FvH4_5g15300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011434
Physical Location & Seq
Forward (+)
8657868 .. 8660848
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15300.t2

Sequence Viewer

Length: 1065 bp
ATGGAAGAGCCCCAATCAGCCCAGTCTGCCCAATCAGGAAAGCTTCTTCGCTACGGGCTGCGATCCGTGACGAAACCGAAGGAGGTGAAGCTACCGGCGGCGGAGTTGTCCAACCCCTCCGCGGCTTCTAAGAGGGGAAGAGCTGCGTCGAATGTGAGCAAAAGTGTGAGTGTTCTCGATCTGTCGGGCAAGGACAAGCCTGTTAGGCCACCCAGGAGGCTCTCCATTCCTAACAAGGTGGCTGGTACTCCAGCTCCGAAACTGGGTGGGAACATCACTCCCGTTTCCGAGGCTAGATCAAGGAGGTCTGTGAAAAGTGAAACACCTGCTTCGGATGCTTCTAGGCTGACAAGTCGGAAGAAGTTTAGTATCCTGTCCTCGGAATCATACTGGCTTTCACAGATTAAGCTCTCTGAGGCTGCTGGCAGGCACTCAGTTTCGCTTGGGTTTTTCAAACTAGCCTTGGAGGCAGGATGTGAGCAACCTCTTCAGCGGATGCGGGATGAGCTAAAAGCTTATGCACTTCGTCATAAAATTGGTGATCTTGCTGATCTTGCAGTCCCACTGAAAGAACTATTTGAGAGCTATGGTGTTGTAGAAAATGAGCAGGTGCAGGTCTCGGAAACCTGTTCTCACGTACCTGAAGAGGGGACTCGGTCTTCTGATGAAGATGCCAAGAGCTCTTCATCGACAATGGGAACTAGGAAACTGAAACCCAAGTCATTGAACACTGATATTGCTCAAGTCACTCCAGTCATAAACAAACCCAAGAAGGAAGTACCTCAGAAAAGTATTCCTGCAGCCAGGACTAGGGCATCTGCGGCAAAGAAGTCTTCAACTTCAGCACCTGTTTCTGATTCTGGTACGCAAAGATCAGCAGCAAAGAAACCCCAGAAACCAATTAAGCAAGAAGCTAAGAATGAAAAGGATAGGAAGAAGCAGGGGAAATCTGCTGTTGAACAAGGCAAGTTTATCCCTACATCTGTAGAGGAAGCACTCAATGAGAACAAAGAAAATGAGGATGCTGCCTCAATGGAGGAGATAAATTTGACTGAAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.24

Weight (kDa)

9.74

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 334, 598
Acc36I ACCTGC 3 cut(s) 334, 598, 604
AccII CGCG 1 cut(s) 122
AciI CCGC 7 cut(s) 98, 101, 120, 122, 493, 499, 821
AclWI GGATC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 1045
AcuI CTGAAG 3 cut(s) 473, 663, 825
AfaI GTAC 4 cut(s) 247, 639, 780, 865
AfiI CCNNNNNNNGG 5 cut(s) 121, 263, 379, 647, 810
AgsI TTSAA 4 cut(s) 454, 727, 837, 959
AjnI CCWGG 2 cut(s) 212, 803
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 6 cut(s) 58, 143, 419, 800, 878, 1025
ApoI RAATTY 1 cut(s) 1045
AsuHPI GGTGA 2 cut(s) 97, 551
BanII GRGCYC 2 cut(s) 12, 683
BbsI GAAGAC 2 cut(s) 651, 825
Bbv12I GWGCWC 1 cut(s) 683
BbvI GCAGC 6 cut(s) 45, 130, 406, 812, 890, 1012
BciT130I CCWGG 2 cut(s) 214, 805
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 5 cut(s) 294, 342, 458, 702, 810
BfmI CTRYAG 2 cut(s) 798, 984
BfuAI ACCTGC 3 cut(s) 334, 598, 604
BfuI GTATCC 1 cut(s) 380
BglI GCCNNNNNGGC 2 cut(s) 205, 467
BisI GCNGC 9 cut(s) 59, 99, 123, 144, 420, 801, 822, 879, 1026
BlsI GCNGC 9 cut(s) 60, 100, 124, 145, 421, 802, 823, 880, 1027
Bme1390I CCNGG 2 cut(s) 214, 805
BmrFI CCNGG 2 cut(s) 214, 805
BmrI ACTGGG 2 cut(s) 16, 272
BmsI GCATC 5 cut(s) 325, 486, 661, 824, 1012
BmuI ACTGGG 2 cut(s) 16, 272
BpiI GAAGAC 2 cut(s) 651, 825
BpmI CTGGAG 2 cut(s) 234, 735
BpuEI CTTGAG 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 5 cut(s) 120, 212, 288, 378, 462
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 263, 379, 647, 810
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 4 cut(s) 22, 267, 395, 752
BseBI CCWGG 2 cut(s) 214, 805
BseDI CCNNGG 5 cut(s) 120, 212, 288, 378, 462
BseGI GGATG 5 cut(s) 340, 479, 501, 508, 1027
BseLI CCNNNNNNNGG 5 cut(s) 121, 263, 379, 647, 810
BseMII CTCAG 3 cut(s) 405, 447, 797
BseNI ACTGG 4 cut(s) 22, 267, 395, 752
BseRI GAGGAG 1 cut(s) 1052
BseXI GCAGC 6 cut(s) 45, 130, 406, 812, 890, 1012
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 683
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 545, 664
BslI CCNNNNNNNGG 5 cut(s) 121, 263, 379, 647, 810
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 2 cut(s) 545, 664
BsnI GGCC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 12, 683
Bsp143I GATC 6 cut(s) 62, 178, 296, 541, 550, 872
BspACI CCGC 7 cut(s) 98, 101, 120, 122, 493, 499, 821
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 3 cut(s) 406, 446, 796
BspFNI CGCG 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 802
BspMI ACCTGC 3 cut(s) 334, 598, 604
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 2 cut(s) 133, 688
BspTNI GGTCTC 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 4 cut(s) 22, 267, 395, 752
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 5 cut(s) 120, 212, 288, 378, 462
BssMI GATC 6 cut(s) 62, 178, 296, 541, 550, 872
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 214, 805
Bst6I CTCTTC 4 cut(s) 133, 492, 639, 688
BstBAI YACGTR 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 424, 428
BstDEI CTNAG 5 cut(s) 129, 414, 433, 783, 915
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 5 cut(s) 340, 479, 501, 508, 1027
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 6 cut(s) 65, 181, 299, 544, 553, 875
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 6 cut(s) 62, 178, 296, 541, 550, 872
BstMWI GCNNNNNNNGC 7 cut(s) 26, 205, 335, 467, 505, 554, 821
BstNI CCWGG 2 cut(s) 214, 805
BstSCI CCNGG 2 cut(s) 212, 803
BstSFI CTRYAG 2 cut(s) 798, 984
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 6 cut(s) 45, 130, 406, 812, 890, 1012
BstV2I GAAGAC 2 cut(s) 651, 825
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 5 cut(s) 340, 479, 501, 508, 1027
BtsIMutI CAGTG 2 cut(s) 563, 729
BveI ACCTGC 3 cut(s) 334, 598, 604
Cac8I GCNNGC 2 cut(s) 424, 428
CaiI CAGNNNCTG 1 cut(s) 848
Cfr10I RCCGGY 1 cut(s) 94
Cfr42I CCGCGG 1 cut(s) 123
CseI GACGC 1 cut(s) 135
Csp6I GTAC 4 cut(s) 246, 638, 779, 864
CviQI GTAC 4 cut(s) 246, 638, 779, 864
DdeI CTNAG 5 cut(s) 129, 414, 433, 783, 915
DpnI GATC 6 cut(s) 64, 180, 298, 543, 552, 874
DpnII GATC 6 cut(s) 62, 178, 296, 541, 550, 872
Eam1104I CTCTTC 4 cut(s) 133, 492, 639, 688
EarI CTCTTC 4 cut(s) 133, 492, 639, 688
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 2 cut(s) 12, 683
Eco31I GGTCTC 1 cut(s) 622
Eco53kI GAGCTC 1 cut(s) 681
Eco57I CTGAAG 3 cut(s) 473, 663, 825
EcoICRI GAGCTC 1 cut(s) 681
EcoRII CCWGG 2 cut(s) 212, 803
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 2 cut(s) 12, 683
ErhI CCWWGG 1 cut(s) 462
FaiI YATR 5 cut(s) 388, 519, 531, 588, 758
FaqI GGGAC 2 cut(s) 545, 664
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 9 cut(s) 59, 99, 123, 144, 420, 801, 822, 879, 1026
FokI GGATG 5 cut(s) 347, 486, 508, 515, 1034
FriOI GRGCYC 2 cut(s) 12, 683
Fsp4HI GCNGC 9 cut(s) 59, 99, 123, 144, 420, 801, 822, 879, 1026
FspBI CTAG 5 cut(s) 294, 342, 458, 702, 810
GluI GCNGC 9 cut(s) 59, 99, 123, 144, 420, 801, 822, 879, 1026
GsuI CTGGAG 2 cut(s) 234, 735
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 135
HindIII AAGCTT 2 cut(s) 41, 513
HinfI GANTC 3 cut(s) 383, 652, 857
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 97, 551
Hpy188III TCNNGA 2 cut(s) 36, 176
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 73, 766
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 4 cut(s) 521, 557, 613, 800
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 205, 335, 467, 505, 554, 821
HpyF3I CTNAG 5 cut(s) 129, 414, 433, 783, 915
HpySE526I ACGT 1 cut(s) 636
KspI CCGCGG 1 cut(s) 123
Kzo9I GATC 6 cut(s) 62, 178, 296, 541, 550, 872
LguI GCTCTTC 2 cut(s) 133, 688
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 6 cut(s) 45, 130, 406, 812, 890, 1012
LweI GCATC 5 cut(s) 325, 486, 661, 824, 1012
MaeI CTAG 5 cut(s) 294, 342, 458, 702, 810
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 2 cut(s) 67, 745
MalI GATC 6 cut(s) 64, 180, 298, 543, 552, 874
MboI GATC 6 cut(s) 62, 178, 296, 541, 550, 872
MhlI GDGCHC 2 cut(s) 12, 683
MluCI AATT 3 cut(s) 534, 900, 1045
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 2 cut(s) 135, 335
MseI TTAA 3 cut(s) 405, 903, 1063
MspA1I CMGCKG 2 cut(s) 122, 493
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 214, 805
MvaI CCWGG 2 cut(s) 214, 805
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 7 cut(s) 26, 205, 335, 467, 505, 554, 821
NdeII GATC 6 cut(s) 62, 178, 296, 541, 550, 872
NmuCI GTSAC 2 cut(s) 67, 745
PaqCI CACCTGC 2 cut(s) 334, 598
PciSI GCTCTTC 2 cut(s) 133, 688
PfeI GAWTC 2 cut(s) 383, 857
PflFI GACNNNGTC 1 cut(s) 655
PkrI GCNGC 9 cut(s) 60, 100, 124, 145, 421, 802, 823, 880, 1027
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 683
Psp6I CCWGG 2 cut(s) 212, 803
PspGI CCWGG 2 cut(s) 212, 803
PstI CTGCAG 1 cut(s) 802
PstNI CAGNNNCTG 1 cut(s) 848
PsyI GACNNNGTC 1 cut(s) 655
RsaI GTAC 4 cut(s) 247, 639, 780, 865
RsaNI GTAC 4 cut(s) 246, 638, 779, 864
SacI GAGCTC 1 cut(s) 683
SacII CCGCGG 1 cut(s) 123
SapI GCTCTTC 2 cut(s) 133, 688
SaqAI TTAA 3 cut(s) 405, 903, 1063
SatI GCNGC 9 cut(s) 59, 99, 123, 144, 420, 801, 822, 879, 1026
Sau3AI GATC 6 cut(s) 62, 178, 296, 541, 550, 872
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 2 cut(s) 214, 805
SduI GDGCHC 2 cut(s) 12, 683
SfaNI GCATC 5 cut(s) 325, 486, 661, 824, 1012
SfcI CTRYAG 2 cut(s) 798, 984
Sfr303I CCGCGG 1 cut(s) 123
SgrBI CCGCGG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 3 cut(s) 534, 900, 1045
SsiI CCGC 7 cut(s) 98, 101, 120, 122, 493, 499, 821
SspMI CTAG 5 cut(s) 294, 342, 458, 702, 810
SstI GAGCTC 1 cut(s) 683
StyD4I CCNGG 2 cut(s) 212, 803
StyI CCWWGG 1 cut(s) 462
TaiI ACGT 1 cut(s) 639
TaqI TCGA 3 cut(s) 149, 177, 689
TaqII GACCGA 1 cut(s) 645
TasI AATT 3 cut(s) 534, 900, 1045
TauI GCSGC 3 cut(s) 101, 125, 824
TfiI GAWTC 2 cut(s) 383, 857
Tru1I TTAA 3 cut(s) 405, 903, 1063
Tru9I TTAA 3 cut(s) 405, 903, 1063
TscAI CASTG 2 cut(s) 570, 736
TseFI GTSAC 2 cut(s) 67, 745
TseI GCWGC 6 cut(s) 58, 143, 419, 800, 878, 1025
Tsp45I GTSAC 2 cut(s) 67, 745
TspDTI ATGAA 3 cut(s) 675, 681, 936
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 2 cut(s) 570, 736
Tth111I GACNNNGTC 1 cut(s) 655
XapI RAATTY 1 cut(s) 1045
XspI CTAG 5 cut(s) 294, 342, 458, 702, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.