Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332863.1

Orthogroup ID

OG0009065

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 894

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

cttgctttaaaggatgtggagaagctaatcaacctccgaagtaattcagcaaaaccatacatgttgaaagctgaagctctaagtttgctggagaaatatgaaatggcccgggatattatcttatgtggtcttcatgttgaccctttaagtagcaatcctcttcggacagctcttcagaatttggagagtatacaagttagcatgacagggaagataagccatagtaaaccagaacgaaaagcagaacgcagcgatgattttgattgcacgttatgtttcaagttactctatgaacctgtgacaacgccttgtggacattccttttgtcgatcatgcttgtttcagtcaatggatcaaggtaacaaatgtccattatgccgaaccgttctgttcattagtcctagaacatgtgcaatcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009705 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032879 GO:0036211 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0051049 GO:0051924 GO:0055082 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097272 GO:0097275 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Malectin_like Pkinase_Tyr zf-C3HC4_2

Protein Analysis

140

Amino Acids

15.77

Weight (kDa)

8.6

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18660 AT1G18660 AT1G18660 AT1G18660
fragaria_vesca	FvH4_5g14510 FvH4_5g14510 FvH4_5g14510
malus_domestica	MD06G1197800.v1.1 MD14G1205300.v1.1
prunus_persica	Prupe.5G198700_v2.0.a1 Prupe.5G198700_v2.0.a1
pyrus_communis	pycom06g17480 pycom14g16990
rosa_chinensis	RchiOBHm_Chr7g0182141
rosa_laevigata	RLG00000005147
rosa_multiflora	Rmu_co8332863.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271470
rosa_samantha	Rh7AG048700 Rh7BG048600 Rh7CG050000 Rh7DG047900
rosa_wichuraiana	Rw0G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	190
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	2 cut(s)	93, 158
AflIII	ACRYGT	2 cut(s)	60, 407
AgsI	TTSAA	2 cut(s)	67, 280
AluBI	AGCT	4 cut(s)	25, 71, 77, 170
AluI	AGCT	4 cut(s)	25, 71, 77, 170
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	2 cut(s)	109, 110
AvaI	CYCGRG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	109, 110
BfaI	CTAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	109, 110
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	109, 110
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	109, 110
BsaJI	CCNNGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	329, 352
BspANI	GGCC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	360
BspQI	GCTCTTC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	329, 352
BssNAI	GTATAC	1 cut(s)	191
Bst1107I	GTATAC	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	165, 177
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	2 cut(s)	332, 355
BstMBI	GATC	2 cut(s)	329, 352
BstNSI	RCATGY	2 cut(s)	64, 411
BstSCI	CCNGG	2 cut(s)	107, 108
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	107
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	106
Cfr9I	CCCGGG	1 cut(s)	108
CviAII	CATG	5 cut(s)	61, 134, 202, 333, 408
CviJI	RGCY	6 cut(s)	25, 71, 77, 107, 170, 219
CviKI_1	RGCY	6 cut(s)	25, 71, 77, 107, 170, 219
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	331, 354
DpnII	GATC	2 cut(s)	329, 352
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	165, 177
EarI	CTCTTC	2 cut(s)	165, 177
Eco57I	CTGAAG	2 cut(s)	93, 158
Eco88I	CYCGRG	1 cut(s)	108
FaeI	CATG	5 cut(s)	64, 137, 205, 336, 411
FatI	CATG	5 cut(s)	60, 133, 201, 332, 407
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	5 cut(s)	64, 137, 205, 336, 411
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	4 cut(s)	139, 191, 227, 314
Hpy188I	TCNGA	3 cut(s)	38, 165, 177
Hpy8I	GTNNAC	4 cut(s)	139, 191, 227, 314
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	267, 413
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	5 cut(s)	64, 137, 205, 336, 411
Kzo9I	GATC	2 cut(s)	329, 352
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	6 cut(s)	74, 122, 192, 243, 309, 403
Lsp1109I	GCAGC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	3 cut(s)	282, 298, 359
MalI	GATC	2 cut(s)	331, 354
MboI	GATC	2 cut(s)	329, 352
MboII	GAAGA	4 cut(s)	122, 152, 164, 223
MluCI	AATT	2 cut(s)	43, 178
MnlI	CCTC	2 cut(s)	44, 168
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	2 cut(s)	8, 146
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	109, 110
NciI	CCSGG	2 cut(s)	109, 110
NdeII	GATC	2 cut(s)	329, 352
NlaIII	CATG	5 cut(s)	64, 137, 205, 336, 411
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	2 cut(s)	64, 411
PciI	ACATGT	2 cut(s)	60, 407
PciSI	GCTCTTC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	251
PscI	ACATGT	2 cut(s)	60, 407
PspPI	GGNCC	1 cut(s)	106
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	8, 146
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	329, 352
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	109, 110
SetI	ASST	9 cut(s)	27, 36, 73, 79, 172, 272, 298, 361, 422
SmaI	CCCGGG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	43, 178
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	107, 108
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	43, 178
Tru1I	TTAA	2 cut(s)	8, 146
Tru9I	TTAA	2 cut(s)	8, 146
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	4 cut(s)	114, 122, 306, 382
TspMI	CCCGGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	2 cut(s)	64, 411
XmaI	CCCGGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	43
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.