTGGTGTTGATTTGATGCCACTCTTTGTAATGGATGTTGTCCTCCCATTCCAGAAGTTTCCGCTGCACATTTTTGAACCACGGTATAGACTTATGGTAAGGAGGATAATGGAAGGCAATCGTCGGATGGGAATGGTTATCGTTGATTCATCAACAGGTTCAATAGCAGAATTTGCTTGCGAAGTGGAAATTACCGAGTGTGAGCCACTTCCGGATGGGCGTTTATATTTAGAGATTGAAAGTCGGCGAAGGTTTCGCATAATTCGATCTTGGGACCAAGATGGGTACCGTGTTGCAGAGATTGAATGGGTACAAGACACTCCACCAGAAGGACGTGAAGCGAGAGAAGAATTGCAGGAATTGGCAAGTAATGCAGCAGAGGATGCTCGATCATGGATAGCGCGGGGTAAGAGAGCAGCACGTCAAGATCGAAGACGACTTGAGAGACTTCTCGGTGTGGAAGCGATGATGCCTTCACTACAAGATCCTGAACGCTTCAGCTTCTGGCTTGCCTCCTTATCAAACCGGCGTCCTCATGAAAGGTTGGATCTTCTACGCTTGCAAGATACAAAAGAGAGAATACACCGGGGACTGATATATCTTCAAGCGGAAGAGCAGGGTTGTCAAGTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Malectin_like Pkinase_Tyr zf-C3HC4_2

Protein Analysis

489

Amino Acids

56.24

Weight (kDa)

5.98

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18660 AT1G18660 AT1G18660 AT1G18660
fragaria_vesca	FvH4_5g14510 FvH4_5g14510 FvH4_5g14510
malus_domestica	MD06G1197800.v1.1 MD14G1205300.v1.1
prunus_persica	Prupe.5G198700_v2.0.a1 Prupe.5G198700_v2.0.a1
pyrus_communis	pycom06g17480 pycom14g16990
rosa_chinensis	RchiOBHm_Chr7g0182141
rosa_laevigata	RLG00000005147
rosa_multiflora	Rmu_co8332863.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271470
rosa_samantha	Rh7AG048700 Rh7BG048600 Rh7CG050000 Rh7DG047900
rosa_wichuraiana	Rw0G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1116
AccB1I	GGYRCC	2 cut(s)	38, 1116
AccII	CGCG	2 cut(s)	743, 1234
AccIII	TCCGGA	1 cut(s)	1042
AciI	CCGC	4 cut(s)	709, 893, 1234, 1439
AclWI	GGATC	7 cut(s)	215, 269, 320, 333, 690, 1310, 1386
AcsI	RAATTY	4 cut(s)	269, 520, 791, 1001
AcuI	CTGAAG	3 cut(s)	461, 488, 1312
AcyI	GRCGYC	1 cut(s)	1360
AfaI	GTAC	3 cut(s)	404, 1118, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	1160
AgsI	TTSAA	5 cut(s)	908, 993, 1070, 1136, 1436
AjiI	CACGTC	3 cut(s)	46, 1166, 1253
AjnI	CCWGG	1 cut(s)	101
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	296, 422, 1332
AluI	AGCT	3 cut(s)	296, 422, 1332
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	1270
AlwI	GGATC	7 cut(s)	215, 269, 320, 333, 690, 1310, 1386
AlwNI	CAGNNNCTG	2 cut(s)	299, 1335
Aor13HI	TCCGGA	1 cut(s)	1042
AoxI	GGCC	3 cut(s)	12, 414, 450
ApeKI	GCWGC	4 cut(s)	248, 895, 1205, 1247
ApoI	RAATTY	4 cut(s)	269, 520, 791, 1001
AseI	ATTAAT	1 cut(s)	183
Asp700I	GAANNNNTTC	2 cut(s)	388, 779
Asp718I	GGTACC	1 cut(s)	1116
AspLEI	GCGC	2 cut(s)	743, 1234
AspS9I	GGNCC	2 cut(s)	451, 1105
AsuC2I	CCSGG	2 cut(s)	31, 1418
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	1105
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	38, 1116
BbsI	GAAGAC	1 cut(s)	1270
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	4 cut(s)	235, 882, 1217, 1259
BccI	CCATC	4 cut(s)	100, 952, 1040, 1106
BceAI	ACGGC	2 cut(s)	4, 10
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	31, 1418
BcoDI	GTCTC	1 cut(s)	1270
BfaI	CTAG	2 cut(s)	51, 732
BisI	GCNGC	5 cut(s)	249, 709, 896, 1206, 1248
BlsI	GCNGC	5 cut(s)	250, 710, 897, 1207, 1249
Bme1390I	CCNGG	3 cut(s)	31, 103, 1418
Bme18I	GGWCC	1 cut(s)	1105
BmgBI	CACGTC	3 cut(s)	46, 1166, 1253
BmgT120I	GGNCC	2 cut(s)	451, 1105
BmiI	GGNNCC	4 cut(s)	40, 327, 1106, 1118
BmrFI	CCNGG	3 cut(s)	31, 103, 1418
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	5 cut(s)	299, 349, 837, 1204, 1290
BmuI	ACTGGG	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	1270
BpmI	CTGGAG	1 cut(s)	178
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	1292
BpuMI	CCSGG	2 cut(s)	31, 1418
BsaHI	GRCGYC	1 cut(s)	1360
BsaJI	CCNNGG	4 cut(s)	101, 102, 911, 1417
BsaWI	WCCGGW	1 cut(s)	1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	1160
Bse118I	RCCGGY	2 cut(s)	286, 1356
Bse1I	ACTGG	2 cut(s)	322, 553
Bse3DI	GCAATG	1 cut(s)	95
BseAI	TCCGGA	1 cut(s)	1042
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	4 cut(s)	101, 102, 911, 1417
BseGI	GGATG	5 cut(s)	364, 871, 963, 1051, 1219
BseLI	CCNNNNNNNGG	1 cut(s)	1160
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	322, 553
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	4 cut(s)	235, 882, 1217, 1259
BsgI	GTGCAG	1 cut(s)	881
Bsh1236I	CGCG	2 cut(s)	743, 1234
BshFI	GGCC	3 cut(s)	14, 416, 452
BshNI	GGYRCC	2 cut(s)	38, 1116
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	5 cut(s)	30, 287, 1043, 1357, 1417
BslFI	GGGAC	5 cut(s)	119, 486, 684, 1118, 1434
BslI	CCNNNNNNNGG	1 cut(s)	1160
BsmAI	GTCTC	1 cut(s)	1270
BsmFI	GGGAC	5 cut(s)	119, 486, 684, 1118, 1434
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	3 cut(s)	14, 416, 452
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	1042
BspACI	CCGC	4 cut(s)	709, 893, 1234, 1439
BspANI	GGCC	3 cut(s)	14, 416, 452
BspEI	TCCGGA	1 cut(s)	1042
BspFNI	CGCG	2 cut(s)	743, 1234
BspHI	TCATGA	1 cut(s)	1366
BspLI	GGNNCC	4 cut(s)	40, 327, 1106, 1118
BspPI	GGATC	7 cut(s)	215, 269, 320, 333, 690, 1310, 1386
BspQI	GCTCTTC	1 cut(s)	1437
BspT104I	TTCGAA	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	38, 1116
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	286, 1356
BsrI	ACTGG	2 cut(s)	322, 553
BssAI	RCCGGY	2 cut(s)	286, 1356
BssECI	CCNNGG	4 cut(s)	101, 102, 911, 1417
BssNI	GRCGYC	1 cut(s)	1360
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	715, 915, 1121
Bst6I	CTCTTC	1 cut(s)	1437
BstACI	GRCGYC	1 cut(s)	1360
BstAPI	GCANNNNNTGC	4 cut(s)	603, 1004, 1202, 1214
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	1009, 1341, 1391
BstDSI	CCRYGG	1 cut(s)	911
BstF5I	GGATG	5 cut(s)	364, 871, 963, 1051, 1219
BstFNI	CGCG	2 cut(s)	743, 1234
BstHHI	GCGC	2 cut(s)	743, 1234
BstMAI	GTCTC	1 cut(s)	1270
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 347, 603, 1004, 1202, 1214
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	2 cut(s)	341, 741
BstSCI	CCNGG	3 cut(s)	29, 101, 1416
BstUI	CGCG	2 cut(s)	743, 1234
BstV1I	GCAGC	4 cut(s)	235, 882, 1217, 1259
BstV2I	GAAGAC	1 cut(s)	1270
BstX2I	RGATCY	3 cut(s)	325, 1315, 1378
BstYI	RGATCY	3 cut(s)	325, 1315, 1378
BsuRI	GGCC	3 cut(s)	14, 416, 452
BtgI	CCRYGG	1 cut(s)	911
BtgZI	GCGATG	1 cut(s)	1310
BtrI	CACGTC	3 cut(s)	46, 1166, 1253
BtsCI	GGATG	5 cut(s)	364, 871, 963, 1051, 1219
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	3 cut(s)	546, 586, 754
Cac8I	GCNNGC	3 cut(s)	1009, 1341, 1391
CaiI	CAGNNNCTG	2 cut(s)	299, 1335
CciI	TCATGA	1 cut(s)	1366
CfoI	GCGC	2 cut(s)	743, 1234
Cfr10I	RCCGGY	2 cut(s)	286, 1356
Cfr13I	GGNCC	2 cut(s)	451, 1105
CseI	GACGC	1 cut(s)	1349
Csp6I	GTAC	3 cut(s)	403, 1117, 1142
CviAII	CATG	6 cut(s)	216, 338, 663, 738, 1224, 1367
CviQI	GTAC	3 cut(s)	403, 1117, 1142
Eam1104I	CTCTTC	1 cut(s)	1437
EarI	CTCTTC	1 cut(s)	1437
Eco47I	GGWCC	1 cut(s)	1105
Eco57I	CTGAAG	3 cut(s)	461, 488, 1312
EcoRII	CCWGG	1 cut(s)	101
FaeI	CATG	6 cut(s)	219, 341, 666, 741, 1227, 1370
FaqI	GGGAC	5 cut(s)	119, 486, 684, 1118, 1434
FatI	CATG	6 cut(s)	215, 337, 662, 737, 1223, 1366
FauI	CCCGC	1 cut(s)	1227
Fnu4HI	GCNGC	5 cut(s)	249, 709, 896, 1206, 1248
FokI	GGATG	5 cut(s)	371, 878, 970, 1058, 1226
Fsp4HI	GCNGC	5 cut(s)	249, 709, 896, 1206, 1248
FspBI	CTAG	2 cut(s)	51, 732
GlaI	GCGC	2 cut(s)	742, 1233
GluI	GCNGC	5 cut(s)	249, 709, 896, 1206, 1248
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	14, 416, 452
HapII	CCGG	5 cut(s)	30, 287, 1043, 1357, 1417
HgaI	GACGC	1 cut(s)	1349
HhaI	GCGC	2 cut(s)	743, 1234
Hin1I	GRCGYC	1 cut(s)	1360
Hin1II	CATG	6 cut(s)	219, 341, 666, 741, 1227, 1370
Hin6I	GCGC	2 cut(s)	741, 1232
HinP1I	GCGC	2 cut(s)	741, 1232
HinfI	GANTC	3 cut(s)	163, 509, 977
HpaII	CCGG	5 cut(s)	30, 287, 1043, 1357, 1417
Hpy188I	TCNGA	3 cut(s)	301, 394, 957
Hpy99I	CGWCG	4 cut(s)	25, 47, 62, 957
HpyAV	CCTTC	6 cut(s)	77, 389, 938, 1074, 1154, 1314
HpyCH4III	ACNGT	3 cut(s)	715, 915, 1121
HpyCH4IV	ACGT	5 cut(s)	45, 57, 120, 1165, 1252
HpyCH4V	TGCA	8 cut(s)	362, 597, 898, 1127, 1186, 1205, 1393, 1462
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 347, 603, 1004, 1202, 1214
HpySE526I	ACGT	5 cut(s)	45, 57, 120, 1165, 1252
Hsp92I	GRCGYC	1 cut(s)	1360
Hsp92II	CATG	6 cut(s)	219, 341, 666, 741, 1227, 1370
HspAI	GCGC	2 cut(s)	741, 1232
Kpn2I	TCCGGA	1 cut(s)	1042
KpnI	GGTACC	1 cut(s)	1120
LguI	GCTCTTC	1 cut(s)	1437
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	4 cut(s)	235, 882, 1217, 1259
LweI	GCATC	5 cut(s)	299, 349, 837, 1204, 1290
MaeI	CTAG	2 cut(s)	51, 732
MaeII	ACGT	5 cut(s)	45, 57, 120, 1165, 1252
MaeIII	GTNAC	5 cut(s)	116, 188, 628, 689, 751
MboII	GAAGA	9 cut(s)	148, 494, 787, 800, 1190, 1275, 1373, 1424, 1454
MflI	RGATCY	3 cut(s)	325, 1315, 1378
MhlI	GDGCHC	1 cut(s)	313
MmeI	TCCRAC	3 cut(s)	414, 935, 1356
MroI	TCCGGA	1 cut(s)	1042
MroXI	GAANNNNTTC	2 cut(s)	388, 779
MseI	TTAA	8 cut(s)	183, 210, 276, 353, 371, 410, 483, 608
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	895
MspI	CCGG	5 cut(s)	30, 287, 1043, 1357, 1417
MspR9I	CCNGG	3 cut(s)	31, 103, 1418
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	743, 1234
MwoI	GCNNNNNNNGC	6 cut(s)	97, 347, 603, 1004, 1202, 1214
NciI	CCSGG	2 cut(s)	31, 1418
NlaIII	CATG	6 cut(s)	219, 341, 666, 741, 1227, 1370
NlaIV	GGNNCC	4 cut(s)	40, 327, 1106, 1118
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	2 cut(s)	341, 741
NspV	TTCGAA	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	1366
PasI	CCCWGGG	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	1437
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 1093, 1258
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	2 cut(s)	388, 779
PfeI	GAWTC	3 cut(s)	163, 509, 977
PkrI	GCNGC	5 cut(s)	250, 710, 897, 1207, 1249
PshBI	ATTAAT	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	4 cut(s)	40, 327, 1106, 1118
PspPI	GGNCC	2 cut(s)	451, 1105
PstNI	CAGNNNCTG	2 cut(s)	299, 1335
PsuI	RGATCY	3 cut(s)	325, 1315, 1378
RsaI	GTAC	3 cut(s)	404, 1118, 1143
RsaNI	GTAC	3 cut(s)	403, 1117, 1142
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	1437
SaqAI	TTAA	8 cut(s)	183, 210, 276, 353, 371, 410, 483, 608
SatI	GCNGC	5 cut(s)	249, 709, 896, 1206, 1248
Sau96I	GGNCC	2 cut(s)	451, 1105
ScrFI	CCNGG	3 cut(s)	31, 103, 1418
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	5 cut(s)	299, 349, 837, 1204, 1290
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	1105
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	1271
SmoI	CTYRAG	1 cut(s)	1271
SsiI	CCGC	4 cut(s)	709, 893, 1234, 1439
SspMI	CTAG	2 cut(s)	51, 732
StyD4I	CCNGG	3 cut(s)	29, 101, 1416
TaaI	ACNGT	3 cut(s)	715, 915, 1121
TaiI	ACGT	5 cut(s)	48, 60, 123, 1168, 1255
TaqI	TCGA	6 cut(s)	60, 382, 685, 1096, 1219, 1261
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	3 cut(s)	163, 509, 977
Tru1I	TTAA	8 cut(s)	183, 210, 276, 353, 371, 410, 483, 608
Tru9I	TTAA	8 cut(s)	183, 210, 276, 353, 371, 410, 483, 608
TscAI	CASTG	3 cut(s)	553, 586, 754
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	4 cut(s)	248, 895, 1205, 1247
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	96, 459, 651, 712, 969, 1383
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	3 cut(s)	553, 586, 754
VpaK11BI	GGWCC	1 cut(s)	1105
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	4 cut(s)	269, 520, 791, 1001
XceI	RCATGY	2 cut(s)	341, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmnI	GAANNNNTTC	2 cut(s)	388, 779
XspI	CTAG	2 cut(s)	51, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.