Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009065

Physical Location & Seq

Genomic Coordinates Reverse (-)

16005812 .. 16013163

Gene Structure 7352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTCTGACGAGGCAGAGCCTTCGTCCTCCGGGTTCGGCACGGACGTGCCTGGTGACGTGGACGACTACATTTCGGCTAATGAAGGAGAGCCATCATTGCCCTGGGACATATTTAGTCATGTTTTTGATCTTGTGAAGAATGGAAATCAGGCATTTCGAGAGAACCGCTTTGAAGAGGCAATTAATTGTTACTCCAGAGCCAATAACGTTAAACCATGTGATCCTGTTATTCTTGGCAACCGATGTGCTGCTTATATCAGGATCAGTAAATTCCTTAGACACATACCGGCTTCGGCTTCTGAATATAGAGCACTGAATGGTTTGGATCCCACAACACATGCTGAACTTGCTTTAAAGGATGTGGAGAAGCTAATGAACCTTCGAAGTAATTCAGAAAAAGCATTCATATTAAAGACTGAAGCTCTAGTTTTGTTGGAGAGATATGACATGGCCCGGGATGTTATTCTTTCTGGCCTTCAGGTTGATCCTTTTAGCAATCCTCTTCGGGAATGTTTTCAGAATTTAGAGAGAATACAAGCTAATTTCACAGGGAGGAGAAGCCATAGGAAAGCAGAACGCAGTGATGACTTTGATTGCACACTATGCTTGAAATTACTATATGAACCTGTCACAACTCCTTGTGGGCATTCTTTTTGTCGTTCATGCCTATTTCAGGCAATGGATCGAGGTAACAAATGTCCTTTGTGCCGAACAGTTCTTTTCATTAGTCCTAGAACATGTGCAATAAGTGTGACACTTAACGACATTATACAAAAGAACTTCCCAGAGGAATTTGCCGAAAGGAAGTTGGAGAATGATACAATGACAAACTTTGGTGTTGATTTGATGCCACTCTTTGTAATGGATGTTGTCCTCCCATTTCAGAAGTTTCCGCTAAACATTTTTGAACCTCGGTATAGACTTATGGTAAGGAGGATAATGGAAGGCAACCGTCGCATGGGAATGGTTATCATTGATTCTTCAACAGGTTCAATAGCTGATTTTGCTTGTGAAGTGGAAATTACTGAGTGTGAACCATTTCCAGATGGACGTTTATATTTAGAGATTGAAAGTCGCCGACGGTTTCGTATAATTCGATCTTGGGACCAAGATGGGTACCGTGTTGCAGAGATTGAATGGGTACATGACATATATCCATCAGAAGGGTCTAGAGAGAGAATAGACTTGCAGGAATTGACAAATAATGCAGCAGAGTATGCTCGGTTATGGATAGGGCGGGGTAAAAGAGCAGCACGTCAAGATCGAAGACGACTTGAGAGACTTCTCGGCATGGAAGCGATGATGCCTTCACTACAAGATCCTGAGTGCTTCAGCTTCTGGCTTGCTTCTTTATCGAACCGGCGTCCAAATGAAAGGTTGGATCTCCTACGCTTGCGAGATACAAGAGAGAGAATACAACGTGGACTGATATATCTCAGAGCAGAAGAGCAGGGTTGTCAAGTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg zf-C3HC4_2

Protein Analysis

490

Amino Acids

56.55

Weight (kDa)

5.68

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18660 AT1G18660 AT1G18660 AT1G18660
fragaria_vesca	FvH4_5g14510 FvH4_5g14510 FvH4_5g14510
malus_domestica	MD06G1197800.v1.1 MD14G1205300.v1.1
prunus_persica	Prupe.5G198700_v2.0.a1 Prupe.5G198700_v2.0.a1
pyrus_communis	pycom06g17480 pycom14g16990
rosa_chinensis	RchiOBHm_Chr7g0182141
rosa_laevigata	RLG00000005147
rosa_multiflora	Rmu_co8332863.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271470
rosa_samantha	Rh7AG048700 Rh7BG048600 Rh7CG050000 Rh7DG047900
rosa_wichuraiana	Rw0G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1116
AccB1I	GGYRCC	1 cut(s)	1116
AciI	CCGC	3 cut(s)	166, 893, 1237
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	8 cut(s)	215, 269, 320, 333, 479, 690, 1313, 1389
AcsI	RAATTY	3 cut(s)	269, 520, 791
AcuI	CTGAAG	3 cut(s)	438, 461, 1315
AcyI	GRCGYC	1 cut(s)	1363
AfaI	GTAC	2 cut(s)	1118, 1143
AfiI	CCNNNNNNNGG	3 cut(s)	673, 958, 1163
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	7 cut(s)	173, 610, 908, 984, 993, 1070, 1136
AjiI	CACGTC	3 cut(s)	46, 58, 1256
AjnI	CCWGG	2 cut(s)	49, 101
AleI	CACNNNNGTG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	370, 422, 539, 998, 1335
AluI	AGCT	5 cut(s)	370, 422, 539, 998, 1335
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	1273
AlwI	GGATC	8 cut(s)	215, 269, 320, 333, 479, 690, 1313, 1389
AlwNI	CAGNNNCTG	1 cut(s)	1338
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	2 cut(s)	450, 472
ApeKI	GCWGC	3 cut(s)	248, 1208, 1250
ApoI	RAATTY	3 cut(s)	269, 520, 791
AseI	ATTAAT	1 cut(s)	183
Asp700I	GAANNNNTTC	3 cut(s)	388, 513, 1038
Asp718I	GGTACC	1 cut(s)	1116
AspS9I	GGNCC	2 cut(s)	451, 1105
AsuC2I	CCSGG	3 cut(s)	31, 454, 455
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	453
AvaII	GGWCC	1 cut(s)	1105
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	1116
BbsI	GAAGAC	1 cut(s)	1273
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	235, 1220, 1262
BccI	CCATC	4 cut(s)	100, 1040, 1106, 1165
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	51, 103
BcnI	CCSGG	3 cut(s)	31, 454, 455
BcoDI	GTCTC	1 cut(s)	1273
BfaI	CTAG	3 cut(s)	425, 732, 1170
BisI	GCNGC	3 cut(s)	249, 1209, 1251
BlsI	GCNGC	3 cut(s)	250, 1210, 1252
Bme1390I	CCNGG	5 cut(s)	31, 51, 103, 454, 455
Bme18I	GGWCC	1 cut(s)	1105
BmeT110I	CYCGRG	1 cut(s)	453
BmgBI	CACGTC	3 cut(s)	46, 58, 1256
BmgT120I	GGNCC	2 cut(s)	451, 1105
BmiI	GGNNCC	3 cut(s)	327, 1106, 1118
BmrFI	CCNGG	5 cut(s)	31, 51, 103, 454, 455
BmsI	GCATC	2 cut(s)	837, 1293
BpiI	GAAGAC	1 cut(s)	1273
BpmI	CTGGAG	1 cut(s)	178
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	1295
BpuMI	CCSGG	3 cut(s)	31, 454, 455
BsaHI	GRCGYC	1 cut(s)	1363
BsaJI	CCNNGG	4 cut(s)	101, 102, 453, 911
Bsc4I	CCNNNNNNNGG	3 cut(s)	673, 958, 1163
Bse118I	RCCGGY	2 cut(s)	286, 1359
Bse3DI	GCAATG	2 cut(s)	95, 684
BseBI	CCWGG	2 cut(s)	51, 103
BseDI	CCNNGG	4 cut(s)	101, 102, 453, 911
BseGI	GGATG	3 cut(s)	364, 463, 871
BseLI	CCNNNNNNNGG	3 cut(s)	673, 958, 1163
BseMI	GCAATG	2 cut(s)	95, 684
BseMII	CTCAG	3 cut(s)	1017, 1314, 1450
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	235, 1220, 1262
BshFI	GGCC	2 cut(s)	452, 474
BshNI	GGYRCC	1 cut(s)	1116
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	30, 287, 454, 1360
BslFI	GGGAC	2 cut(s)	119, 1118
BslI	CCNNNNNNNGG	3 cut(s)	673, 958, 1163
BsmAI	GTCTC	1 cut(s)	1273
BsmFI	GGGAC	2 cut(s)	119, 1118
BsmI	GAATGC	2 cut(s)	401, 646
BsnI	GGCC	2 cut(s)	452, 474
BsoBI	CYCGRG	1 cut(s)	453
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	166, 893, 1237
BspANI	GGCC	2 cut(s)	452, 474
BspCNI	CTCAG	3 cut(s)	1018, 1315, 1449
BspLI	GGNNCC	3 cut(s)	327, 1106, 1118
BspPI	GGATC	8 cut(s)	215, 269, 320, 333, 479, 690, 1313, 1389
BspQI	GCTCTTC	1 cut(s)	1440
BspT104I	TTCGAA	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	1116
BsrDI	GCAATG	2 cut(s)	95, 684
BsrFI	RCCGGY	2 cut(s)	286, 1359
BssAI	RCCGGY	2 cut(s)	286, 1359
BssECI	CCNNGG	4 cut(s)	101, 102, 453, 911
BssNI	GRCGYC	1 cut(s)	1363
Bst2UI	CCWGG	2 cut(s)	51, 103
Bst4CI	ACNGT	4 cut(s)	715, 953, 1083, 1121
Bst6I	CTCTTC	3 cut(s)	168, 507, 1440
BstACI	GRCGYC	1 cut(s)	1363
BstAPI	GCANNNNNTGC	2 cut(s)	603, 1217
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	1344, 1394
BstDEI	CTNAG	4 cut(s)	275, 1026, 1323, 1436
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	3 cut(s)	364, 463, 871
BstMAI	GTCTC	1 cut(s)	1273
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 347, 603, 954, 1004, 1217
BstNI	CCWGG	2 cut(s)	51, 103
BstNSI	RCATGY	2 cut(s)	341, 741
BstSCI	CCNGG	5 cut(s)	29, 49, 101, 452, 453
BstV1I	GCAGC	3 cut(s)	235, 1220, 1262
BstV2I	GAAGAC	1 cut(s)	1273
BstX2I	RGATCY	3 cut(s)	325, 1318, 1381
BstYI	RGATCY	3 cut(s)	325, 1318, 1381
BsuRI	GGCC	2 cut(s)	452, 474
BtgZI	GCGATG	1 cut(s)	1313
BtrI	CACGTC	3 cut(s)	46, 58, 1256
BtsCI	GGATG	3 cut(s)	364, 463, 871
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	2 cut(s)	311, 586
Cac8I	GCNNGC	2 cut(s)	1344, 1394
CaiI	CAGNNNCTG	1 cut(s)	1338
Cfr10I	RCCGGY	2 cut(s)	286, 1359
Cfr13I	GGNCC	2 cut(s)	451, 1105
Cfr9I	CCCGGG	1 cut(s)	453
CseI	GACGC	1 cut(s)	1352
Csp6I	GTAC	2 cut(s)	1117, 1142
CviAII	CATG	9 cut(s)	119, 216, 338, 448, 663, 738, 958, 1145, 1291
CviQI	GTAC	2 cut(s)	1117, 1142
DdeI	CTNAG	4 cut(s)	275, 1026, 1323, 1436
DraI	TTTAAA	1 cut(s)	354
Eam1104I	CTCTTC	3 cut(s)	168, 507, 1440
EarI	CTCTTC	3 cut(s)	168, 507, 1440
Eco47I	GGWCC	1 cut(s)	1105
Eco57I	CTGAAG	3 cut(s)	438, 461, 1315
Eco88I	CYCGRG	1 cut(s)	453
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	49, 101
FaeI	CATG	9 cut(s)	122, 219, 341, 451, 666, 741, 961, 1148, 1294
FaqI	GGGAC	2 cut(s)	119, 1118
FatI	CATG	9 cut(s)	118, 215, 337, 447, 662, 737, 957, 1144, 1290
FauI	CCCGC	1 cut(s)	1230
Fnu4HI	GCNGC	3 cut(s)	249, 1209, 1251
FokI	GGATG	3 cut(s)	371, 470, 878
Fsp4HI	GCNGC	3 cut(s)	249, 1209, 1251
FspBI	CTAG	3 cut(s)	425, 732, 1170
GluI	GCNGC	3 cut(s)	249, 1209, 1251
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	452, 474
HapII	CCGG	4 cut(s)	30, 287, 454, 1360
HgaI	GACGC	1 cut(s)	1352
Hin1I	GRCGYC	1 cut(s)	1363
Hin1II	CATG	9 cut(s)	122, 219, 341, 451, 666, 741, 961, 1148, 1294
HinfI	GANTC	1 cut(s)	977
HpaII	CCGG	4 cut(s)	30, 287, 454, 1360
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	3 cut(s)	61, 1034, 1424
Hpy188I	TCNGA	7 cut(s)	7, 301, 394, 519, 885, 1162, 1439
Hpy188III	TCNNGA	8 cut(s)	158, 195, 259, 506, 1043, 1170, 1259, 1322
Hpy8I	GTNNAC	3 cut(s)	61, 1034, 1424
Hpy99I	CGWCG	2 cut(s)	957, 1083
HpyAV	CCTTC	7 cut(s)	30, 77, 389, 485, 938, 1157, 1317
HpyCH4III	ACNGT	4 cut(s)	715, 953, 1083, 1121
HpyCH4IV	ACGT	6 cut(s)	45, 57, 207, 1051, 1255, 1420
HpyCH4V	TGCA	6 cut(s)	597, 743, 1127, 1189, 1208, 1465
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 347, 603, 954, 1004, 1217
HpyF3I	CTNAG	4 cut(s)	275, 1026, 1323, 1436
HpySE526I	ACGT	6 cut(s)	45, 57, 207, 1051, 1255, 1420
Hsp92I	GRCGYC	1 cut(s)	1363
Hsp92II	CATG	9 cut(s)	122, 219, 341, 451, 666, 741, 961, 1148, 1294
KpnI	GGTACC	1 cut(s)	1120
LguI	GCTCTTC	1 cut(s)	1440
Lsp1109I	GCAGC	3 cut(s)	235, 1220, 1262
LweI	GCATC	2 cut(s)	837, 1293
MaeI	CTAG	3 cut(s)	425, 732, 1170
MaeII	ACGT	6 cut(s)	45, 57, 207, 1051, 1255, 1420
MaeIII	GTNAC	5 cut(s)	53, 188, 628, 689, 751
MboII	GAAGA	6 cut(s)	148, 185, 494, 972, 1278, 1457
MflI	RGATCY	3 cut(s)	325, 1318, 1381
MhlI	GDGCHC	1 cut(s)	313
MmeI	TCCRAC	3 cut(s)	414, 789, 1359
MroXI	GAANNNNTTC	3 cut(s)	388, 513, 1038
MseI	TTAA	5 cut(s)	183, 210, 353, 410, 759
MslI	CAYNNNNRTG	2 cut(s)	44, 962
MspI	CCGG	4 cut(s)	30, 287, 454, 1360
MspR9I	CCNGG	5 cut(s)	31, 51, 103, 454, 455
Mva1269I	GAATGC	2 cut(s)	401, 646
MvaI	CCWGG	2 cut(s)	51, 103
MwoI	GCNNNNNNNGC	6 cut(s)	97, 347, 603, 954, 1004, 1217
NciI	CCSGG	3 cut(s)	31, 454, 455
NlaIII	CATG	9 cut(s)	122, 219, 341, 451, 666, 741, 961, 1148, 1294
NlaIV	GGNNCC	3 cut(s)	327, 1106, 1118
NmeAIII	GCCGAG	1 cut(s)	1266
NmuCI	GTSAC	3 cut(s)	53, 628, 751
NspI	RCATGY	2 cut(s)	341, 741
NspV	TTCGAA	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	102
PciI	ACATGT	1 cut(s)	737
PciSI	GCTCTTC	1 cut(s)	1440
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 1093, 1261
PctI	GAATGC	2 cut(s)	401, 646
PdmI	GAANNNNTTC	3 cut(s)	388, 513, 1038
PfeI	GAWTC	1 cut(s)	977
PkrI	GCNGC	3 cut(s)	250, 1210, 1252
PscI	ACATGT	1 cut(s)	737
PshBI	ATTAAT	1 cut(s)	183
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	49, 101
PspGI	CCWGG	2 cut(s)	49, 101
PspN4I	GGNNCC	3 cut(s)	327, 1106, 1118
PspPI	GGNCC	2 cut(s)	451, 1105
PstNI	CAGNNNCTG	1 cut(s)	1338
PsuI	RGATCY	3 cut(s)	325, 1318, 1381
RsaI	GTAC	2 cut(s)	1118, 1143
RsaNI	GTAC	2 cut(s)	1117, 1142
RseI	CAYNNNNRTG	2 cut(s)	44, 962
SapI	GCTCTTC	1 cut(s)	1440
SaqAI	TTAA	5 cut(s)	183, 210, 353, 410, 759
SatI	GCNGC	3 cut(s)	249, 1209, 1251
Sau96I	GGNCC	2 cut(s)	451, 1105
ScrFI	CCNGG	5 cut(s)	31, 51, 103, 454, 455
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	837, 1293
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	1 cut(s)	1105
SmaI	CCCGGG	1 cut(s)	455
SmiMI	CAYNNNNRTG	2 cut(s)	44, 962
SmlI	CTYRAG	1 cut(s)	1274
SmoI	CTYRAG	1 cut(s)	1274
SsiI	CCGC	3 cut(s)	166, 893, 1237
SspMI	CTAG	3 cut(s)	425, 732, 1170
StyD4I	CCNGG	5 cut(s)	29, 49, 101, 452, 453
TaaI	ACNGT	4 cut(s)	715, 953, 1083, 1121
TaiI	ACGT	6 cut(s)	48, 60, 210, 1054, 1258, 1423
TaqI	TCGA	6 cut(s)	157, 382, 685, 1096, 1264, 1355
TfiI	GAWTC	1 cut(s)	977
Tru1I	TTAA	5 cut(s)	183, 210, 353, 410, 759
Tru9I	TTAA	5 cut(s)	183, 210, 353, 410, 759
TscAI	CASTG	2 cut(s)	318, 586
TseFI	GTSAC	3 cut(s)	53, 628, 751
TseI	GCWGC	3 cut(s)	248, 1208, 1250
Tsp45I	GTSAC	3 cut(s)	53, 628, 751
TspDTI	ATGAA	7 cut(s)	96, 389, 394, 636, 651, 712, 1386
TspGWI	ACGGA	1 cut(s)	56
TspMI	CCCGGG	1 cut(s)	453
TspRI	CASTG	2 cut(s)	318, 586
VpaK11BI	GGWCC	1 cut(s)	1105
VspI	ATTAAT	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	3 cut(s)	269, 520, 791
XbaI	TCTAGA	1 cut(s)	1169
XceI	RCATGY	2 cut(s)	341, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XmaI	CCCGGG	1 cut(s)	453
XmnI	GAANNNNTTC	3 cut(s)	388, 513, 1038
XspI	CTAG	3 cut(s)	425, 732, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.